Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47342 * 2 1 4 4 C 1.50703 * 109.47118 * 119.99746 * 2 1 3 5 5 H 1.07998 * 119.99722 * 119.99878 * 4 2 1 6 6 C 1.37873 * 119.99988 * 300.00396 * 4 2 1 7 7 N 1.31515 * 120.00592 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99948 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47093 * 59.99360 * 8 6 4 10 10 H 1.48499 * 109.47417 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.46958 * 299.99546 * 8 6 4 12 12 N 1.46498 * 109.47339 * 240.00179 * 2 1 3 13 13 C 1.34770 * 120.00134 * 85.00007 * 12 2 1 14 14 O 1.21592 * 120.00280 * 0.02562 * 13 12 2 15 15 N 1.34774 * 120.00026 * 180.02562 * 13 12 2 16 16 C 1.40179 * 120.00067 * 185.63584 * 15 13 12 17 17 C 1.38779 * 120.02956 * 24.77905 * 16 15 13 18 18 C 1.38170 * 120.03124 * 179.97438 * 17 16 15 19 19 C 1.38214 * 120.17385 * 0.05386 * 18 17 16 20 20 C 1.38810 * 120.19282 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.86429 * 359.88519 * 20 19 18 22 22 O 1.36190 * 120.81969 * 180.24671 * 21 20 19 23 23 C 1.43177 * 116.68661 * 342.62992 * 22 21 20 24 24 C 1.53467 * 108.21876 * 46.23360 * 23 22 21 25 25 O 1.36124 * 119.36518 * 179.64055 * 20 19 18 26 26 H 1.08989 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46885 * 300.00572 * 1 2 3 28 28 H 1.09004 * 109.46568 * 59.99786 * 1 2 3 29 29 H 0.96996 * 120.00744 * 179.97438 * 7 6 4 30 30 H 0.96996 * 119.99642 * 265.00053 * 12 2 1 31 31 H 0.97003 * 120.00314 * 5.63989 * 15 13 12 32 32 H 1.07998 * 119.97914 * 0.23855 * 17 16 15 33 33 H 1.07997 * 119.91232 * 180.02562 * 18 17 16 34 34 H 1.07993 * 119.90671 * 180.02562 * 19 18 17 35 35 H 1.09004 * 109.70995 * 165.91639 * 23 22 21 36 36 H 1.09003 * 109.71704 * 286.54740 * 23 22 21 37 37 H 1.08997 * 109.71002 * 60.00097 * 24 23 22 38 38 H 1.08996 * 109.70973 * 180.57832 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6035 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1209 4.0082 10 1 1.8259 -0.4206 5.2205 11 1 1.8257 -2.5202 4.0078 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8584 1.1617 -2.4116 15 7 2.5959 -0.6537 -3.4576 16 6 2.8423 0.0694 -4.6330 17 6 3.1304 1.4254 -4.5667 18 6 3.3738 2.1380 -5.7252 19 6 3.3303 1.5043 -6.9527 20 6 3.0423 0.1485 -7.0286 21 6 2.7999 -0.5726 -5.8678 22 8 2.5205 -1.9045 -5.9192 23 6 2.1149 -2.4278 -7.1887 24 6 3.0724 -1.8865 -8.2589 25 8 2.9965 -0.4569 -8.2469 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 0.7088 1.1614 3.4844 30 1 2.2491 -1.6317 -1.1526 31 1 2.7484 -1.6114 -3.4365 32 1 3.1686 1.9228 -3.6089 33 1 3.5983 3.1930 -5.6713 34 1 3.5216 2.0654 -7.8554 35 1 2.1624 -3.5167 -7.1697 36 1 1.0968 -2.1076 -7.4102 37 1 4.0911 -2.2021 -8.0343 38 1 2.7788 -2.2626 -9.2389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157576708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = -90.991054 kcal Electronic energy + Delta-G solvation = -23146.447827 eV Core-core repulsion = 19568.087193 eV Total energy + Delta-G solvation = -3578.360634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38033 -41.20568 -38.72076 -38.25501 -36.80879 -35.52015 -34.31511 -32.10869 -31.31372 -29.67397 -29.36060 -27.33373 -25.73680 -24.46505 -22.75613 -22.23553 -21.45680 -19.91183 -19.69033 -18.86731 -18.30100 -17.66232 -17.24505 -16.67238 -16.48518 -16.13928 -16.08297 -15.59819 -15.50780 -15.27579 -15.18741 -14.66071 -14.38999 -14.14158 -13.77502 -13.14219 -12.99253 -12.93279 -12.84588 -12.74308 -12.45991 -12.25885 -12.13654 -11.99417 -11.67455 -11.25771 -11.10818 -10.95194 -10.59685 -9.84761 -9.12244 -8.83720 -8.16959 -6.34481 0.23260 0.31735 1.45841 1.48472 1.55691 1.65481 2.04179 2.16252 2.27819 2.42640 2.80031 3.13438 3.29708 3.45584 3.78157 3.96712 4.00156 4.23236 4.30061 4.41189 4.49787 4.63982 4.71624 4.74871 4.93043 5.02120 5.04292 5.09211 5.36403 5.42061 5.52647 5.60608 5.63752 5.76943 5.81183 5.92757 6.08668 6.22636 6.41708 6.72448 7.17404 7.33771 7.62540 8.89456 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030769 B = 0.003368 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.796065 B = 8310.638015 C = 8790.914127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.713 5.713 13 C 0.694 3.306 14 O -0.617 6.617 15 N -0.669 5.669 16 C 0.167 3.833 17 C -0.156 4.156 18 C -0.087 4.087 19 C -0.139 4.139 20 C 0.066 3.934 21 C 0.005 3.995 22 O -0.323 6.323 23 C 0.015 3.985 24 C 0.016 3.984 25 O -0.315 6.315 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.010 0.990 29 H 0.266 0.734 30 H 0.403 0.597 31 H 0.419 0.581 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.196 -7.810 -21.726 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.365 5.365 13 C 0.395 3.605 14 O -0.498 6.498 15 N -0.316 5.316 16 C 0.070 3.930 17 C -0.177 4.177 18 C -0.105 4.105 19 C -0.158 4.158 20 C 0.020 3.980 21 C -0.042 4.042 22 O -0.239 6.239 23 C -0.060 4.060 24 C -0.059 4.059 25 O -0.230 6.230 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.238 0.762 31 H 0.257 0.743 32 H 0.148 0.852 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.821 -6.738 -21.546 23.084 hybrid contribution 0.117 -1.104 1.044 1.524 sum 4.938 -7.842 -20.503 22.500 Atomic orbital electron populations 1.21930 0.98396 0.99421 0.99595 1.18291 0.90904 0.91828 0.80460 0.97881 1.21492 1.32815 1.13715 0.90651 0.90826 1.25787 0.94826 0.95577 1.02252 1.70041 1.36839 1.23835 1.24764 0.85369 0.78620 0.78667 0.77490 1.19594 1.21139 1.18887 1.45486 1.68760 1.14044 1.08198 1.16185 0.78349 0.85046 0.80957 1.90818 1.58135 1.16084 1.84789 1.42373 1.68528 1.12003 1.08721 1.17060 1.01050 0.91718 0.83137 1.21331 1.02789 0.92594 1.01013 1.21067 0.98289 1.01064 0.90100 1.20677 1.04261 0.91447 0.99441 1.18719 1.02245 0.93573 0.83492 1.18349 1.08563 0.85388 0.91947 1.86208 1.83875 1.18696 1.35083 1.23959 0.98295 1.02366 0.81349 1.23956 1.00934 0.77658 1.03315 1.86289 1.89366 1.22692 1.24641 0.94174 0.91211 0.97065 0.92454 0.76233 0.74338 0.85246 0.82438 0.82358 0.82777 0.90803 0.89914 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.94 9.26 71.98 0.67 -6.28 16 2 C 0.29 15.18 2.56 44.25 0.11 15.29 16 3 H 0.00 0.20 7.58 -2.38 -0.02 0.18 16 4 C -0.55 -29.12 8.73 25.60 0.22 -28.90 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -52.59 11.32 21.45 0.24 -52.35 16 8 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.71 -30.63 5.07 -461.41 -2.34 -32.97 16 13 C 0.69 29.82 8.33 179.06 1.49 31.31 16 14 O -0.62 -31.35 13.17 -4.00 -0.05 -31.41 16 15 N -0.67 -22.89 5.29 -316.78 -1.67 -24.57 16 16 C 0.17 5.61 6.45 38.17 0.25 5.86 16 17 C -0.16 -5.35 8.71 22.38 0.19 -5.15 16 18 C -0.09 -2.28 10.03 22.25 0.22 -2.05 16 19 C -0.14 -3.29 9.96 22.40 0.22 -3.06 16 20 C 0.07 1.68 6.49 22.54 0.15 1.82 16 21 C 0.01 0.15 6.51 22.64 0.15 0.29 16 22 O -0.32 -7.76 9.78 -83.44 -0.82 -8.58 16 23 C 0.01 0.21 7.26 72.14 0.52 0.74 16 24 C 0.02 0.20 7.26 72.14 0.52 0.72 16 25 O -0.32 -6.61 10.42 -82.68 -0.86 -7.47 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 28 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.40 14.51 8.56 -92.71 -0.79 13.72 16 31 H 0.42 11.79 8.32 -92.71 -0.77 11.02 16 32 H 0.13 5.23 5.79 -2.91 -0.02 5.22 16 33 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.15 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.43 320.09 1.25 -70.18 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.45 Total: 31.34 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.17 Total: 11.90 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -3.77 Total: -109.88 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.73 Total: -47.46 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -71.43 1.25 -70.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157576708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.808 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds