Wall clock time and date at job start Tue Mar 31 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00107 * 2 1 4 4 H 1.48492 * 109.47126 * 180.27780 * 3 2 1 5 5 H 1.48497 * 109.46972 * 300.27826 * 3 2 1 6 6 H 1.48497 * 109.47154 * 60.27459 * 3 2 1 7 7 C 1.37878 * 119.99779 * 180.27635 * 2 1 3 8 8 H 1.08002 * 120.00111 * 185.66487 * 7 2 1 9 9 C 1.50696 * 120.00080 * 5.66719 * 7 2 1 10 10 C 1.53003 * 115.54672 * 275.17514 * 9 7 2 11 11 S 1.81397 * 109.47503 * 296.13770 * 10 9 7 12 12 C 1.81397 * 103.00282 * 184.91388 * 11 10 9 13 13 H 1.09001 * 110.26775 * 57.18361 * 12 11 10 14 14 C 1.54345 * 110.30415 * 295.11327 * 12 11 10 15 15 C 1.54349 * 102.39336 * 214.72483 * 14 12 11 16 16 C 1.51360 * 105.16492 * 26.34859 * 15 14 12 17 17 C 1.38390 * 109.79537 * 342.72769 * 16 15 14 18 18 C 1.38326 * 119.84711 * 179.90121 * 17 16 15 19 19 C 1.38162 * 120.31308 * 0.17823 * 18 17 16 20 20 C 1.38164 * 119.96673 * 359.90911 * 19 18 17 21 21 C 1.38378 * 119.90563 * 0.02562 * 20 19 18 22 22 F 1.35095 * 119.91934 * 180.02562 * 21 20 19 23 23 C 1.52995 * 117.50224 * 129.50940 * 9 7 2 24 24 C 1.52999 * 117.50394 * 60.84330 * 9 7 2 25 25 H 0.97000 * 120.00255 * 4.71736 * 1 2 3 26 26 H 1.09007 * 109.47230 * 56.14540 * 10 9 7 27 27 H 1.09000 * 109.47067 * 176.13798 * 10 9 7 28 28 H 1.09003 * 110.82556 * 332.95544 * 14 12 11 29 29 H 1.09004 * 110.82396 * 96.50154 * 14 12 11 30 30 H 1.09005 * 110.29934 * 145.26752 * 15 14 12 31 31 H 1.09000 * 110.30298 * 267.32460 * 15 14 12 32 32 H 1.07998 * 119.82365 * 180.08989 * 18 17 16 33 33 H 1.07997 * 120.01393 * 179.89065 * 19 18 17 34 34 H 1.08002 * 120.05108 * 179.97438 * 20 19 18 35 35 H 1.09003 * 117.49653 * 359.97438 * 23 9 7 36 36 H 1.09002 * 117.50257 * 145.01951 * 23 9 7 37 37 H 1.08998 * 117.50273 * 214.98003 * 24 9 7 38 38 H 1.09002 * 117.49251 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0068 5 1 1.8853 2.3993 -1.2091 6 1 1.8955 2.3935 1.2158 7 6 2.0045 -1.1941 -0.0058 8 1 3.0806 -1.1969 0.0866 9 6 1.2565 -2.4953 -0.1409 10 6 0.7039 -3.0771 1.1618 11 16 2.0789 -3.4972 2.2678 12 6 1.2471 -4.2967 3.6676 13 1 0.6636 -5.1503 3.3226 14 6 0.3375 -3.2863 4.3982 15 6 0.4602 -3.7342 5.8702 16 6 1.8102 -4.4119 5.9666 17 6 2.2627 -4.7375 4.7000 18 6 3.4848 -5.3669 4.5462 19 6 4.2543 -5.6754 5.6515 20 6 3.8042 -5.3532 6.9174 21 6 2.5829 -4.7222 7.0756 22 9 2.1428 -4.4066 8.3132 23 6 1.7412 -3.4816 -1.2053 24 6 0.4360 -2.7096 -1.4143 25 1 -0.4850 0.8372 -0.0691 26 1 0.0610 -2.3409 1.6446 27 1 0.1265 -3.9752 0.9425 28 1 0.7074 -2.2690 4.2706 29 1 -0.6926 -3.3714 4.0520 30 1 0.4229 -2.8695 6.5329 31 1 -0.3357 -4.4359 6.1197 32 1 3.8382 -5.6195 3.5575 33 1 5.2069 -6.1685 5.5260 34 1 4.4044 -5.5941 7.7824 35 1 2.6010 -3.1891 -1.8082 36 1 1.6660 -4.5449 -0.9778 37 1 -0.4973 -3.2654 -1.3242 38 1 0.4369 -1.9092 -2.1542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333736958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:58 Heat of formation + Delta-G solvation = -15.918735 kcal Electronic energy + Delta-G solvation = -20399.892251 eV Core-core repulsion = 17247.619906 eV Total energy + Delta-G solvation = -3152.272345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.87772 -40.92846 -38.39907 -36.70071 -33.98152 -31.99063 -30.37276 -29.27092 -28.36947 -27.30387 -23.72606 -22.91338 -22.46769 -22.00917 -21.05744 -18.50303 -17.98746 -17.53841 -17.16873 -16.64123 -16.60393 -16.50218 -15.92353 -15.56083 -15.07955 -15.02279 -14.58972 -14.39595 -13.90868 -13.81359 -13.46040 -13.25477 -13.15515 -12.94920 -12.82273 -12.59620 -12.39087 -12.28348 -12.16077 -12.05261 -11.96226 -11.47420 -10.89786 -10.64182 -10.44875 -9.83862 -9.65387 -9.60339 -8.38538 -8.10171 -6.19417 0.06555 0.17919 0.98928 1.38394 1.42675 1.52317 1.91612 2.44094 2.58829 3.18918 3.20007 3.30728 3.41455 3.55999 3.87932 3.97936 4.10641 4.12474 4.22733 4.38048 4.44643 4.49017 4.52597 4.63268 4.70497 4.71193 4.84624 4.92203 4.97883 5.01910 5.11781 5.12176 5.18549 5.25063 5.36161 5.48912 5.61457 5.64120 5.79681 5.90747 6.40222 6.84526 7.48490 8.98123 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019778 B = 0.004284 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.342145 B = 6534.175643 C = 6922.143413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.032 3.968 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.493 4.493 8 H 0.045 0.955 9 C 0.027 3.973 10 C -0.016 4.016 11 S -0.254 6.254 12 C -0.024 4.024 13 H 0.107 0.893 14 C -0.113 4.113 15 C -0.069 4.069 16 C -0.137 4.137 17 C -0.057 4.057 18 C -0.112 4.112 19 C -0.085 4.085 20 C -0.147 4.147 21 C 0.089 3.911 22 F -0.147 7.147 23 C -0.182 4.182 24 C -0.152 4.152 25 H 0.259 0.741 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.247 -12.236 12.100 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.168 4.168 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.210 1.210 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.164 4.164 11 S -0.022 6.022 12 C -0.152 4.152 13 H 0.125 0.875 14 C -0.152 4.152 15 C -0.107 4.107 16 C -0.140 4.140 17 C -0.059 4.059 18 C -0.131 4.131 19 C -0.103 4.103 20 C -0.166 4.166 21 C 0.070 3.930 22 F -0.126 7.126 23 C -0.219 4.219 24 C -0.192 4.192 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.186 0.814 34 H 0.181 0.819 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.161 -11.900 12.029 17.425 hybrid contribution -1.248 1.130 0.013 1.684 sum 2.914 -10.770 12.042 16.416 Atomic orbital electron populations 1.70084 1.06700 1.27143 1.50302 1.25495 0.95455 1.01313 0.94526 0.85810 0.79324 0.80893 0.77507 1.19666 1.20491 1.20978 1.20563 0.92241 0.90185 1.50066 0.93683 1.18563 0.99119 0.94003 0.85732 1.22787 0.95852 1.00219 0.97583 1.86992 1.18456 1.76468 1.20268 1.22674 0.97225 1.00212 0.95116 0.87483 1.22664 0.99975 0.98171 0.94406 1.20987 0.92944 1.00262 0.96498 1.20752 0.98601 1.02062 0.92559 1.19908 0.95237 0.98158 0.92575 1.20984 0.93004 0.98407 1.00732 1.21252 1.00546 0.98297 0.90214 1.21394 0.94554 1.00372 1.00294 1.17495 0.95062 1.02137 0.78309 1.91454 1.89750 1.91207 1.40147 1.22993 0.97334 0.96559 1.05030 1.22511 0.93571 1.01203 1.01902 0.93186 0.92366 0.91859 0.91561 0.89188 0.89948 0.88111 0.84734 0.81400 0.81938 0.90598 0.89019 0.90426 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.51 12.92 21.45 0.28 -50.24 16 2 C 0.03 1.76 5.39 84.65 0.46 2.22 16 3 Si 0.94 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.49 -26.67 8.44 25.60 0.22 -26.45 16 8 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 9 C 0.03 1.30 1.35 -52.93 -0.07 1.23 16 10 C -0.02 -0.69 5.61 71.98 0.40 -0.28 16 11 S -0.25 -9.82 20.51 -56.49 -1.16 -10.98 16 12 C -0.02 -0.72 3.39 30.52 0.10 -0.62 16 13 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 14 C -0.11 -3.24 6.41 31.51 0.20 -3.04 16 15 C -0.07 -1.68 6.76 30.52 0.21 -1.47 16 16 C -0.14 -3.64 6.13 -19.51 -0.12 -3.76 16 17 C -0.06 -1.60 5.62 -19.59 -0.11 -1.71 16 18 C -0.11 -2.73 9.74 22.27 0.22 -2.51 16 19 C -0.09 -1.61 10.04 22.23 0.22 -1.38 16 20 C -0.15 -2.87 10.02 22.29 0.22 -2.65 16 21 C 0.09 2.18 7.30 22.41 0.16 2.34 16 22 F -0.15 -3.69 17.25 44.97 0.78 -2.91 16 23 C -0.18 -7.61 9.96 30.62 0.30 -7.30 16 24 C -0.15 -6.89 9.43 30.62 0.29 -6.60 16 25 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 26 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.06 2.43 8.10 -2.39 -0.02 2.41 16 28 H 0.07 2.25 7.88 -2.39 -0.02 2.23 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 35 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.08 3.22 8.14 -2.39 -0.02 3.21 16 38 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -60.02 336.71 5.67 -54.35 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 1.04 Total: 16.00 kcal Atomic # 6 Polarization: -54.68 SS G_CDS: 2.71 Total: -51.97 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.28 Total: -50.24 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -9.82 SS G_CDS: -1.16 Total: -10.98 kcal Total: -60.02 5.67 -54.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333736958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.432 kcal (2) G-P(sol) polarization free energy of solvation -60.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds