Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35250 * 126.69862 * 2 1 4 4 C 1.42023 * 103.95865 * 179.97438 * 3 2 1 5 5 N 1.39500 * 126.89024 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00332 * 359.97438 * 5 4 3 7 7 O 1.21269 * 119.99870 * 359.72923 * 6 5 4 8 8 C 1.50704 * 119.99845 * 179.72528 * 6 5 4 9 9 N 1.46902 * 109.46660 * 180.02562 * 8 6 5 10 10 C 1.46900 * 110.99500 * 190.00517 * 9 8 6 11 11 C 1.50704 * 109.46918 * 168.42575 * 10 9 8 12 12 H 1.07996 * 119.99917 * 354.95563 * 11 10 9 13 13 C 1.37879 * 120.00024 * 174.95422 * 11 10 9 14 14 N 1.31519 * 119.99882 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99924 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46958 * 60.00435 * 15 13 11 17 17 H 1.48502 * 109.46907 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47292 * 300.00153 * 15 13 11 19 19 C 1.46898 * 110.99979 * 66.04715 * 9 8 6 20 20 C 1.52997 * 109.46926 * 61.43090 * 19 9 8 21 21 C 1.47202 * 109.46865 * 179.02955 * 20 19 9 22 22 N 8.12364 * 115.31164 * 39.25686 * 2 1 3 23 23 N 1.30715 * 106.20903 * 0.22526 * 4 3 2 24 24 O 1.20909 * 111.47750 * 359.59635 * 23 4 3 25 25 H 1.08999 * 109.47314 * 89.99999 * 1 2 3 26 26 H 1.09001 * 109.47578 * 210.00355 * 1 2 3 27 27 H 1.09005 * 109.47348 * 330.00620 * 1 2 3 28 28 H 1.08001 * 128.01600 * 359.97438 * 3 2 1 29 29 H 0.97003 * 119.99747 * 179.72694 * 5 4 3 30 30 H 1.08996 * 109.47074 * 300.00529 * 8 6 5 31 31 H 1.08999 * 109.46623 * 60.00595 * 8 6 5 32 32 H 1.09006 * 109.47023 * 288.42182 * 10 9 8 33 33 H 1.08992 * 109.47683 * 48.42630 * 10 9 8 34 34 H 0.96996 * 119.99992 * 179.97438 * 14 13 11 35 35 H 1.09008 * 109.46780 * 181.42646 * 19 9 8 36 36 H 1.08997 * 109.47550 * 301.42671 * 19 9 8 37 37 H 1.09000 * 109.47482 * 299.02817 * 20 19 9 38 38 H 1.08997 * 109.47527 * 59.03163 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6250 0.5354 0.0006 5 7 4.8286 1.2407 0.0004 6 6 4.8200 2.5885 -0.0011 7 8 3.7659 3.1881 -0.0071 8 6 6.1203 3.3503 0.0049 9 7 5.8426 4.7928 0.0026 10 6 7.0705 5.5648 -0.2301 11 6 6.7147 7.0026 -0.5084 12 1 5.6787 7.2959 -0.5928 13 6 7.7118 7.9436 -0.6552 14 7 8.9733 7.5864 -0.5519 15 14 7.2707 9.7255 -1.0008 16 1 6.4395 10.2542 0.1103 17 1 8.5138 10.5300 -1.1144 18 1 6.5085 9.8092 -2.2725 19 6 5.1901 5.2053 1.2524 20 6 6.1199 4.9165 2.4325 21 6 5.4756 5.3512 3.6826 22 7 4.9801 5.6864 4.6471 23 7 3.4764 -0.7632 -0.0040 24 8 2.3082 -1.0751 0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 2.0305 2.1262 -0.0004 29 1 5.6718 0.7611 0.0048 30 1 6.6889 3.0915 0.8980 31 1 6.6980 3.0897 -0.8819 32 1 7.7057 5.5124 0.6542 33 1 7.6037 5.1504 -1.0856 34 1 9.6747 8.2483 -0.6555 35 1 4.9729 6.2728 1.2137 36 1 4.2607 4.6498 1.3776 37 1 6.3234 3.8468 2.4816 38 1 7.0560 5.4586 2.2987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072947639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = 69.806489 kcal Electronic energy + Delta-G solvation = -22778.262858 eV Core-core repulsion = 19239.167680 eV Total energy + Delta-G solvation = -3539.095178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.92110 -40.17796 -37.58849 -36.00438 -35.38982 -33.73733 -32.74285 -32.18469 -30.61145 -28.47363 -27.94004 -25.94607 -23.95272 -23.49091 -21.70355 -20.74940 -19.87383 -17.76361 -17.66719 -17.42399 -16.85693 -16.62536 -16.20177 -15.68188 -14.95439 -14.70330 -14.31959 -13.98553 -13.78154 -13.67313 -13.59188 -13.47424 -13.24034 -12.61131 -12.40902 -12.27106 -12.13078 -11.70796 -11.64515 -11.35672 -11.32418 -11.20696 -10.87000 -10.71895 -10.31524 -10.11418 -9.72363 -9.49283 -9.34800 -8.87479 -8.54335 -7.54008 -6.14786 -4.16193 1.31948 1.97980 2.48116 2.86611 3.05129 3.06379 3.09199 3.29751 3.34003 3.37634 4.17637 4.23689 4.36719 4.63867 4.78053 4.82612 5.02641 5.11549 5.15861 5.21900 5.25121 5.38232 5.40011 5.55061 5.60794 5.63996 5.80377 5.92027 6.20388 6.35505 6.62932 6.94434 7.07301 7.09116 7.62062 7.76031 7.88639 7.95224 8.04551 8.23302 8.31340 8.91790 9.49345 10.95519 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.003574 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.953583 B = 7833.266656 C = 8324.998629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.029 4.029 3 C -0.225 4.225 4 C 0.255 3.745 5 N -0.639 5.639 6 C 0.522 3.478 7 O -0.489 6.489 8 C 0.034 3.966 9 N -0.509 5.509 10 C 0.187 3.813 11 C -0.511 4.511 12 H 0.066 0.934 13 C 0.059 3.941 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.065 3.935 20 C -0.076 4.076 21 C 0.225 3.775 22 N -0.458 5.458 23 N -0.398 5.398 24 O 0.090 5.910 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.191 0.809 29 H 0.418 0.582 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.008 0.992 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -15.435 0.536 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C -0.248 4.248 4 C 0.006 3.994 5 N -0.293 5.293 6 C 0.309 3.691 7 O -0.359 6.359 8 C -0.098 4.098 9 N -0.232 5.232 10 C 0.063 3.937 11 C -0.549 4.549 12 H 0.084 0.916 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.065 4.065 20 C -0.118 4.118 21 C -0.093 4.093 22 N -0.136 5.136 23 N -0.116 5.116 24 O 0.031 5.969 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.208 0.792 29 H 0.254 0.746 30 H 0.085 0.915 31 H 0.128 0.872 32 H 0.026 0.974 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.381 -15.266 1.540 18.525 hybrid contribution 1.010 1.148 0.025 1.529 sum -9.371 -14.118 1.565 17.017 Atomic orbital electron populations 1.20325 0.83899 1.04605 1.04128 1.24429 0.96436 0.85948 1.02496 1.22785 0.89365 1.02194 1.10455 1.20592 0.88860 0.88711 1.01278 1.42833 1.05802 1.06872 1.73788 1.21324 0.93179 0.79899 0.74732 1.90610 1.32867 1.67326 1.45126 1.22024 0.91869 0.92162 1.03698 1.62159 1.29750 0.99108 1.32165 1.19935 0.84369 0.92959 0.96458 1.21062 0.93471 0.91766 1.48618 0.91576 1.24941 0.94875 0.99145 0.95315 1.69917 0.99039 1.34640 1.50096 0.86569 0.77631 0.84261 0.79080 1.20198 1.21384 1.20073 1.22257 0.95932 1.03953 0.84402 1.20258 1.02064 1.02274 0.87182 1.29125 0.93115 0.92829 0.94206 1.81094 1.10311 1.09765 1.12431 1.74013 0.97556 1.13311 1.26700 1.84768 1.10486 1.32375 1.69249 0.89380 0.89928 0.88912 0.79183 0.74596 0.91496 0.87200 0.97405 0.94957 0.92722 0.88656 0.89998 0.88827 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 36.00 0.38 -0.05 16 2 C -0.03 -0.31 7.48 -35.37 -0.26 -0.57 16 3 C -0.23 -2.86 9.79 -39.20 -0.38 -3.25 16 4 C 0.26 3.40 8.18 -154.83 -1.27 2.13 16 5 N -0.64 -7.46 5.42 -11.44 -0.06 -7.52 16 6 C 0.52 7.10 7.51 -10.98 -0.08 7.01 16 7 O -0.49 -8.08 11.60 5.57 0.06 -8.01 16 8 C 0.03 0.45 5.23 -4.97 -0.03 0.43 16 9 N -0.51 -9.05 4.43 -237.52 -1.05 -10.10 16 10 C 0.19 4.03 4.54 -4.97 -0.02 4.00 16 11 C -0.51 -12.85 8.40 -34.44 -0.29 -13.13 16 12 H 0.07 1.69 7.42 -52.49 -0.39 1.30 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -24.37 13.29 55.43 0.74 -23.63 16 15 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.06 1.08 4.78 -3.83 -0.02 1.06 16 20 C -0.08 -1.09 5.05 -29.52 -0.15 -1.24 16 21 C 0.22 3.65 15.43 -20.79 -0.32 3.33 16 22 N -0.46 -8.41 18.53 42.11 0.78 -7.63 16 23 N -0.40 -5.34 12.10 31.19 0.38 -4.96 16 24 O 0.09 1.09 11.19 17.06 0.19 1.28 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.19 2.56 6.22 -52.49 -0.33 2.24 16 29 H 0.42 3.62 8.82 -40.82 -0.36 3.26 16 30 H 0.07 0.72 6.06 -51.93 -0.31 0.41 16 31 H 0.11 1.33 7.91 -51.93 -0.41 0.92 16 32 H 0.01 0.18 6.00 -51.93 -0.31 -0.13 16 33 H 0.03 0.74 7.90 -51.93 -0.41 0.33 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.10 1.81 7.01 -51.92 -0.36 1.45 16 36 H 0.08 1.36 5.86 -51.93 -0.30 1.05 16 37 H 0.09 1.08 6.36 -51.93 -0.33 0.75 16 38 H 0.12 1.93 6.26 -51.93 -0.32 1.60 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -31.39 328.24 -5.83 -37.22 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -4.25 Total: 1.68 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -2.54 Total: 1.17 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.78 Total: -53.84 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.26 Total: -6.73 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.39 -5.83 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072947639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.025 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds