Wall clock time and date at job start Tue Mar 31 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35756 * 116.99491 * 2 1 4 4 C 1.38398 * 120.09254 * 0.02562 * 3 2 1 5 5 C 1.38797 * 120.05193 * 179.97438 * 4 3 2 6 6 N 1.39648 * 119.88382 * 179.97438 * 5 4 3 7 7 C 1.34774 * 119.99847 * 24.89001 * 6 5 4 8 8 O 1.21284 * 119.99935 * 5.52329 * 7 6 5 9 9 C 1.50706 * 119.99740 * 185.52136 * 7 6 5 10 10 C 1.53003 * 109.47029 * 180.02562 * 9 7 6 11 11 C 1.50689 * 109.47000 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00487 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00121 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00287 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99810 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46998 * 90.00004 * 15 13 11 17 17 H 1.48498 * 109.47355 * 210.00090 * 15 13 11 18 18 H 1.48505 * 109.46943 * 330.00094 * 15 13 11 19 19 C 1.39426 * 120.22923 * 359.97438 * 5 4 3 20 20 F 1.35105 * 119.90682 * 180.02562 * 19 5 4 21 21 C 1.37720 * 120.18147 * 359.97438 * 19 5 4 22 22 C 1.39906 * 119.94984 * 359.77272 * 21 19 5 23 23 C 1.43196 * 120.12043 * 180.25630 * 22 21 19 24 24 N 3.53039 * 165.84200 * 178.90859 * 2 1 3 25 25 H 1.08997 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47574 * 60.00164 * 1 2 3 27 27 H 1.08998 * 109.47125 * 299.99663 * 1 2 3 28 28 H 1.08002 * 119.97337 * 359.97438 * 4 3 2 29 29 H 0.96996 * 119.99707 * 204.88299 * 6 5 4 30 30 H 1.08998 * 109.46979 * 299.99462 * 9 7 6 31 31 H 1.08993 * 109.47167 * 60.00116 * 9 7 6 32 32 H 1.08997 * 109.46700 * 300.00261 * 10 9 7 33 33 H 1.09006 * 109.47007 * 59.99625 * 10 9 7 34 34 H 0.96999 * 119.99816 * 179.97438 * 14 13 11 35 35 H 1.08001 * 120.02724 * 180.02562 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2933 2.3715 0.0005 5 6 1.9242 3.6078 0.0011 6 7 1.1619 4.7779 0.0011 7 6 -0.0932 4.7645 0.4918 8 8 -0.5255 3.7642 1.0242 9 6 -0.9594 5.9926 0.3792 10 6 -2.3249 5.7132 1.0104 11 6 -3.1908 6.9413 0.8983 12 1 -2.8060 7.8320 0.4239 13 6 -4.4749 6.9277 1.4005 14 7 -5.2308 7.9994 1.3022 15 14 -5.1408 5.3870 2.2204 16 1 -4.8386 5.4297 3.6737 17 1 -6.6108 5.3168 2.0223 18 1 -4.5022 4.1898 1.6170 19 6 3.3163 3.6855 0.0016 20 9 3.9236 4.8923 0.0027 21 6 4.0739 2.5354 0.0022 22 6 3.4458 1.2852 0.0070 23 6 4.2300 0.0871 0.0131 24 7 4.8522 -0.8634 0.0164 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 0.2147 2.3161 0.0005 29 1 1.5359 5.6003 -0.3520 30 1 -0.4821 6.8229 0.8996 31 1 -1.0904 6.2496 -0.6719 32 1 -2.8024 4.8827 0.4904 33 1 -2.1935 5.4563 2.0616 34 1 -6.1343 7.9897 1.6551 35 1 5.1521 2.5985 0.0030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331482957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:26 Heat of formation + Delta-G solvation = -84.373908 kcal Electronic energy + Delta-G solvation = -22204.211275 eV Core-core repulsion = 18502.677277 eV Total energy + Delta-G solvation = -3701.533998 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.91842 -41.99004 -40.77847 -38.63594 -37.58700 -35.84689 -35.54557 -33.44098 -31.63862 -31.03232 -28.48171 -28.02158 -25.38444 -23.66968 -23.10276 -21.37795 -20.60060 -19.56773 -19.22970 -18.37733 -17.87123 -17.48832 -17.09812 -16.80772 -16.50541 -16.39333 -16.21621 -15.42348 -15.35258 -14.85546 -14.81116 -14.65125 -14.54723 -14.51806 -14.01716 -13.46883 -13.41885 -13.39726 -13.07448 -12.90596 -12.57174 -12.38414 -12.11269 -11.96459 -11.73423 -11.40471 -11.37632 -10.85844 -10.75470 -9.77633 -9.13550 -8.28585 -6.31942 -0.56737 0.01038 1.30571 1.37012 1.39538 1.51734 1.57322 1.74393 1.87758 2.04004 2.37173 2.60097 2.66299 3.07890 3.09838 3.51416 3.70282 3.88946 4.11180 4.18920 4.32325 4.34447 4.40256 4.48764 4.52320 4.68895 4.76023 4.97756 4.98868 5.06158 5.37115 5.46463 5.50311 5.63482 6.01861 6.18774 6.27461 6.43252 6.75341 6.95885 7.33583 8.87024 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022311 B = 0.003700 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.698365 B = 7566.631974 C = 8681.666687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.318 6.318 3 C 0.194 3.806 4 C -0.218 4.218 5 C 0.196 3.804 6 N -0.659 5.659 7 C 0.523 3.477 8 O -0.542 6.542 9 C -0.116 4.116 10 C 0.003 3.997 11 C -0.528 4.528 12 H 0.050 0.950 13 C 0.011 3.989 14 N -0.946 5.946 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.252 1.252 19 C 0.030 3.970 20 F -0.128 7.128 21 C -0.021 4.021 22 C -0.072 4.072 23 C 0.291 3.709 24 N -0.457 5.457 25 H 0.127 0.873 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.163 0.837 29 H 0.434 0.566 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.018 0.982 33 H 0.013 0.987 34 H 0.266 0.734 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.569 -10.976 -4.917 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.230 6.230 3 C 0.143 3.857 4 C -0.239 4.239 5 C 0.096 3.904 6 N -0.304 5.304 7 C 0.314 3.686 8 O -0.418 6.418 9 C -0.155 4.155 10 C -0.035 4.035 11 C -0.567 4.567 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.587 5.587 15 Si 0.763 3.237 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.176 1.176 19 C 0.008 3.992 20 F -0.107 7.107 21 C -0.042 4.042 22 C -0.077 4.077 23 C -0.024 4.024 24 N -0.134 5.134 25 H 0.145 0.855 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.180 0.820 29 H 0.274 0.726 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 18.051 -13.162 -4.504 22.790 hybrid contribution -1.079 0.853 0.304 1.409 sum 16.972 -12.309 -4.200 21.382 Atomic orbital electron populations 1.23438 0.75495 1.06000 1.02692 1.86072 1.24023 1.25845 1.87079 1.18800 0.90272 0.84911 0.91682 1.21295 1.02640 0.89462 1.10486 1.17876 0.89225 0.87506 0.95750 1.43590 1.14199 1.11731 1.60836 1.21510 0.81085 0.90729 0.75298 1.90617 1.73110 1.35712 1.42363 1.21566 0.94715 0.94361 1.04888 1.19257 0.92538 0.95488 0.96176 1.21436 0.98217 0.99203 1.37798 0.93174 1.25840 0.97475 0.98945 0.96400 1.70032 1.09736 1.30648 1.48261 0.85824 0.77397 0.81024 0.79432 1.19679 1.21001 1.17578 1.16779 0.87730 0.81713 1.13017 1.91531 1.82802 1.41611 1.94742 1.20898 1.02115 0.87034 0.94202 1.14901 0.87483 0.88026 1.17322 1.25193 0.92413 0.92349 0.92415 1.81245 1.10248 1.10810 1.11055 0.85528 0.91279 0.92088 0.81977 0.72584 0.87228 0.86900 0.96359 0.96864 0.92504 0.79639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.32 -6.71 9.92 -90.82 -0.90 -7.61 16 3 C 0.19 3.99 6.69 22.80 0.15 4.14 16 4 C -0.22 -4.78 7.69 22.44 0.17 -4.61 16 5 C 0.20 3.95 6.43 38.32 0.25 4.20 16 6 N -0.66 -13.35 5.29 -303.35 -1.61 -14.96 16 7 C 0.52 14.64 7.63 87.66 0.67 15.31 16 8 O -0.54 -18.56 13.13 -3.04 -0.04 -18.60 16 9 C -0.12 -3.59 5.64 29.85 0.17 -3.42 16 10 C 0.00 0.15 3.33 29.85 0.10 0.25 16 11 C -0.53 -28.25 9.66 25.60 0.25 -28.00 16 12 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 13 C 0.01 0.61 5.47 84.66 0.46 1.08 16 14 N -0.95 -57.14 13.96 21.45 0.30 -56.84 16 15 Si 0.94 43.71 27.47 68.60 1.88 45.60 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 19 C 0.03 0.48 7.29 22.43 0.16 0.65 16 20 F -0.13 -2.03 16.79 44.97 0.75 -1.28 16 21 C -0.02 -0.29 9.72 22.55 0.22 -0.07 16 22 C -0.07 -1.30 5.76 -21.14 -0.12 -1.42 16 23 C 0.29 6.27 14.86 88.33 1.31 7.58 16 24 N -0.46 -11.86 18.54 19.00 0.35 -11.51 16 25 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 27 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 28 H 0.16 4.06 3.99 -2.91 -0.01 4.05 16 29 H 0.43 6.17 8.43 -92.71 -0.78 5.39 16 30 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.02 0.81 7.16 -2.39 -0.02 0.80 16 33 H 0.01 0.59 7.53 -2.38 -0.02 0.57 16 34 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.51 317.03 5.97 -63.53 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.32 Total: 4.58 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.90 Total: -2.91 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -0.95 Total: -83.31 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.94 Total: -26.21 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.75 Total: -1.28 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -69.51 5.97 -63.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331482957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.839 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds