Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35756 * 116.99491 * 2 1 4 4 C 1.38398 * 120.09254 * 0.02562 * 3 2 1 5 5 C 1.38797 * 120.05193 * 179.97438 * 4 3 2 6 6 N 1.39648 * 119.88382 * 179.97438 * 5 4 3 7 7 C 1.34774 * 119.99847 * 24.89001 * 6 5 4 8 8 O 1.21284 * 119.99935 * 5.52329 * 7 6 5 9 9 C 1.50706 * 119.99740 * 185.52136 * 7 6 5 10 10 C 1.53003 * 109.47029 * 180.02562 * 9 7 6 11 11 C 1.50689 * 109.47000 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00487 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00121 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00287 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99810 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46998 * 90.00004 * 15 13 11 17 17 H 1.48498 * 109.47355 * 210.00090 * 15 13 11 18 18 H 1.48505 * 109.46943 * 330.00094 * 15 13 11 19 19 C 1.39426 * 120.22923 * 359.97438 * 5 4 3 20 20 F 1.35105 * 119.90682 * 180.02562 * 19 5 4 21 21 C 1.37720 * 120.18147 * 359.97438 * 19 5 4 22 22 C 1.39906 * 119.94984 * 359.77272 * 21 19 5 23 23 C 1.43196 * 120.12043 * 180.25630 * 22 21 19 24 24 N 3.53039 * 165.84200 * 178.90859 * 2 1 3 25 25 H 1.08997 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47574 * 60.00164 * 1 2 3 27 27 H 1.08998 * 109.47125 * 299.99663 * 1 2 3 28 28 H 1.08002 * 119.97337 * 359.97438 * 4 3 2 29 29 H 0.96996 * 119.99707 * 204.88299 * 6 5 4 30 30 H 1.08998 * 109.46979 * 299.99462 * 9 7 6 31 31 H 1.08993 * 109.47167 * 60.00116 * 9 7 6 32 32 H 1.08997 * 109.46700 * 300.00261 * 10 9 7 33 33 H 1.09006 * 109.47007 * 59.99625 * 10 9 7 34 34 H 0.96999 * 119.99816 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.02724 * 180.02562 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2933 2.3715 0.0005 5 6 1.9242 3.6078 0.0011 6 7 1.1619 4.7779 0.0011 7 6 -0.0932 4.7645 0.4918 8 8 -0.5255 3.7642 1.0242 9 6 -0.9594 5.9926 0.3792 10 6 -2.3249 5.7132 1.0104 11 6 -3.1908 6.9413 0.8983 12 1 -2.8060 7.8320 0.4239 13 6 -4.4749 6.9277 1.4005 14 7 -5.2308 7.9994 1.3022 15 14 -5.1408 5.3870 2.2204 16 1 -4.8386 5.4297 3.6737 17 1 -6.6108 5.3168 2.0223 18 1 -4.5022 4.1898 1.6170 19 6 3.3163 3.6855 0.0016 20 9 3.9236 4.8923 0.0027 21 6 4.0739 2.5354 0.0022 22 6 3.4458 1.2852 0.0070 23 6 4.2300 0.0871 0.0131 24 7 4.8522 -0.8634 0.0164 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2147 2.3161 0.0005 29 1 1.5359 5.6003 -0.3520 30 1 -0.4821 6.8229 0.8996 31 1 -1.0904 6.2496 -0.6719 32 1 -2.8024 4.8827 0.4904 33 1 -2.1935 5.4563 2.0616 34 1 -6.1343 7.9897 1.6551 35 1 5.1521 2.5985 0.0030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331482957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = -63.446024 kcal Electronic energy + Delta-G solvation = -22203.303774 eV Core-core repulsion = 18502.677277 eV Total energy + Delta-G solvation = -3700.626497 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.15168 -41.05426 -39.77977 -37.76802 -36.59641 -34.83091 -33.73078 -31.72562 -30.58692 -30.20525 -27.60299 -26.53388 -24.29683 -22.83413 -21.58098 -20.11763 -19.74452 -18.63302 -17.82586 -17.06053 -16.98844 -16.40719 -16.13769 -15.87590 -15.66534 -15.35942 -14.58647 -14.29161 -14.20153 -13.94451 -13.83400 -13.54916 -13.26982 -13.05820 -12.71123 -12.55034 -12.46197 -12.29196 -11.82292 -11.62052 -11.49283 -11.11096 -10.53150 -10.36825 -10.24272 -9.93895 -9.61151 -9.33767 -8.91337 -8.62773 -8.28022 -6.14180 -4.14465 0.29223 0.79092 2.34048 2.48781 2.71174 2.80110 2.86048 3.28090 3.35687 3.42150 3.45886 3.53147 3.91162 4.34363 4.39094 4.55881 4.87179 4.88398 4.92853 5.01327 5.17375 5.20664 5.30909 5.36104 5.53986 5.77144 5.81948 5.86250 5.91610 6.35182 6.43073 6.82446 7.14100 7.16172 7.22457 7.33462 7.63253 8.03177 8.38787 8.87825 9.47606 10.98453 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.003700 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.698365 B = 7566.631974 C = 8681.666687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.306 6.306 3 C 0.196 3.804 4 C -0.210 4.210 5 C 0.207 3.793 6 N -0.675 5.675 7 C 0.514 3.486 8 O -0.510 6.510 9 C -0.122 4.122 10 C 0.002 3.998 11 C -0.529 4.529 12 H 0.074 0.926 13 C 0.070 3.930 14 N -0.900 5.900 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.262 1.262 19 C 0.022 3.978 20 F -0.132 7.132 21 C -0.042 4.042 22 C -0.071 4.071 23 C 0.271 3.729 24 N -0.422 5.422 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.175 0.825 29 H 0.420 0.580 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.025 0.975 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -10.125 -4.747 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.217 6.217 3 C 0.146 3.854 4 C -0.231 4.231 5 C 0.107 3.893 6 N -0.318 5.318 7 C 0.305 3.695 8 O -0.384 6.384 9 C -0.161 4.161 10 C -0.036 4.036 11 C -0.567 4.567 12 H 0.092 0.908 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.186 1.186 19 C 0.000 4.000 20 F -0.111 7.111 21 C -0.064 4.064 22 C -0.077 4.077 23 C -0.043 4.043 24 N -0.098 5.098 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.192 0.808 29 H 0.257 0.743 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 16.331 -12.318 -4.311 20.905 hybrid contribution -0.619 0.539 0.300 0.874 sum 15.711 -11.779 -4.011 20.042 Atomic orbital electron populations 1.23286 0.76554 1.04613 1.02915 1.86082 1.22873 1.25665 1.87119 1.18726 0.89942 0.85048 0.91716 1.21421 1.03098 0.88938 1.09667 1.17780 0.88581 0.87968 0.94988 1.43958 1.15387 1.10852 1.61645 1.22013 0.80224 0.91923 0.75337 1.90610 1.72159 1.34945 1.40700 1.21779 0.97199 0.93003 1.04141 1.19400 0.90037 0.97986 0.96201 1.21048 0.97796 0.98421 1.39455 0.90802 1.24976 0.96767 0.96076 0.95335 1.69902 1.09165 1.28429 1.46341 0.86795 0.77977 0.84391 0.80336 1.20183 1.21361 1.18635 1.16864 0.88473 0.81279 1.13404 1.91511 1.82987 1.41771 1.94798 1.20650 1.00741 0.88373 0.96609 1.14850 0.87979 0.87922 1.16950 1.25090 0.93174 0.92602 0.93475 1.81222 1.09008 1.09850 1.09687 0.87667 0.91812 0.91110 0.80759 0.74292 0.88762 0.88629 0.95687 0.96069 0.92564 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.39 9.92 -18.98 -0.19 -3.57 16 3 C 0.20 2.16 6.69 -38.76 -0.26 1.90 16 4 C -0.21 -2.45 7.69 -39.32 -0.30 -2.75 16 5 C 0.21 2.32 6.43 -83.65 -0.54 1.78 16 6 N -0.67 -7.60 5.29 -9.81 -0.05 -7.66 16 7 C 0.51 7.63 7.63 -10.98 -0.08 7.54 16 8 O -0.51 -9.00 13.13 5.55 0.07 -8.93 16 9 C -0.12 -1.98 5.64 -27.88 -0.16 -2.14 16 10 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 11 C -0.53 -14.08 9.66 -34.44 -0.33 -14.41 16 12 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 15 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 19 C 0.02 0.21 7.29 -39.33 -0.29 -0.07 16 20 F -0.13 -1.27 16.79 2.25 0.04 -1.23 16 21 C -0.04 -0.36 9.72 -39.15 -0.38 -0.74 16 22 C -0.07 -0.73 5.76 -106.59 -0.61 -1.34 16 23 C 0.27 3.17 14.86 -22.47 -0.33 2.84 16 24 N -0.42 -5.74 18.54 41.84 0.78 -4.96 16 25 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 27 H 0.07 0.66 7.66 -51.93 -0.40 0.27 16 28 H 0.18 2.24 3.99 -52.49 -0.21 2.03 16 29 H 0.42 3.57 8.43 -40.82 -0.34 3.23 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.02 0.57 7.16 -51.93 -0.37 0.20 16 33 H 0.02 0.49 7.53 -51.93 -0.39 0.09 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -32.17 317.03 -4.35 -36.52 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -3.39 Total: -1.11 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.49 Total: -4.40 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 1.50 Total: -38.55 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.12 Total: -12.50 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.17 -4.35 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331482957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.926 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds