Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00067 * 2 1 4 4 C 1.53003 * 109.46864 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47123 * 65.00096 * 4 3 2 6 6 C 1.36791 * 119.99840 * 83.87270 * 5 4 3 7 7 H 1.08000 * 120.00274 * 312.07442 * 6 5 4 8 8 C 1.39108 * 119.99937 * 132.35317 * 6 5 4 9 9 N 1.31328 * 120.00127 * 338.78609 * 8 6 5 10 10 Si 1.86799 * 119.99975 * 158.78325 * 8 6 5 11 11 H 1.48492 * 109.47178 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46998 * 120.00229 * 10 8 6 13 13 H 1.48495 * 109.47092 * 239.99905 * 10 8 6 14 14 C 1.34776 * 120.00399 * 263.87253 * 5 4 3 15 15 O 1.21603 * 120.00366 * 173.30480 * 14 5 4 16 16 C 1.47609 * 119.99484 * 353.31022 * 14 5 4 17 17 C 1.39804 * 120.01833 * 302.54164 * 16 14 5 18 18 C 1.37582 * 120.02705 * 179.72271 * 17 16 14 19 19 C 1.39797 * 120.06782 * 0.55549 * 18 17 16 20 20 C 1.43206 * 119.97061 * 179.70281 * 19 18 17 21 21 N 6.80562 * 112.54106 * 135.24934 * 2 1 3 22 22 C 1.39580 * 120.05195 * 359.72150 * 19 18 17 23 23 C 1.38049 * 119.96595 * 0.02562 * 22 19 18 24 24 F 1.35105 * 120.03609 * 179.97438 * 23 22 19 25 25 H 1.08999 * 109.46956 * 300.00205 * 1 2 3 26 26 H 1.08997 * 109.47048 * 59.99520 * 1 2 3 27 27 H 1.08993 * 109.47517 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46908 * 60.00193 * 3 2 1 29 29 H 1.09000 * 109.47512 * 299.99969 * 3 2 1 30 30 H 1.08997 * 109.47018 * 304.99697 * 4 3 2 31 31 H 1.09000 * 109.46796 * 185.00380 * 4 3 2 32 32 H 0.96993 * 120.00308 * 185.03913 * 9 8 6 33 33 H 1.07998 * 119.98431 * 0.02562 * 17 16 14 34 34 H 1.07990 * 119.96331 * 180.25833 * 18 17 16 35 35 H 1.07994 * 120.01831 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1470 1.3299 -2.3713 7 1 3.3796 2.0290 -2.6692 8 6 5.3060 1.2042 -3.1302 9 7 6.3911 0.6960 -2.5926 10 14 5.3190 1.7582 -4.9141 11 1 3.9813 2.2913 -5.2766 12 1 6.3405 2.8207 -5.0950 13 1 5.6458 0.6034 -5.7886 14 6 4.2148 -0.7618 -1.2983 15 8 4.4622 -1.2975 -2.3616 16 6 4.1751 -1.5635 -0.0596 17 6 5.0086 -1.2344 1.0136 18 6 4.9676 -1.9781 2.1704 19 6 4.1013 -3.0706 2.2704 20 6 4.0649 -3.8471 3.4731 21 7 4.0379 -4.4640 4.4253 22 6 3.2720 -3.4055 1.1987 23 6 3.3078 -2.6574 0.0391 24 9 2.5061 -2.9806 -0.9992 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1764 0.0903 32 1 7.2188 0.6754 -3.0978 33 1 5.6813 -0.3931 0.9362 34 1 5.6089 -1.7204 3.0002 35 1 2.6026 -4.2494 1.2767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336521693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -50.998066 kcal Electronic energy + Delta-G solvation = -23702.891533 eV Core-core repulsion = 20002.804819 eV Total energy + Delta-G solvation = -3700.086713 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.40563 -39.50012 -38.10132 -37.16111 -36.21706 -34.32008 -32.32250 -31.10568 -30.43694 -28.90122 -25.95573 -25.66373 -23.92985 -22.55685 -22.05268 -19.85182 -19.07940 -17.32464 -16.46314 -16.27717 -15.85720 -15.73167 -15.32854 -15.20585 -14.86548 -14.49856 -14.25268 -13.83873 -13.81942 -13.79872 -13.32107 -13.13520 -12.63921 -12.45612 -12.13482 -11.91027 -11.78859 -11.70185 -11.43547 -11.22643 -11.07356 -10.88963 -10.69370 -10.60009 -10.23984 -9.28544 -8.83644 -8.79869 -8.56369 -8.26151 -7.28107 -6.30210 -4.00150 0.70171 1.35763 2.62357 2.88597 3.23996 3.36302 3.37862 3.76823 3.79092 4.11084 4.19580 4.26990 4.60220 4.74642 4.92351 5.07650 5.18920 5.35454 5.42227 5.48714 5.58153 5.74089 5.75418 5.81287 5.86408 5.89350 6.11851 6.19103 6.26814 6.34700 6.42663 6.52663 6.92511 7.43391 7.51429 7.56576 8.15620 8.90164 9.01546 9.46443 10.10613 10.79444 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.005890 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.782784 B = 4752.999229 C = 5343.662888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.097 3.903 5 N -0.434 5.434 6 C -0.347 4.347 7 H 0.079 0.921 8 C 0.078 3.922 9 N -0.839 5.839 10 Si 0.914 3.086 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.278 1.278 14 C 0.529 3.471 15 O -0.534 6.534 16 C -0.078 4.078 17 C -0.074 4.074 18 C -0.087 4.087 19 C -0.016 4.016 20 C 0.267 3.733 21 N -0.428 5.428 22 C -0.113 4.113 23 C 0.141 3.859 24 F -0.121 7.121 25 H 0.033 0.967 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.269 0.731 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 0.038 8.573 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C -0.032 4.032 4 C -0.027 4.027 5 N -0.155 5.155 6 C -0.474 4.474 7 H 0.096 0.904 8 C -0.133 4.133 9 N -0.472 5.472 10 Si 0.741 3.259 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.204 1.204 14 C 0.316 3.684 15 O -0.412 6.412 16 C -0.084 4.084 17 C -0.093 4.093 18 C -0.107 4.107 19 C -0.019 4.019 20 C -0.048 4.048 21 N -0.103 5.103 22 C -0.135 4.135 23 C 0.120 3.880 24 F -0.099 7.099 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.683 -1.454 9.381 11.064 hybrid contribution -0.292 0.724 -1.336 1.548 sum -5.974 -0.730 8.045 10.047 Atomic orbital electron populations 1.22629 0.82255 1.02057 0.99208 1.87953 1.18600 1.28049 1.95226 1.23086 0.95864 0.84694 0.99559 1.21801 0.91195 0.99964 0.89755 1.42923 1.60384 1.04053 1.08140 1.18947 1.02908 1.22467 1.03029 0.90372 1.25338 0.94272 0.94340 0.99383 1.69744 0.99729 1.40499 1.37222 0.86128 0.78161 0.77861 0.83736 1.19386 1.21097 1.20413 1.17584 0.82088 0.82343 0.86426 1.90661 1.50340 1.70324 1.29911 1.20880 0.95176 0.95150 0.97182 1.21192 0.97720 0.99647 0.90693 1.21042 0.97615 0.93546 0.98517 1.15607 1.01303 0.96517 0.88516 1.25566 0.93359 0.93092 0.92772 1.81175 1.08568 1.09452 1.11129 1.20873 1.00441 1.00759 0.91423 1.17265 0.91349 0.94655 0.84713 1.91551 1.70683 1.91637 1.56035 0.94855 0.94496 0.90299 0.93786 0.92908 0.91060 0.89558 0.92141 0.83391 0.84500 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.49 10.15 -35.23 -0.36 -6.84 16 3 C 0.05 0.73 6.24 37.16 0.23 0.97 16 4 C 0.10 1.75 5.66 -4.04 -0.02 1.73 16 5 N -0.43 -10.22 2.42 -115.98 -0.28 -10.50 16 6 C -0.35 -9.01 9.03 -15.02 -0.14 -9.15 16 7 H 0.08 1.97 7.92 -52.49 -0.42 1.55 16 8 C 0.08 2.08 4.34 -17.44 -0.08 2.00 16 9 N -0.84 -23.27 12.49 55.50 0.69 -22.58 16 10 Si 0.91 21.13 29.61 -169.99 -5.03 16.10 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.53 13.06 5.77 -12.44 -0.07 12.99 16 15 O -0.53 -15.70 15.55 5.27 0.08 -15.62 16 16 C -0.08 -1.53 4.49 -104.85 -0.47 -2.00 16 17 C -0.07 -1.16 7.52 -39.24 -0.30 -1.45 16 18 C -0.09 -1.08 9.73 -39.24 -0.38 -1.46 16 19 C -0.02 -0.20 5.73 -106.89 -0.61 -0.81 16 20 C 0.27 3.48 15.31 -22.51 -0.34 3.14 16 21 N -0.43 -6.26 18.53 41.79 0.77 -5.49 16 22 C -0.11 -1.58 9.71 -39.15 -0.38 -1.96 16 23 C 0.14 2.51 7.27 -39.01 -0.28 2.23 16 24 F -0.12 -2.41 16.72 2.25 0.04 -2.37 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.16 4.69 -51.93 -0.24 0.91 16 31 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.15 2.30 7.83 -52.49 -0.41 1.89 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -32.61 322.28 -4.54 -37.15 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.58 Total: -2.49 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -1.73 Total: 7.80 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 1.19 Total: -38.57 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.28 Total: -22.47 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.61 -4.54 -37.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336521693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.849 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds