Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35250 * 126.69862 * 2 1 4 4 C 1.42023 * 103.95865 * 179.97438 * 3 2 1 5 5 N 1.39500 * 126.89024 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00332 * 359.97438 * 5 4 3 7 7 O 1.21269 * 119.99870 * 359.72923 * 6 5 4 8 8 C 1.50704 * 119.99845 * 179.72528 * 6 5 4 9 9 N 1.46902 * 109.46660 * 180.02562 * 8 6 5 10 10 C 1.46900 * 110.99500 * 190.00517 * 9 8 6 11 11 C 1.50704 * 109.46918 * 168.42575 * 10 9 8 12 12 H 1.07996 * 119.99917 * 354.95563 * 11 10 9 13 13 C 1.37879 * 120.00024 * 174.95422 * 11 10 9 14 14 N 1.31519 * 119.99882 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99924 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46958 * 60.00435 * 15 13 11 17 17 H 1.48502 * 109.46907 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47292 * 300.00153 * 15 13 11 19 19 C 1.46898 * 110.99979 * 66.04715 * 9 8 6 20 20 C 1.52997 * 109.46926 * 61.43090 * 19 9 8 21 21 C 1.47202 * 109.46865 * 179.02955 * 20 19 9 22 22 N 8.12364 * 115.31164 * 39.25686 * 2 1 3 23 23 N 1.30715 * 106.20903 * 0.22526 * 4 3 2 24 24 O 1.20909 * 111.47750 * 359.59635 * 23 4 3 25 25 H 1.08999 * 109.47314 * 89.99999 * 1 2 3 26 26 H 1.09001 * 109.47578 * 210.00355 * 1 2 3 27 27 H 1.09005 * 109.47348 * 330.00620 * 1 2 3 28 28 H 1.08001 * 128.01600 * 359.97438 * 3 2 1 29 29 H 0.97003 * 119.99747 * 179.72694 * 5 4 3 30 30 H 1.08996 * 109.47074 * 300.00529 * 8 6 5 31 31 H 1.08999 * 109.46623 * 60.00595 * 8 6 5 32 32 H 1.09006 * 109.47023 * 288.42182 * 10 9 8 33 33 H 1.08992 * 109.47683 * 48.42630 * 10 9 8 34 34 H 0.96996 * 119.99992 * 179.97438 * 14 13 11 35 35 H 1.09008 * 109.46780 * 181.42646 * 19 9 8 36 36 H 1.08997 * 109.47550 * 301.42671 * 19 9 8 37 37 H 1.09000 * 109.47482 * 299.02817 * 20 19 9 38 38 H 1.08997 * 109.47527 * 59.03163 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0844 0.0000 4 6 3.6250 0.5354 0.0006 5 7 4.8286 1.2407 0.0004 6 6 4.8200 2.5885 -0.0011 7 8 3.7659 3.1881 -0.0071 8 6 6.1203 3.3503 0.0049 9 7 5.8426 4.7928 0.0026 10 6 7.0705 5.5648 -0.2301 11 6 6.7147 7.0026 -0.5084 12 1 5.6787 7.2959 -0.5928 13 6 7.7118 7.9436 -0.6552 14 7 8.9733 7.5864 -0.5519 15 14 7.2707 9.7255 -1.0008 16 1 6.4395 10.2542 0.1103 17 1 8.5138 10.5300 -1.1144 18 1 6.5085 9.8092 -2.2725 19 6 5.1901 5.2053 1.2524 20 6 6.1199 4.9165 2.4325 21 6 5.4756 5.3512 3.6826 22 7 4.9801 5.6864 4.6471 23 7 3.4764 -0.7632 -0.0040 24 8 2.3082 -1.0751 0.0007 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 2.0305 2.1262 -0.0004 29 1 5.6718 0.7611 0.0048 30 1 6.6889 3.0915 0.8980 31 1 6.6980 3.0897 -0.8819 32 1 7.7057 5.5124 0.6542 33 1 7.6037 5.1504 -1.0856 34 1 9.6747 8.2483 -0.6555 35 1 4.9729 6.2728 1.2137 36 1 4.2607 4.6498 1.3776 37 1 6.3234 3.8468 2.4816 38 1 7.0560 5.4586 2.2987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072947639.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = 48.852074 kcal Electronic energy + Delta-G solvation = -22779.171510 eV Core-core repulsion = 19239.167680 eV Total energy + Delta-G solvation = -3540.003830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.86061 -41.29649 -38.91437 -37.36089 -36.49163 -34.65928 -34.50942 -33.18109 -31.91007 -29.97970 -28.62804 -27.41737 -25.41426 -24.65315 -22.86626 -21.79176 -21.17138 -19.01880 -18.69460 -18.36248 -18.23238 -17.78515 -17.56926 -16.91319 -16.44410 -16.20911 -15.60625 -15.18448 -15.12007 -14.76948 -14.48286 -14.32023 -14.17352 -13.95951 -13.60768 -13.47670 -13.27788 -13.07720 -12.94648 -12.84718 -12.68000 -12.55234 -12.41905 -12.18792 -11.96156 -11.58332 -11.34788 -10.81295 -10.51020 -10.35188 -9.85648 -8.94533 -8.12923 -6.18025 0.42004 0.99810 1.46281 1.46629 1.48981 1.54837 1.73589 1.77443 1.84581 2.24476 2.46246 2.95969 3.21974 3.31569 3.43729 3.65386 4.03079 4.11941 4.13046 4.16575 4.40100 4.41466 4.47975 4.62766 4.75729 4.81090 4.83658 4.94640 5.18598 5.23781 5.38427 5.39179 5.43233 5.74304 6.07310 6.19877 6.28664 6.55913 6.63399 6.96184 7.02995 7.31242 7.50434 8.96054 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.003574 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.953583 B = 7833.266656 C = 8324.998629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.008 4.008 3 C -0.256 4.256 4 C 0.241 3.759 5 N -0.626 5.626 6 C 0.528 3.472 7 O -0.522 6.522 8 C 0.034 3.966 9 N -0.525 5.525 10 C 0.201 3.799 11 C -0.518 4.518 12 H 0.055 0.945 13 C 0.015 3.985 14 N -0.924 5.924 15 Si 0.946 3.054 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.072 3.928 20 C -0.064 4.064 21 C 0.243 3.757 22 N -0.495 5.495 23 N -0.413 5.413 24 O 0.087 5.913 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.180 0.820 29 H 0.432 0.568 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.008 0.992 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -16.793 0.590 19.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 C -0.279 4.279 4 C -0.008 4.008 5 N -0.280 5.280 6 C 0.315 3.685 7 O -0.394 6.394 8 C -0.096 4.096 9 N -0.248 5.248 10 C 0.076 3.924 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.184 4.184 14 N -0.565 5.565 15 Si 0.773 3.227 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.058 4.058 20 C -0.105 4.105 21 C -0.074 4.074 22 N -0.173 5.173 23 N -0.132 5.132 24 O 0.029 5.971 25 H 0.124 0.876 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.198 0.802 29 H 0.271 0.729 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.025 0.975 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.981 -16.660 1.594 20.017 hybrid contribution 1.095 1.485 -0.026 1.845 sum -9.886 -15.175 1.567 18.179 Atomic orbital electron populations 1.20593 0.80611 1.06116 1.05668 1.25109 0.97970 0.84680 0.99429 1.22795 0.89868 1.02392 1.12843 1.20829 0.89473 0.88979 1.01566 1.42607 1.06220 1.06269 1.72912 1.21268 0.92688 0.80327 0.74182 1.90614 1.33879 1.68126 1.46805 1.22108 0.92228 0.89209 1.06105 1.61901 1.28189 1.01538 1.33131 1.19592 0.85517 0.91603 0.95731 1.21401 0.92819 0.93925 1.47545 0.92720 1.25553 0.94957 1.02226 0.95632 1.69990 0.99587 1.35455 1.51474 0.85785 0.77299 0.80843 0.78778 1.20144 1.21173 1.19948 1.22068 0.96552 1.02212 0.84992 1.20230 1.00619 1.04446 0.85230 1.29353 0.92246 0.91751 0.94009 1.81112 1.11411 1.11060 1.13735 1.74004 0.98324 1.13277 1.27562 1.84740 1.10387 1.32874 1.69125 0.87619 0.87886 0.87885 0.80248 0.72884 0.88062 0.85666 0.97467 0.96305 0.92847 0.91597 0.89625 0.85015 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 71.23 0.74 0.07 16 2 C -0.01 -0.16 7.48 24.99 0.19 0.03 16 3 C -0.26 -6.32 9.79 22.52 0.22 -6.10 16 4 C 0.24 6.15 8.18 134.11 1.10 7.25 16 5 N -0.63 -13.55 5.42 -309.54 -1.68 -15.23 16 6 C 0.53 13.53 7.51 87.66 0.66 14.19 16 7 O -0.52 -16.91 11.60 -2.99 -0.03 -16.94 16 8 C 0.03 0.83 5.23 85.56 0.45 1.28 16 9 N -0.52 -18.13 4.43 -905.36 -4.01 -22.14 16 10 C 0.20 8.54 4.54 85.56 0.39 8.93 16 11 C -0.52 -26.15 8.40 25.60 0.21 -25.94 16 12 H 0.05 2.83 7.42 -2.91 -0.02 2.81 16 13 C 0.02 0.79 5.46 84.65 0.46 1.25 16 14 N -0.92 -50.15 13.29 21.45 0.28 -49.87 16 15 Si 0.95 42.26 29.54 68.60 2.03 44.28 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 C 0.07 2.35 4.78 86.30 0.41 2.76 16 20 C -0.06 -1.72 5.05 28.79 0.15 -1.58 16 21 C 0.24 7.63 15.43 89.45 1.38 9.01 16 22 N -0.49 -17.84 18.53 19.99 0.37 -17.47 16 23 N -0.41 -10.57 12.10 -56.33 -0.68 -11.25 16 24 O 0.09 1.96 11.19 71.24 0.80 2.76 16 25 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.18 4.86 6.22 -2.91 -0.02 4.84 16 29 H 0.43 6.52 8.82 -92.71 -0.82 5.71 16 30 H 0.10 1.80 6.06 -2.39 -0.01 1.79 16 31 H 0.13 2.71 7.91 -2.39 -0.02 2.69 16 32 H 0.01 0.33 6.00 -2.38 -0.01 0.31 16 33 H 0.02 0.86 7.90 -2.39 -0.02 0.84 16 34 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.07 2.53 7.01 -2.38 -0.02 2.52 16 36 H 0.09 2.78 5.86 -2.39 -0.01 2.77 16 37 H 0.13 2.57 6.36 -2.39 -0.02 2.56 16 38 H 0.12 3.44 6.26 -2.39 -0.01 3.42 16 Total: -1.00 -67.99 328.24 3.74 -64.25 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.31 Total: 10.43 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 6.36 Total: 11.17 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.71 Total: -115.96 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.76 Total: -14.18 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -67.99 3.74 -64.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072947639.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.104 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds