Wall clock time and date at job start Tue Mar 31 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00067 * 2 1 4 4 C 1.53003 * 109.46864 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47123 * 65.00096 * 4 3 2 6 6 C 1.36791 * 119.99840 * 83.87270 * 5 4 3 7 7 H 1.08000 * 120.00274 * 312.07442 * 6 5 4 8 8 C 1.39108 * 119.99937 * 132.35317 * 6 5 4 9 9 N 1.31328 * 120.00127 * 338.78609 * 8 6 5 10 10 Si 1.86799 * 119.99975 * 158.78325 * 8 6 5 11 11 H 1.48492 * 109.47178 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46998 * 120.00229 * 10 8 6 13 13 H 1.48495 * 109.47092 * 239.99905 * 10 8 6 14 14 C 1.34776 * 120.00399 * 263.87253 * 5 4 3 15 15 O 1.21603 * 120.00366 * 173.30480 * 14 5 4 16 16 C 1.47609 * 119.99484 * 353.31022 * 14 5 4 17 17 C 1.39804 * 120.01833 * 302.54164 * 16 14 5 18 18 C 1.37582 * 120.02705 * 179.72271 * 17 16 14 19 19 C 1.39797 * 120.06782 * 0.55549 * 18 17 16 20 20 C 1.43206 * 119.97061 * 179.70281 * 19 18 17 21 21 N 6.80562 * 112.54106 * 135.24934 * 2 1 3 22 22 C 1.39580 * 120.05195 * 359.72150 * 19 18 17 23 23 C 1.38049 * 119.96595 * 0.02562 * 22 19 18 24 24 F 1.35105 * 120.03609 * 179.97438 * 23 22 19 25 25 H 1.08999 * 109.46956 * 300.00205 * 1 2 3 26 26 H 1.08997 * 109.47048 * 59.99520 * 1 2 3 27 27 H 1.08993 * 109.47517 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46908 * 60.00193 * 3 2 1 29 29 H 1.09000 * 109.47512 * 299.99969 * 3 2 1 30 30 H 1.08997 * 109.47018 * 304.99697 * 4 3 2 31 31 H 1.09000 * 109.46796 * 185.00380 * 4 3 2 32 32 H 0.96993 * 120.00308 * 185.03913 * 9 8 6 33 33 H 1.07998 * 119.98431 * 0.02562 * 17 16 14 34 34 H 1.07990 * 119.96331 * 180.25833 * 18 17 16 35 35 H 1.07994 * 120.01831 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1470 1.3299 -2.3713 7 1 3.3796 2.0290 -2.6692 8 6 5.3060 1.2042 -3.1302 9 7 6.3911 0.6960 -2.5926 10 14 5.3190 1.7582 -4.9141 11 1 3.9813 2.2913 -5.2766 12 1 6.3405 2.8207 -5.0950 13 1 5.6458 0.6034 -5.7886 14 6 4.2148 -0.7618 -1.2983 15 8 4.4622 -1.2975 -2.3616 16 6 4.1751 -1.5635 -0.0596 17 6 5.0086 -1.2344 1.0136 18 6 4.9676 -1.9781 2.1704 19 6 4.1013 -3.0706 2.2704 20 6 4.0649 -3.8471 3.4731 21 7 4.0379 -4.4640 4.4253 22 6 3.2720 -3.4055 1.1987 23 6 3.3078 -2.6574 0.0391 24 9 2.5061 -2.9806 -0.9992 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1764 0.0903 32 1 7.2188 0.6754 -3.0978 33 1 5.6813 -0.3931 0.9362 34 1 5.6089 -1.7204 3.0002 35 1 2.6026 -4.2494 1.2767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336521693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:12 Heat of formation + Delta-G solvation = -71.959850 kcal Electronic energy + Delta-G solvation = -23703.800504 eV Core-core repulsion = 20002.804819 eV Total energy + Delta-G solvation = -3700.995684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83055 -40.95668 -39.52118 -38.51421 -37.40232 -36.12775 -34.12537 -32.48247 -31.66625 -30.38321 -27.40298 -27.06457 -25.42777 -23.80895 -23.46581 -21.53131 -20.29786 -19.02117 -17.99269 -17.61227 -17.22511 -17.02484 -16.89708 -16.58908 -16.42339 -15.90822 -15.78304 -15.36419 -14.99313 -14.96275 -14.67358 -14.51579 -14.22437 -13.69792 -13.51152 -13.36634 -13.16195 -13.08740 -12.91820 -12.80397 -12.61468 -12.49737 -12.30834 -12.09831 -11.84906 -10.77370 -10.45926 -10.35896 -9.98349 -9.72233 -9.15814 -8.29019 -6.02008 -0.51544 0.16661 1.36389 1.47161 1.53212 1.55645 1.69696 2.25619 2.40786 2.62819 2.74657 3.01672 3.04159 3.29676 3.37320 3.79132 3.92665 4.01653 4.20605 4.35135 4.40601 4.55716 4.56409 4.63820 4.65763 4.82937 4.89867 4.94901 5.01598 5.08292 5.12595 5.25679 5.49972 5.67836 6.20455 6.37564 6.40498 6.99250 7.14856 7.59106 8.25561 8.81024 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.005890 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.782784 B = 4752.999229 C = 5343.662888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.407 6.407 3 C 0.051 3.949 4 C 0.092 3.908 5 N -0.445 5.445 6 C -0.363 4.363 7 H 0.078 0.922 8 C 0.033 3.967 9 N -0.872 5.872 10 Si 0.965 3.035 11 H -0.260 1.260 12 H -0.266 1.266 13 H -0.298 1.298 14 C 0.520 3.480 15 O -0.600 6.600 16 C -0.106 4.106 17 C -0.074 4.074 18 C -0.057 4.057 19 C 0.004 3.996 20 C 0.290 3.710 21 N -0.445 5.445 22 C -0.094 4.094 23 C 0.119 3.881 24 F -0.142 7.142 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.266 0.734 33 H 0.147 0.853 34 H 0.179 0.821 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 0.010 11.396 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C -0.026 4.026 4 C -0.031 4.031 5 N -0.164 5.164 6 C -0.490 4.490 7 H 0.095 0.905 8 C -0.175 4.175 9 N -0.506 5.506 10 Si 0.790 3.210 11 H -0.184 1.184 12 H -0.191 1.191 13 H -0.225 1.225 14 C 0.309 3.691 15 O -0.484 6.484 16 C -0.111 4.111 17 C -0.092 4.092 18 C -0.077 4.077 19 C 0.000 4.000 20 C -0.025 4.025 21 N -0.121 5.121 22 C -0.115 4.115 23 C 0.099 3.901 24 F -0.121 7.121 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.197 0.803 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.333 -1.434 12.251 13.866 hybrid contribution -0.179 0.661 -2.060 2.171 sum -6.512 -0.773 10.191 12.119 Atomic orbital electron populations 1.22797 0.80415 1.02961 1.00351 1.87920 1.20694 1.28523 1.95452 1.22997 0.94225 0.84736 1.00643 1.22040 0.92845 1.00276 0.87931 1.43148 1.59790 1.04098 1.09381 1.19181 1.02716 1.22536 1.04560 0.90453 1.26048 0.94236 0.94780 1.02390 1.69812 1.00068 1.42544 1.38216 0.85342 0.78923 0.77156 0.79535 1.18423 1.19134 1.22466 1.18321 0.80464 0.82843 0.87453 1.90592 1.53162 1.71758 1.32871 1.20568 0.98100 0.96071 0.96348 1.21173 0.97072 1.00300 0.90705 1.21348 0.96652 0.91727 0.98023 1.15572 1.00395 0.96072 0.87932 1.25218 0.92700 0.92463 0.92158 1.81237 1.09102 1.09937 1.11782 1.21039 1.00253 1.00371 0.89815 1.17501 0.91803 0.95279 0.85557 1.91493 1.71375 1.91855 1.57332 0.92072 0.94892 0.89622 0.89691 0.94652 0.89076 0.88775 0.92469 0.83521 0.80331 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -13.45 10.15 -148.98 -1.51 -14.97 16 3 C 0.05 1.58 6.24 71.98 0.45 2.03 16 4 C 0.09 3.26 5.66 86.38 0.49 3.75 16 5 N -0.44 -21.42 2.42 -639.10 -1.55 -22.97 16 6 C -0.36 -19.42 9.03 84.13 0.76 -18.66 16 7 H 0.08 4.01 7.92 -2.91 -0.02 3.99 16 8 C 0.03 1.80 4.34 84.98 0.37 2.16 16 9 N -0.87 -50.11 12.49 21.69 0.27 -49.84 16 10 Si 0.97 44.62 29.61 68.60 2.03 46.65 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 14 C 0.52 26.53 5.77 86.72 0.50 27.03 16 15 O -0.60 -37.20 15.55 -4.04 -0.06 -37.26 16 16 C -0.11 -4.11 4.49 -20.01 -0.09 -4.20 16 17 C -0.07 -2.17 7.52 22.49 0.17 -2.00 16 18 C -0.06 -1.19 9.73 22.49 0.22 -0.97 16 19 C 0.00 0.09 5.73 -21.33 -0.12 -0.04 16 20 C 0.29 6.27 15.31 88.35 1.35 7.62 16 21 N -0.45 -11.32 18.53 18.99 0.35 -10.96 16 22 C -0.09 -2.33 9.71 22.55 0.22 -2.11 16 23 C 0.12 4.16 7.27 22.64 0.16 4.33 16 24 F -0.14 -5.80 16.72 44.97 0.75 -5.04 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 2.82 4.69 -2.39 -0.01 2.81 16 31 H 0.09 3.12 8.09 -2.39 -0.02 3.10 16 32 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.15 4.37 7.83 -2.91 -0.02 4.35 16 34 H 0.18 2.32 8.06 -2.92 -0.02 2.30 16 35 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -75.29 322.28 7.14 -68.15 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.13 Total: 5.29 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 5.73 Total: 20.96 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -0.93 Total: -83.77 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.57 Total: -52.23 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.75 Total: -5.04 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -75.29 7.14 -68.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336521693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.813 kcal (2) G-P(sol) polarization free energy of solvation -75.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds