Wall clock time and date at job start Tue Mar 31 2020 07:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39651 * 120.15181 * 237.79620 * 3 2 1 5 5 C 1.37918 * 119.84702 * 180.25615 * 4 3 2 6 6 C 1.38383 * 120.15371 * 359.74900 * 5 4 3 7 7 C 1.38339 * 120.30256 * 359.97438 * 6 5 4 8 8 C 1.37967 * 120.15378 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.08283 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47150 * 259.99875 * 9 8 7 11 11 C 1.36933 * 120.00053 * 269.99385 * 10 9 8 12 12 H 1.07995 * 120.00180 * 133.92327 * 11 10 9 13 13 C 1.38813 * 120.00121 * 313.92311 * 11 10 9 14 14 N 1.31623 * 120.00209 * 171.56956 * 13 11 10 15 15 Si 1.86808 * 119.99936 * 351.57386 * 13 11 10 16 16 H 1.48501 * 109.46761 * 95.05427 * 15 13 11 17 17 H 1.48497 * 109.47270 * 215.05341 * 15 13 11 18 18 H 1.48496 * 109.46954 * 335.05320 * 15 13 11 19 19 C 1.46501 * 120.00164 * 89.99627 * 10 9 8 20 20 C 1.50692 * 109.47217 * 264.01450 * 19 10 9 21 21 C 1.38230 * 120.00141 * 94.66498 * 20 19 10 22 22 C 1.38244 * 120.00146 * 179.97438 * 21 20 19 23 23 C 1.38233 * 119.99695 * 0.08797 * 22 21 20 24 24 C 1.38228 * 120.00376 * 359.86799 * 23 22 21 25 25 C 1.38238 * 119.99949 * 0.08799 * 24 23 22 26 26 H 1.08005 * 120.07623 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.92709 * 179.76862 * 5 4 3 28 28 H 1.07998 * 119.84890 * 180.02562 * 6 5 4 29 29 H 1.08002 * 119.92700 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47274 * 139.99007 * 9 8 7 31 31 H 1.09004 * 109.46965 * 19.99860 * 9 8 7 32 32 H 0.97005 * 119.99849 * 180.02562 * 14 13 11 33 33 H 1.09008 * 109.46965 * 144.01235 * 19 10 9 34 34 H 1.09004 * 109.47296 * 24.01998 * 19 10 9 35 35 H 1.07995 * 120.00015 * 359.69785 * 21 20 19 36 36 H 1.08001 * 119.99916 * 179.97438 * 22 21 20 37 37 H 1.08000 * 119.99569 * 179.97438 * 23 22 21 38 38 H 1.08005 * 120.00426 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.00468 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.6445 1.0218 5 6 4.6484 0.6457 1.0127 6 6 5.3374 0.0065 -0.0029 7 6 4.6492 -0.6382 -1.0151 8 6 3.2696 -0.6481 -1.0179 9 6 2.5215 -1.3514 -2.1210 10 7 2.0640 -0.3674 -3.1052 11 6 0.8374 0.2244 -2.9625 12 1 0.7355 1.2924 -3.0855 13 6 -0.2751 -0.5486 -2.6598 14 7 -1.4178 0.0316 -2.3595 15 14 -0.1506 -2.4125 -2.6785 16 1 0.1228 -2.9040 -1.3041 17 1 -1.4296 -2.9892 -3.1651 18 1 0.9539 -2.8257 -3.5810 19 6 2.9188 -0.0164 -4.2420 20 6 3.6964 1.2333 -3.9189 21 6 4.9750 1.1375 -3.4023 22 6 5.6886 2.2840 -3.1064 23 6 5.1228 3.5261 -3.3254 24 6 3.8446 3.6218 -3.8428 25 6 3.1313 2.4754 -4.1396 26 1 2.7327 1.1442 1.8148 27 1 5.1919 1.1465 1.8003 28 1 6.4174 0.0102 -0.0049 29 1 5.1931 -1.1355 -1.8046 30 1 1.6612 -1.8729 -1.7015 31 1 3.1812 -2.0708 -2.6061 32 1 -2.1951 -0.5086 -2.1476 33 1 2.2995 0.1583 -5.1219 34 1 3.6115 -0.8340 -4.4419 35 1 5.4148 0.1671 -3.2257 36 1 6.6874 2.2092 -2.7024 37 1 5.6801 4.4217 -3.0938 38 1 3.4026 4.5923 -4.0143 39 1 2.1325 2.5502 -4.5434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054393886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:19 Heat of formation + Delta-G solvation = 115.646984 kcal Electronic energy + Delta-G solvation = -23480.429956 eV Core-core repulsion = 20354.171833 eV Total energy + Delta-G solvation = -3126.258122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.32043 -38.50736 -35.92177 -35.10063 -32.00214 -31.80342 -30.84450 -30.26556 -29.95760 -26.16049 -25.67657 -23.08222 -22.36605 -21.99097 -20.98620 -20.23176 -18.16482 -16.87466 -16.19222 -15.76327 -15.32668 -14.89220 -14.69686 -14.45772 -14.00364 -13.89508 -13.39446 -13.03656 -12.88205 -12.65916 -12.51206 -12.26346 -12.10128 -12.03617 -11.78965 -11.52614 -11.22213 -11.14478 -11.01130 -10.78731 -10.55481 -10.42951 -10.17917 -9.90734 -9.70270 -8.60094 -8.55094 -8.32240 -8.27404 -8.01010 -6.79658 -5.97851 -3.55659 1.42297 1.73253 1.94342 1.95114 3.26524 3.39148 3.42705 3.77967 3.96187 4.30409 4.46338 4.66682 4.92855 5.15184 5.22464 5.28392 5.34928 5.35494 5.36721 5.41382 5.51242 5.63674 5.68355 5.89632 5.94511 5.99916 6.05909 6.19047 6.25876 6.30265 6.45179 6.51071 6.57672 6.64665 6.72541 6.79926 6.95771 7.01521 7.05195 7.28062 7.30043 7.55664 8.06574 8.41325 8.76897 8.91090 9.64998 10.04857 11.13611 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.008387 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.235951 B = 3337.748906 C = 4236.251981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C 0.216 3.784 3 C 0.009 3.991 4 C -0.085 4.085 5 C -0.136 4.136 6 C -0.104 4.104 7 C -0.116 4.116 8 C -0.044 4.044 9 C 0.159 3.841 10 N -0.583 5.583 11 C -0.286 4.286 12 H 0.076 0.924 13 C 0.058 3.942 14 N -0.866 5.866 15 Si 0.877 3.123 16 H -0.286 1.286 17 H -0.301 1.301 18 H -0.266 1.266 19 C 0.182 3.818 20 C -0.080 4.080 21 C -0.111 4.111 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.096 4.096 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.265 0.735 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.978 0.958 1.476 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.035 5.035 2 C -0.100 4.100 3 C 0.005 3.995 4 C -0.105 4.105 5 C -0.154 4.154 6 C -0.123 4.123 7 C -0.135 4.135 8 C -0.050 4.050 9 C 0.034 3.966 10 N -0.303 5.303 11 C -0.414 4.414 12 H 0.093 0.907 13 C -0.147 4.147 14 N -0.503 5.503 15 Si 0.708 3.292 16 H -0.213 1.213 17 H -0.229 1.229 18 H -0.191 1.191 19 C 0.057 3.943 20 C -0.083 4.083 21 C -0.129 4.129 22 C -0.144 4.144 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.115 4.115 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.930 0.913 1.464 14.036 hybrid contribution 0.435 -0.700 0.220 0.853 sum 14.365 0.213 1.684 14.465 Atomic orbital electron populations 1.81275 1.11320 1.05249 1.05657 1.25346 0.92525 0.96123 0.96008 1.15877 0.85368 1.01719 0.96585 1.21074 0.94262 0.97909 0.97266 1.20824 0.93590 1.01531 0.99485 1.21101 0.99309 0.97326 0.94570 1.20848 0.93173 1.00854 0.98605 1.21015 0.93681 0.96574 0.93717 1.20459 0.96024 0.91607 0.88524 1.44035 1.16258 1.48917 1.21094 1.18573 0.81540 0.92480 1.48832 0.90663 1.25510 0.95011 0.97143 0.97041 1.69689 1.01029 1.35342 1.44206 0.86927 0.76667 0.87966 0.77653 1.21336 1.22913 1.19129 1.19969 0.92241 0.91317 0.90810 1.20905 0.93813 0.96995 0.96546 1.21011 0.94698 0.97807 0.99409 1.20934 0.99415 0.92833 1.01207 1.20930 0.95907 0.97096 1.01412 1.21068 0.94940 0.98202 1.00311 1.21098 0.99243 0.91968 0.99176 0.86076 0.86259 0.86532 0.86237 0.92474 0.92594 0.92486 0.91639 0.93342 0.86888 0.87240 0.87323 0.87111 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -9.41 15.51 41.84 0.65 -8.76 16 2 C 0.22 5.03 11.93 -22.47 -0.27 4.76 16 3 C 0.01 0.17 5.73 -106.93 -0.61 -0.44 16 4 C -0.08 -1.33 9.76 -39.17 -0.38 -1.71 16 5 C -0.14 -1.77 10.03 -39.65 -0.40 -2.17 16 6 C -0.10 -1.31 10.04 -39.49 -0.40 -1.71 16 7 C -0.12 -1.67 7.39 -39.64 -0.29 -1.97 16 8 C -0.04 -0.80 5.50 -104.21 -0.57 -1.37 16 9 C 0.16 3.24 3.98 -5.20 -0.02 3.22 16 10 N -0.58 -12.86 1.99 -175.99 -0.35 -13.21 16 11 C -0.29 -7.53 8.34 -15.06 -0.13 -7.66 16 12 H 0.08 2.23 7.86 -52.49 -0.41 1.82 16 13 C 0.06 1.62 3.16 -17.43 -0.06 1.56 16 14 N -0.87 -25.99 12.98 55.49 0.72 -25.27 16 15 Si 0.88 22.26 24.62 -169.99 -4.18 18.08 16 16 H -0.29 -7.30 6.90 56.52 0.39 -6.91 16 17 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 18 H -0.27 -6.35 6.83 56.52 0.39 -5.97 16 19 C 0.18 3.39 5.85 -5.20 -0.03 3.36 16 20 C -0.08 -1.40 5.42 -104.63 -0.57 -1.96 16 21 C -0.11 -1.67 8.16 -39.58 -0.32 -2.00 16 22 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.14 -1.94 10.05 -39.59 -0.40 -2.33 16 24 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 25 C -0.10 -1.72 9.60 -39.58 -0.38 -2.10 16 26 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.47 6.88 -52.49 -0.36 1.11 16 30 H 0.06 1.33 2.74 -51.93 -0.14 1.19 16 31 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 32 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 33 H 0.07 1.25 8.06 -51.92 -0.42 0.83 16 34 H 0.05 0.78 7.74 -51.93 -0.40 0.38 16 35 H 0.11 1.51 6.10 -52.49 -0.32 1.19 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.12 2.26 7.98 -52.49 -0.42 1.84 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -31.20 322.69 -8.49 -39.69 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.57 Total: 1.69 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -5.62 Total: -17.08 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 1.02 Total: -47.24 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.18 Total: 18.08 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.20 -8.49 -39.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054393886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.338 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds