Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00107 * 2 1 4 4 H 1.48492 * 109.47126 * 180.27780 * 3 2 1 5 5 H 1.48497 * 109.46972 * 300.27826 * 3 2 1 6 6 H 1.48497 * 109.47154 * 60.27459 * 3 2 1 7 7 C 1.37878 * 119.99779 * 180.27635 * 2 1 3 8 8 H 1.08002 * 120.00111 * 185.66487 * 7 2 1 9 9 C 1.50696 * 120.00080 * 5.66719 * 7 2 1 10 10 C 1.53003 * 115.54672 * 275.17514 * 9 7 2 11 11 S 1.81397 * 109.47503 * 296.13770 * 10 9 7 12 12 C 1.81397 * 103.00282 * 184.91388 * 11 10 9 13 13 H 1.09001 * 110.26775 * 57.18361 * 12 11 10 14 14 C 1.54345 * 110.30415 * 295.11327 * 12 11 10 15 15 C 1.54349 * 102.39336 * 214.72483 * 14 12 11 16 16 C 1.51360 * 105.16492 * 26.34859 * 15 14 12 17 17 C 1.38390 * 109.79537 * 342.72769 * 16 15 14 18 18 C 1.38326 * 119.84711 * 179.90121 * 17 16 15 19 19 C 1.38162 * 120.31308 * 0.17823 * 18 17 16 20 20 C 1.38164 * 119.96673 * 359.90911 * 19 18 17 21 21 C 1.38378 * 119.90563 * 0.02562 * 20 19 18 22 22 F 1.35095 * 119.91934 * 180.02562 * 21 20 19 23 23 C 1.52995 * 117.50224 * 129.50940 * 9 7 2 24 24 C 1.52999 * 117.50394 * 60.84330 * 9 7 2 25 25 H 0.97000 * 120.00255 * 4.71736 * 1 2 3 26 26 H 1.09007 * 109.47230 * 56.14540 * 10 9 7 27 27 H 1.09000 * 109.47067 * 176.13798 * 10 9 7 28 28 H 1.09003 * 110.82556 * 332.95544 * 14 12 11 29 29 H 1.09004 * 110.82396 * 96.50154 * 14 12 11 30 30 H 1.09005 * 110.29934 * 145.26752 * 15 14 12 31 31 H 1.09000 * 110.30298 * 267.32460 * 15 14 12 32 32 H 1.07998 * 119.82365 * 180.08989 * 18 17 16 33 33 H 1.07997 * 120.01393 * 179.89065 * 19 18 17 34 34 H 1.08002 * 120.05108 * 179.97438 * 20 19 18 35 35 H 1.09003 * 117.49653 * 359.97438 * 23 9 7 36 36 H 1.09002 * 117.50257 * 145.01951 * 23 9 7 37 37 H 1.08998 * 117.50273 * 214.98003 * 24 9 7 38 38 H 1.09002 * 117.49251 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0068 5 1 1.8853 2.3993 -1.2091 6 1 1.8955 2.3935 1.2158 7 6 2.0045 -1.1941 -0.0058 8 1 3.0806 -1.1969 0.0866 9 6 1.2565 -2.4953 -0.1409 10 6 0.7039 -3.0771 1.1618 11 16 2.0789 -3.4972 2.2678 12 6 1.2471 -4.2967 3.6676 13 1 0.6636 -5.1503 3.3226 14 6 0.3375 -3.2863 4.3982 15 6 0.4602 -3.7342 5.8702 16 6 1.8102 -4.4119 5.9666 17 6 2.2627 -4.7375 4.7000 18 6 3.4848 -5.3669 4.5462 19 6 4.2543 -5.6754 5.6515 20 6 3.8042 -5.3532 6.9174 21 6 2.5829 -4.7222 7.0756 22 9 2.1428 -4.4066 8.3132 23 6 1.7412 -3.4816 -1.2053 24 6 0.4360 -2.7096 -1.4143 25 1 -0.4850 0.8372 -0.0691 26 1 0.0610 -2.3409 1.6446 27 1 0.1265 -3.9752 0.9425 28 1 0.7074 -2.2690 4.2706 29 1 -0.6926 -3.3714 4.0520 30 1 0.4229 -2.8695 6.5329 31 1 -0.3357 -4.4359 6.1197 32 1 3.8382 -5.6195 3.5575 33 1 5.2069 -6.1685 5.5260 34 1 4.4044 -5.5941 7.7824 35 1 2.6010 -3.1891 -1.8082 36 1 1.6660 -4.5449 -0.9778 37 1 -0.4973 -3.2654 -1.3242 38 1 0.4369 -1.9092 -2.1542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333736958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -5.470872 kcal Electronic energy + Delta-G solvation = -20399.439197 eV Core-core repulsion = 17247.619906 eV Total energy + Delta-G solvation = -3151.819292 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.87653 -39.91165 -36.58190 -35.68479 -31.94399 -30.98585 -29.28426 -27.70656 -27.19868 -25.29768 -22.70349 -21.45106 -21.13472 -20.91662 -19.22095 -17.33938 -16.49502 -16.25732 -15.97426 -15.65064 -15.34623 -14.63756 -14.56980 -14.10500 -13.79587 -13.60183 -13.16601 -13.14789 -12.84122 -12.38157 -12.07144 -11.84951 -11.68466 -11.45689 -11.27531 -11.12314 -10.99325 -10.93431 -10.85561 -10.47093 -10.18656 -9.64269 -9.35835 -8.82756 -8.64265 -8.61182 -8.44482 -8.02636 -6.84339 -6.05574 -4.10637 1.08268 1.15218 2.36407 3.29024 3.37952 3.41902 3.43233 3.56605 4.18435 4.35729 4.41832 4.45977 4.82421 4.99803 5.13454 5.22344 5.24198 5.30667 5.36512 5.52850 5.54199 5.67622 5.87142 5.90840 5.95092 6.10901 6.14293 6.19183 6.30057 6.32340 6.38526 6.48563 6.51137 6.71789 6.80015 6.85047 7.04797 7.38555 7.46928 7.88081 8.38430 8.91443 9.55847 11.03549 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.004284 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.342145 B = 6534.175643 C = 6922.143413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.055 3.945 10 C -0.028 4.028 11 S -0.223 6.223 12 C -0.039 4.039 13 H 0.096 0.904 14 C -0.114 4.114 15 C -0.075 4.075 16 C -0.125 4.125 17 C -0.035 4.035 18 C -0.103 4.103 19 C -0.094 4.094 20 C -0.156 4.156 21 C 0.104 3.896 22 F -0.143 7.143 23 C -0.204 4.204 24 C -0.149 4.149 25 H 0.259 0.741 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -10.796 10.886 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.130 4.130 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.176 4.176 11 S 0.009 5.991 12 C -0.167 4.167 13 H 0.114 0.886 14 C -0.153 4.153 15 C -0.113 4.113 16 C -0.128 4.128 17 C -0.036 4.036 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.175 4.175 21 C 0.085 3.915 22 F -0.122 7.122 23 C -0.242 4.242 24 C -0.189 4.189 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.278 -10.462 10.829 15.410 hybrid contribution -1.041 0.744 0.319 1.319 sum 2.238 -9.718 11.148 14.957 Atomic orbital electron populations 1.70010 1.05844 1.26650 1.49337 1.24925 0.94758 0.98835 0.94470 0.86612 0.80488 0.83928 0.77527 1.19610 1.21065 1.21011 1.20416 0.92836 0.88454 1.50399 0.91974 1.18455 0.98067 0.93907 0.84235 1.23110 0.95637 1.00499 0.98397 1.87042 1.18051 1.75724 1.18284 1.22658 0.96945 1.00278 0.96840 0.88637 1.22747 0.99830 0.99802 0.92925 1.21004 0.92525 0.99734 0.97997 1.20629 0.98038 1.01705 0.92397 1.19897 0.94406 0.96425 0.92846 1.20778 0.93183 0.98444 0.99768 1.20880 0.99778 0.99341 0.91161 1.21013 0.95326 1.02074 0.99083 1.17264 0.94259 1.01334 0.78620 1.91464 1.89590 1.91066 1.40076 1.23014 0.98380 0.95744 1.07054 1.22585 0.92231 1.01239 1.02869 0.93138 0.89613 0.93563 0.88894 0.90117 0.90274 0.90074 0.84808 0.84784 0.84777 0.90295 0.91478 0.91929 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.22 12.92 55.43 0.72 -23.50 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 7 C -0.48 -12.87 8.44 -34.44 -0.29 -13.16 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.06 1.31 1.35 -155.66 -0.21 1.10 16 10 C -0.03 -0.60 5.61 37.16 0.21 -0.39 16 11 S -0.22 -4.32 20.51 -107.50 -2.20 -6.52 16 12 C -0.04 -0.60 3.39 -26.85 -0.09 -0.69 16 13 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.11 -1.64 6.41 -25.32 -0.16 -1.81 16 15 C -0.07 -0.95 6.76 -26.85 -0.18 -1.13 16 16 C -0.13 -1.75 6.13 -104.08 -0.64 -2.38 16 17 C -0.03 -0.50 5.62 -104.20 -0.59 -1.09 16 18 C -0.10 -1.34 9.74 -39.58 -0.39 -1.73 16 19 C -0.09 -1.03 10.04 -39.64 -0.40 -1.43 16 20 C -0.16 -1.77 10.02 -39.56 -0.40 -2.16 16 21 C 0.10 1.38 7.30 -39.37 -0.29 1.10 16 22 F -0.14 -1.93 17.25 2.25 0.04 -1.89 16 23 C -0.20 -4.37 9.96 -26.69 -0.27 -4.64 16 24 C -0.15 -3.39 9.43 -26.69 -0.25 -3.64 16 25 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 26 H 0.09 2.00 8.14 -51.92 -0.42 1.58 16 27 H 0.05 0.90 8.10 -51.92 -0.42 0.48 16 28 H 0.09 1.53 7.88 -51.93 -0.41 1.12 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -27.89 336.71 -10.88 -38.76 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.45 Total: 2.24 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: -4.03 Total: -30.18 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.72 Total: -23.50 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -2.20 Total: -6.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.89 -10.88 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333736958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.292 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds