Wall clock time and date at job start Tue Mar 31 2020 07:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 120.00431 * 2 1 4 4 H 1.48503 * 109.46984 * 269.99966 * 3 2 1 5 5 H 1.48496 * 109.46673 * 29.99553 * 3 2 1 6 6 H 1.48496 * 109.47107 * 149.99930 * 3 2 1 7 7 C 1.38955 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99557 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00392 * 180.02562 * 7 2 1 10 10 C 1.34778 * 120.00297 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99793 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99910 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46694 * 179.97438 * 12 10 9 14 14 C 1.48528 * 111.00568 * 307.40151 * 13 12 10 15 15 C 1.55094 * 103.28538 * 200.33296 * 14 13 12 16 16 C 1.54591 * 102.84677 * 37.30576 * 15 14 13 17 17 H 1.09002 * 110.31140 * 97.11529 * 16 15 14 18 18 C 1.50702 * 110.31055 * 219.18337 * 16 15 14 19 19 C 1.38269 * 119.98589 * 57.44296 * 18 16 15 20 20 C 1.38223 * 120.05333 * 180.27465 * 19 18 16 21 21 C 1.38224 * 120.02199 * 359.76975 * 20 19 18 22 22 C 1.38437 * 119.97527 * 359.97438 * 21 20 19 23 23 F 1.35095 * 120.02529 * 180.02562 * 22 21 20 24 24 C 1.38172 * 119.98969 * 237.20483 * 18 16 15 25 25 C 1.47900 * 110.99615 * 189.99930 * 13 12 10 26 26 H 0.97000 * 119.99819 * 0.02562 * 1 2 3 27 27 H 0.97006 * 119.99850 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.46540 * 60.00449 * 12 10 9 29 29 H 1.08996 * 109.47564 * 300.00196 * 12 10 9 30 30 H 1.09007 * 110.66687 * 318.71297 * 14 13 12 31 31 H 1.09003 * 110.66808 * 81.84345 * 14 13 12 32 32 H 1.09000 * 110.71188 * 278.99146 * 15 14 13 33 33 H 1.09007 * 110.80940 * 155.65858 * 15 14 13 34 34 H 1.08004 * 119.97350 * 0.02562 * 19 18 16 35 35 H 1.07994 * 119.98872 * 179.74471 * 20 19 18 36 36 H 1.08003 * 120.00681 * 179.97438 * 21 20 19 37 37 H 1.08002 * 120.01574 * 359.97438 * 24 18 16 38 38 H 1.08998 * 109.91770 * 26.50263 * 25 13 12 39 39 H 1.08998 * 110.08796 * 265.28958 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6526 0.6999 6 1 3.5457 1.4400 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0001 12 6 5.5607 -2.3708 0.0011 13 7 6.0502 -3.7558 0.0017 14 6 5.4336 -4.5379 1.1035 15 6 6.4093 -5.7299 1.2839 16 6 7.7927 -5.0796 1.0534 17 1 8.2555 -4.8265 2.0073 18 6 8.6840 -6.0094 0.2711 19 6 8.2848 -6.4670 -0.9711 20 6 9.0987 -7.3243 -1.6874 21 6 10.3150 -7.7215 -1.1645 22 6 10.7181 -7.2599 0.0768 23 9 11.9069 -7.6470 0.5886 24 6 9.9021 -6.4005 0.7932 25 6 7.5089 -3.8022 0.2415 26 1 -0.4850 0.8401 -0.0004 27 1 3.8649 -0.3634 0.0007 28 1 5.9239 -1.8570 0.8911 29 1 5.9241 -1.8569 -0.8888 30 1 5.3821 -3.9432 2.0156 31 1 4.4430 -4.8912 0.8170 32 1 6.2169 -6.5018 0.5387 33 1 6.3386 -6.1392 2.2918 34 1 7.3344 -6.1573 -1.3803 35 1 8.7840 -7.6843 -2.6557 36 1 10.9505 -8.3918 -1.7242 37 1 10.2157 -6.0396 1.7616 38 1 7.8200 -2.9249 0.8087 39 1 8.0433 -3.8392 -0.7078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066539459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:27 Heat of formation + Delta-G solvation = -64.005318 kcal Electronic energy + Delta-G solvation = -22502.106410 eV Core-core repulsion = 18937.288754 eV Total energy + Delta-G solvation = -3564.817656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.87009 -41.12753 -40.17338 -38.61210 -36.01525 -34.17689 -33.73250 -31.76342 -31.10587 -29.31696 -28.20221 -25.88234 -23.77314 -23.60738 -22.35725 -21.30068 -21.01805 -20.16330 -18.27054 -17.79527 -17.42123 -17.03490 -16.85998 -16.56930 -16.39113 -16.35744 -15.91171 -15.23688 -14.94361 -14.71578 -14.49752 -14.29089 -14.16562 -13.86751 -13.73268 -13.23367 -13.04502 -12.93111 -12.67428 -12.46767 -12.40797 -12.34743 -12.20427 -11.97645 -11.74803 -11.51027 -11.44902 -10.27751 -10.22161 -9.86267 -9.55671 -9.29065 -8.40992 -6.01512 0.21479 0.29132 1.30252 1.35771 1.44404 1.95186 2.23115 2.60900 2.73367 3.14993 3.22922 3.26131 3.59369 3.75552 3.87863 4.00049 4.15233 4.18073 4.30587 4.31661 4.39316 4.42294 4.45464 4.54506 4.63976 4.77121 4.94978 4.95443 5.09922 5.16846 5.20113 5.22026 5.30971 5.43997 5.53820 5.63720 5.90602 5.95926 5.99292 6.11038 6.59882 6.89239 7.39828 7.97090 8.76569 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.041522 B = 0.002790 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.181322 B =10032.915811 C =10188.075765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.232 1.232 7 C -0.326 4.326 8 H 0.056 0.944 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.603 6.603 12 C 0.043 3.957 13 N -0.512 5.512 14 C 0.037 3.963 15 C -0.109 4.109 16 C -0.054 4.054 17 H 0.103 0.897 18 C -0.044 4.044 19 C -0.125 4.125 20 C -0.090 4.090 21 C -0.160 4.160 22 C 0.078 3.922 23 F -0.150 7.150 24 C -0.154 4.154 25 C 0.044 3.956 26 H 0.279 0.721 27 H 0.389 0.611 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.064 0.936 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.686 -8.231 0.616 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.455 4.455 8 H 0.075 0.925 9 N -0.233 5.233 10 C 0.238 3.762 11 O -0.488 6.488 12 C -0.088 4.088 13 N -0.237 5.237 14 C -0.091 4.091 15 C -0.147 4.147 16 C -0.073 4.073 17 H 0.121 0.879 18 C -0.044 4.044 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.179 4.179 22 C 0.059 3.941 23 F -0.129 7.129 24 C -0.173 4.173 25 C -0.084 4.084 26 H 0.088 0.912 27 H 0.224 0.776 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 24.002 -9.049 0.126 25.651 hybrid contribution -0.068 1.243 0.836 1.499 sum 23.934 -7.806 0.962 25.193 Atomic orbital electron populations 1.69803 1.08130 1.29211 1.50402 1.26105 0.96454 1.02697 0.96152 0.85373 0.79458 0.76817 0.79927 1.18179 1.20114 1.15499 1.18995 0.81420 0.94915 1.50183 0.92546 1.42036 1.05847 1.07563 1.67866 1.20835 0.90790 0.83393 0.81222 1.90495 1.71329 1.32142 1.54804 1.22107 0.90233 0.92147 1.04309 1.64572 1.04729 1.09841 1.44525 1.23333 0.99562 0.94738 0.91467 1.22656 0.92345 0.97035 1.02626 1.21034 0.94551 0.93225 0.98461 0.87907 1.19615 0.93487 0.96702 0.94614 1.21330 1.00671 0.97724 0.94570 1.21277 0.92751 0.96072 1.00641 1.21381 0.98792 1.02891 0.94846 1.17896 0.82497 0.99252 0.94498 1.91470 1.44350 1.89872 1.87214 1.21171 0.94635 0.99724 1.01721 1.23089 0.87766 0.97014 1.00489 0.91176 0.77550 0.90323 0.86286 0.94982 0.90682 0.90899 0.89627 0.85205 0.82978 0.83298 0.83645 0.91818 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.96 21.66 0.30 -55.88 16 2 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 3 Si 0.96 38.50 27.74 68.60 1.90 40.41 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 7 C -0.33 -18.92 10.16 84.04 0.85 -18.07 16 8 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 9 N -0.59 -27.58 5.09 -306.97 -1.56 -29.14 16 10 C 0.45 19.94 7.49 87.66 0.66 20.60 16 11 O -0.60 -32.35 13.10 -3.07 -0.04 -32.39 16 12 C 0.04 1.32 5.52 85.56 0.47 1.79 16 13 N -0.51 -14.93 5.26 -887.24 -4.67 -19.60 16 14 C 0.04 1.14 5.30 86.71 0.46 1.60 16 15 C -0.11 -2.47 6.51 31.85 0.21 -2.26 16 16 C -0.05 -0.99 3.21 -10.66 -0.03 -1.03 16 17 H 0.10 1.53 7.92 -2.39 -0.02 1.51 16 18 C -0.04 -0.79 4.72 -19.87 -0.09 -0.89 16 19 C -0.12 -2.31 8.12 22.27 0.18 -2.13 16 20 C -0.09 -1.40 10.04 22.26 0.22 -1.18 16 21 C -0.16 -2.56 10.03 22.31 0.22 -2.33 16 22 C 0.08 1.43 7.30 22.38 0.16 1.60 16 23 F -0.15 -3.02 17.27 44.97 0.78 -2.25 16 24 C -0.15 -2.66 9.66 22.31 0.22 -2.45 16 25 C 0.04 0.90 6.12 86.45 0.53 1.43 16 26 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.39 15.01 5.76 -92.70 -0.53 14.48 16 28 H 0.08 1.98 7.81 -2.39 -0.02 1.96 16 29 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 30 H 0.03 1.00 8.02 -2.38 -0.02 0.98 16 31 H 0.07 3.04 5.97 -2.39 -0.01 3.03 16 32 H 0.07 1.73 6.96 -2.39 -0.02 1.72 16 33 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.13 2.66 7.79 -2.91 -0.02 2.64 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.15 2.04 7.97 -2.91 -0.02 2.02 16 38 H 0.06 1.11 7.57 -2.39 -0.02 1.09 16 39 H 0.09 1.72 7.31 -2.39 -0.02 1.70 16 Total: -1.00 -73.07 324.00 1.72 -71.35 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.48 Total: 31.21 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.53 Total: -3.71 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -5.93 Total: -104.62 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.04 Total: -32.39 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.41 kcal Total: -73.07 1.72 -71.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066539459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.342 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds