Wall clock time and date at job start Tue Mar 31 2020 07:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99877 * 2 1 4 4 H 1.48502 * 109.47133 * 89.99958 * 3 2 1 5 5 H 1.48496 * 109.47283 * 329.99718 * 3 2 1 6 6 H 1.48502 * 109.47007 * 209.99657 * 3 2 1 7 7 C 1.38952 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99202 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00021 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99808 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00213 * 179.97438 * 10 9 7 13 13 H 1.08999 * 109.87944 * 359.68196 * 12 10 9 14 14 C 1.54320 * 109.88857 * 238.47743 * 12 10 9 15 15 C 1.55139 * 103.01880 * 218.30900 * 14 12 10 16 16 C 1.54902 * 101.65314 * 35.65755 * 15 14 12 17 17 N 1.47449 * 109.88794 * 120.70957 * 12 10 9 18 18 C 1.46896 * 111.00194 * 356.14742 * 17 12 10 19 19 C 1.50697 * 109.47021 * 177.79650 * 18 17 12 20 20 C 1.38245 * 119.97745 * 269.72707 * 19 18 17 21 21 C 1.38194 * 120.02024 * 179.73038 * 20 19 18 22 22 C 1.38457 * 119.98095 * 0.56830 * 21 20 19 23 23 F 1.35102 * 120.02827 * 179.68926 * 22 21 20 24 24 C 1.38463 * 119.94618 * 359.70460 * 22 21 20 25 25 C 1.38194 * 119.97007 * 0.02562 * 24 22 21 26 26 H 0.97003 * 120.00176 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00176 * 359.97438 * 9 7 2 28 28 H 1.08992 * 110.70744 * 336.69345 * 14 12 10 29 29 H 1.09004 * 110.70091 * 99.92865 * 14 12 10 30 30 H 1.09001 * 110.99071 * 277.55947 * 15 14 12 31 31 H 1.09000 * 110.98818 * 153.74844 * 15 14 12 32 32 H 1.09003 * 110.37061 * 204.10175 * 16 15 14 33 33 H 1.08997 * 110.37800 * 81.76017 * 16 15 14 34 34 H 1.08997 * 109.46915 * 297.80520 * 18 17 12 35 35 H 1.09000 * 109.47181 * 57.80082 * 18 17 12 36 36 H 1.07996 * 119.98245 * 359.97438 * 20 19 18 37 37 H 1.08008 * 120.01125 * 180.25909 * 21 20 19 38 38 H 1.07994 * 120.01247 * 179.97438 * 24 22 21 39 39 H 1.08003 * 119.98256 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 1.4001 5 1 1.4456 2.6526 -0.7001 6 1 3.5457 1.4401 -0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 1 0.1707 -4.6714 0.0072 14 6 1.6388 -5.6967 1.2382 15 6 1.6793 -7.1455 0.6848 16 6 2.2254 -6.9184 -0.7469 17 7 1.6057 -5.6517 -1.1909 18 6 2.5153 -4.8983 -2.0644 19 6 2.9051 -5.7545 -3.2417 20 6 4.0248 -6.5618 -3.1681 21 6 4.3799 -7.3515 -4.2452 22 6 3.6205 -7.3251 -5.4026 23 9 3.9703 -8.0920 -6.4584 24 6 2.5023 -6.5118 -5.4772 25 6 2.1460 -5.7272 -4.3968 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3534 -2.3907 0.0005 28 1 2.6197 -5.3976 1.6073 29 1 0.8864 -5.6042 2.0215 30 1 0.6804 -7.5810 0.6572 31 1 2.3587 -7.7672 1.2678 32 1 1.9262 -7.7371 -1.4014 33 1 3.3111 -6.8236 -0.7283 34 1 2.0148 -3.9977 -2.4198 35 1 3.4090 -4.6208 -1.5054 36 1 4.6200 -6.5783 -2.2671 37 1 5.2524 -7.9854 -4.1860 38 1 1.9094 -6.4901 -6.3796 39 1 1.2741 -5.0924 -4.4550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081622647.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:02 Heat of formation + Delta-G solvation = -47.301047 kcal Electronic energy + Delta-G solvation = -23346.303904 eV Core-core repulsion = 19782.210600 eV Total energy + Delta-G solvation = -3564.093304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.90317 -40.19313 -38.76899 -36.95413 -34.37817 -32.91991 -31.25613 -31.12086 -29.80067 -28.86339 -25.27511 -24.67020 -23.07330 -21.89401 -21.51874 -20.68075 -19.16359 -17.97222 -17.64039 -16.86784 -16.30388 -15.90157 -15.58725 -15.50967 -14.72866 -14.59736 -14.20015 -13.91000 -13.79431 -13.62113 -13.43782 -13.05553 -12.96784 -12.50621 -12.23920 -11.77516 -11.47279 -11.31149 -11.18313 -11.01997 -11.01323 -10.91821 -10.73776 -10.56138 -10.27132 -9.95678 -9.55829 -9.08925 -8.96638 -8.58183 -8.15708 -7.68567 -6.84686 -3.97864 1.15140 1.25164 3.20917 3.30295 3.49212 3.51985 3.66156 4.17441 4.25315 4.43458 4.66919 4.73142 4.76532 4.86119 4.90193 5.07359 5.20435 5.25599 5.34593 5.34876 5.59330 5.67371 5.79105 5.84051 5.94032 5.96225 5.97078 6.03106 6.10548 6.12363 6.22034 6.25383 6.40303 6.47429 6.70736 6.91934 7.17898 7.24101 7.69975 7.98975 8.48449 8.67810 9.37004 9.74712 10.58170 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016507 B = 0.004333 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.863639 B = 6460.000331 C = 7560.348948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.005 4.005 3 Si 1.092 2.908 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.385 4.385 8 H 0.100 0.900 9 N -0.561 5.561 10 C 0.427 3.573 11 O -0.589 6.589 12 C 0.061 3.939 13 H 0.088 0.912 14 C -0.125 4.125 15 C -0.127 4.127 16 C 0.041 3.959 17 N -0.500 5.500 18 C 0.059 3.941 19 C -0.074 4.074 20 C -0.085 4.085 21 C -0.155 4.155 22 C 0.086 3.914 23 F -0.146 7.146 24 C -0.155 4.155 25 C -0.073 4.073 26 H 0.263 0.737 27 H 0.377 0.623 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 -13.842 -4.723 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.918 3.082 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.515 4.515 8 H 0.118 0.882 9 N -0.196 5.196 10 C 0.213 3.787 11 O -0.475 6.475 12 C -0.050 4.050 13 H 0.106 0.894 14 C -0.164 4.164 15 C -0.165 4.165 16 C -0.087 4.087 17 N -0.225 5.225 18 C -0.067 4.067 19 C -0.075 4.075 20 C -0.103 4.103 21 C -0.174 4.174 22 C 0.067 3.933 23 F -0.125 7.125 24 C -0.174 4.174 25 C -0.092 4.092 26 H 0.075 0.925 27 H 0.211 0.789 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.587 -12.257 -5.057 13.510 hybrid contribution 0.289 -1.630 0.195 1.667 sum 2.876 -13.888 -4.862 14.993 Atomic orbital electron populations 1.70872 1.06571 1.29629 1.46208 1.26542 0.96491 1.02731 0.95137 0.83108 0.74432 0.73405 0.77233 1.21026 1.20538 1.20872 1.20601 0.94745 0.83878 1.52248 0.88197 1.42101 1.08359 1.05713 1.63471 1.20059 0.88343 0.84851 0.85439 1.90427 1.13815 1.86875 1.56424 1.22372 0.99958 0.92431 0.90272 0.89426 1.22693 1.02826 0.94143 0.96759 1.22688 1.01430 0.96635 0.95760 1.23094 0.97644 0.92609 0.95307 1.64109 1.40143 1.03755 1.14503 1.21890 0.98972 0.94479 0.91386 1.20085 0.94566 0.97028 0.95836 1.21015 0.96483 0.94910 0.97936 1.21068 1.01108 1.02394 0.92812 1.17700 0.96640 0.94157 0.84836 1.91471 1.91849 1.73692 1.55451 1.21122 0.97191 0.98476 1.00580 1.20992 0.98959 0.97530 0.91721 0.92546 0.78926 0.90296 0.90835 0.90875 0.91008 0.90589 0.93216 0.89958 0.88339 0.85193 0.85064 0.85010 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.43 13.68 55.50 0.76 -23.67 16 2 C -0.01 -0.14 5.50 -17.47 -0.10 -0.24 16 3 Si 1.09 23.69 29.92 -169.99 -5.09 18.60 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.39 -10.43 9.68 -14.93 -0.14 -10.58 16 8 H 0.10 2.87 7.16 -52.49 -0.38 2.50 16 9 N -0.56 -13.60 5.28 -10.96 -0.06 -13.65 16 10 C 0.43 9.54 5.03 -10.99 -0.06 9.48 16 11 O -0.59 -14.88 13.40 5.54 0.07 -14.81 16 12 C 0.06 1.07 3.84 -67.88 -0.26 0.81 16 13 H 0.09 1.45 7.94 -51.93 -0.41 1.04 16 14 C -0.13 -1.90 6.43 -24.91 -0.16 -2.06 16 15 C -0.13 -1.58 7.08 -24.60 -0.17 -1.76 16 16 C 0.04 0.57 5.38 -2.30 -0.01 0.56 16 17 N -0.50 -8.15 5.25 -226.16 -1.19 -9.34 16 18 C 0.06 1.04 3.88 -4.98 -0.02 1.02 16 19 C -0.07 -1.10 4.83 -104.62 -0.51 -1.61 16 20 C -0.08 -1.13 8.48 -39.59 -0.34 -1.46 16 21 C -0.16 -1.89 10.03 -39.52 -0.40 -2.29 16 22 C 0.09 1.10 7.30 -39.42 -0.29 0.82 16 23 F -0.15 -1.89 17.27 2.25 0.04 -1.85 16 24 C -0.15 -1.92 10.03 -39.51 -0.40 -2.32 16 25 C -0.07 -0.99 9.70 -39.59 -0.38 -1.38 16 26 H 0.26 6.92 6.78 -40.82 -0.28 6.64 16 27 H 0.38 8.60 6.58 -40.82 -0.27 8.33 16 28 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.71 6.25 -51.93 -0.32 0.38 16 34 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 35 H 0.10 2.01 5.28 -51.93 -0.27 1.74 16 36 H 0.13 1.62 7.12 -52.49 -0.37 1.25 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -29.82 322.27 -8.68 -38.49 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.85 Total: 12.37 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -3.23 Total: -11.00 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.49 Total: -46.66 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.07 Total: -14.81 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.09 Total: 18.60 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.82 -8.68 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081622647.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.811 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds