Wall clock time and date at job start Tue Mar 31 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40958 * 126.73532 * 2 1 4 4 C 1.36518 * 103.92260 * 180.11580 * 3 2 1 5 5 N 1.38730 * 126.88244 * 179.87434 * 4 3 2 6 6 C 1.34769 * 120.00068 * 179.70815 * 5 4 3 7 7 O 1.21277 * 120.00157 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99782 * 179.72354 * 6 5 4 9 9 N 1.46901 * 109.47218 * 179.97438 * 8 6 5 10 10 C 1.46901 * 110.99970 * 190.00052 * 9 8 6 11 11 C 1.50705 * 109.47022 * 164.60600 * 10 9 8 12 12 H 1.08002 * 119.99982 * 1.01674 * 11 10 9 13 13 C 1.37868 * 119.99999 * 181.02313 * 11 10 9 14 14 N 1.31516 * 120.00306 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 120.00072 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.47024 * 90.00210 * 15 13 11 17 17 H 1.48502 * 109.47005 * 210.00134 * 15 13 11 18 18 H 1.48496 * 109.46727 * 329.99555 * 15 13 11 19 19 C 1.46904 * 110.99804 * 66.04895 * 9 8 6 20 20 C 1.53001 * 109.47055 * 60.48679 * 19 9 8 21 21 C 1.47203 * 109.46713 * 178.15974 * 20 19 9 22 22 N 8.65300 * 147.04161 * 260.60764 * 2 1 3 23 23 O 1.34248 * 106.24399 * 359.60914 * 4 3 2 24 24 N 1.20915 * 111.48244 * 0.26303 * 23 4 3 25 25 H 1.08998 * 109.47603 * 270.30963 * 1 2 3 26 26 H 1.09006 * 109.47251 * 30.31052 * 1 2 3 27 27 H 1.09002 * 109.47254 * 150.30253 * 1 2 3 28 28 H 1.08004 * 128.03405 * 0.02562 * 3 2 1 29 29 H 0.96996 * 119.99525 * 359.71187 * 5 4 3 30 30 H 1.08996 * 109.47252 * 300.00290 * 8 6 5 31 31 H 1.09006 * 109.47244 * 59.99936 * 8 6 5 32 32 H 1.09003 * 109.47117 * 284.60164 * 10 9 8 33 33 H 1.08995 * 109.47535 * 44.60341 * 10 9 8 34 34 H 0.96998 * 120.00624 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.47033 * 180.48829 * 19 9 8 36 36 H 1.09004 * 109.46771 * 300.48860 * 19 9 8 37 37 H 1.09000 * 109.47178 * 298.15568 * 20 19 9 38 38 H 1.08997 * 109.46907 * 58.16517 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3500 1.1296 0.0000 4 6 3.6084 0.6003 -0.0027 5 7 4.8061 1.3004 -0.0062 6 6 5.9769 0.6328 -0.0026 7 8 5.9834 -0.5800 0.0032 8 6 7.2779 1.3932 -0.0127 9 7 8.3996 0.4447 -0.0058 10 6 9.6742 1.1383 0.2230 11 6 10.7327 0.1334 0.5983 12 1 10.4874 -0.9174 0.6446 13 6 12.0140 0.5554 0.8826 14 7 12.9376 -0.3215 1.2106 15 14 12.4383 2.3729 0.8019 16 1 12.2050 2.9950 2.1300 17 1 13.8658 2.5316 0.4248 18 1 11.5814 3.0365 -0.2132 19 6 8.4395 -0.3326 -1.2517 20 6 8.6192 0.6157 -2.4389 21 6 8.7034 -0.1664 -3.6831 22 7 8.7674 -0.7682 -4.6444 23 8 3.4549 -0.7333 0.0048 24 7 2.2865 -1.0445 0.0061 25 1 -0.3634 0.0056 1.0276 26 1 -0.3634 0.8872 -0.5187 27 1 -0.3634 -0.8927 -0.5091 28 1 2.0663 2.1718 0.0004 29 1 4.8009 2.2703 -0.0112 30 1 7.3302 2.0118 -0.9086 31 1 7.3343 2.0286 0.8712 32 1 9.9733 1.6583 -0.6871 33 1 9.5553 1.8598 1.0313 34 1 13.8391 -0.0246 1.4110 35 1 9.2739 -1.0329 -1.2165 36 1 7.5064 -0.8845 -1.3656 37 1 7.7684 1.2948 -2.4935 38 1 9.5358 1.1911 -2.3087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104066703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:47 Heat of formation + Delta-G solvation = 74.663734 kcal Electronic energy + Delta-G solvation = -22772.849356 eV Core-core repulsion = 19233.964803 eV Total energy + Delta-G solvation = -3538.884553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.97477 -40.26070 -37.69558 -36.04729 -35.50902 -34.81765 -32.66257 -31.20114 -30.49402 -28.88295 -28.79533 -26.23058 -23.69437 -23.42257 -22.24914 -20.13340 -19.88362 -18.36974 -17.84712 -17.75813 -17.12684 -16.76460 -16.13370 -15.74278 -15.10286 -14.75318 -14.17361 -14.03036 -13.98675 -13.77334 -13.60120 -13.41030 -13.24046 -12.92784 -12.58299 -12.37782 -12.28691 -11.86559 -11.63217 -11.56609 -11.34593 -11.30361 -10.86207 -10.73956 -10.47765 -10.17586 -10.10627 -9.80603 -9.42703 -8.67250 -8.66142 -7.69264 -6.12989 -4.12322 1.24829 2.01070 2.03046 2.63185 2.99272 3.02053 3.19223 3.23693 3.28282 3.31495 3.99180 4.13002 4.31358 4.50767 4.61177 4.68865 4.83392 5.08648 5.13249 5.16140 5.21322 5.24115 5.31061 5.37765 5.45742 5.50543 5.63795 5.85067 5.99901 6.09072 6.50172 6.61473 6.72642 6.78787 7.35166 7.57308 7.67694 7.80846 7.89607 8.23289 8.51281 8.98791 9.45916 11.00014 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.003656 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.995841 B = 7656.030164 C = 8389.289756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.035 3.965 3 C -0.285 4.285 4 C 0.225 3.775 5 N -0.635 5.635 6 C 0.503 3.497 7 O -0.464 6.464 8 C 0.031 3.969 9 N -0.499 5.499 10 C 0.157 3.843 11 C -0.513 4.513 12 H 0.084 0.916 13 C 0.071 3.929 14 N -0.895 5.895 15 Si 0.872 3.128 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.060 3.940 20 C -0.075 4.075 21 C 0.222 3.778 22 N -0.451 5.451 23 O 0.113 5.887 24 N -0.371 5.371 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.173 0.827 29 H 0.430 0.570 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.001 0.999 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.828 11.095 -2.163 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C -0.312 4.312 4 C 0.064 3.936 5 N -0.291 5.291 6 C 0.290 3.710 7 O -0.332 6.332 8 C -0.101 4.101 9 N -0.222 5.222 10 C 0.032 3.968 11 C -0.551 4.551 12 H 0.102 0.898 13 C -0.132 4.132 14 N -0.533 5.533 15 Si 0.699 3.301 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.069 4.069 20 C -0.117 4.117 21 C -0.096 4.096 22 N -0.129 5.129 23 O 0.053 5.947 24 N -0.081 5.081 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.191 0.809 29 H 0.270 0.730 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.661 7.593 -3.121 22.232 hybrid contribution 0.505 3.269 -0.176 3.312 sum -20.157 10.861 -3.298 23.133 Atomic orbital electron populations 1.20154 0.85918 1.03723 1.03368 1.23188 0.98795 0.88517 1.01830 1.21766 0.89042 1.01226 1.19202 1.20898 0.88314 0.84772 0.99585 1.43121 1.01682 1.10482 1.73841 1.21508 0.84818 0.89132 0.75503 1.90815 1.86035 1.13526 1.42815 1.22084 0.89083 0.95187 1.03727 1.61983 1.02926 1.24222 1.33038 1.20378 0.85917 0.94975 0.95515 1.20957 0.92118 0.95478 1.46548 0.89778 1.24894 0.96268 0.97173 0.94840 1.69881 1.03098 1.33786 1.46545 0.86926 0.78078 0.86240 0.78818 1.20116 1.21206 1.19172 1.22341 1.04956 0.95809 0.83830 1.20227 1.05244 0.98586 0.87599 1.29051 0.92683 0.93699 0.94170 1.81160 1.09452 1.09906 1.12386 1.85160 1.21497 1.19631 1.68410 1.73966 0.88573 1.23102 1.22476 0.90137 0.90040 0.90554 0.80944 0.72961 0.91320 0.87020 0.98164 0.95296 0.92500 0.88076 0.89451 0.88701 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.47 36.00 0.38 -0.12 16 2 C 0.04 0.38 7.31 -82.20 -0.60 -0.22 16 3 C -0.29 -2.57 11.15 -39.17 -0.44 -3.01 16 4 C 0.23 2.57 7.92 -15.05 -0.12 2.45 16 5 N -0.64 -5.72 5.39 -11.79 -0.06 -5.79 16 6 C 0.50 6.34 7.52 -10.99 -0.08 6.26 16 7 O -0.46 -8.10 13.14 -15.84 -0.21 -8.31 16 8 C 0.03 0.36 5.21 -4.98 -0.03 0.33 16 9 N -0.50 -8.55 4.40 -237.50 -1.05 -9.59 16 10 C 0.16 3.11 3.67 -4.97 -0.02 3.09 16 11 C -0.51 -13.15 9.11 -34.44 -0.31 -13.46 16 12 H 0.08 2.44 7.70 -52.49 -0.40 2.04 16 13 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 15 Si 0.87 19.31 27.45 -169.99 -4.67 14.64 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 18 H -0.27 -5.38 6.57 56.52 0.37 -5.01 16 19 C 0.06 1.00 4.81 -3.82 -0.02 0.98 16 20 C -0.07 -0.99 5.05 -29.52 -0.15 -1.14 16 21 C 0.22 3.47 15.43 -20.76 -0.32 3.15 16 22 N -0.45 -8.15 18.54 42.15 0.78 -7.37 16 23 O 0.11 1.72 9.63 -4.78 -0.05 1.68 16 24 N -0.37 -5.33 12.06 33.48 0.40 -4.93 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 29 H 0.43 1.86 8.82 -40.82 -0.36 1.50 16 30 H 0.07 0.57 6.05 -51.93 -0.31 0.26 16 31 H 0.11 1.08 7.87 -51.93 -0.41 0.67 16 32 H 0.00 0.02 5.01 -51.93 -0.26 -0.24 16 33 H 0.03 0.56 7.19 -51.93 -0.37 0.18 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.10 1.96 7.15 -51.93 -0.37 1.59 16 36 H 0.09 1.47 5.86 -51.93 -0.30 1.17 16 37 H 0.09 0.93 6.38 -51.93 -0.33 0.60 16 38 H 0.12 1.60 6.18 -51.93 -0.32 1.28 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -34.92 327.47 -5.25 -40.17 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.30 Total: -0.20 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.81 Total: 0.10 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.85 Total: -53.01 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.25 Total: -6.63 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.67 Total: 14.64 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.92 -5.25 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104066703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.832 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds