Wall clock time and date at job start Tue Mar 31 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99501 * 2 1 4 4 O 1.21279 * 120.00193 * 354.64074 * 3 2 1 5 5 C 1.50708 * 119.99688 * 174.64243 * 3 2 1 6 6 C 1.50700 * 115.54902 * 305.12329 * 5 3 2 7 7 O 1.21295 * 119.99674 * 123.15298 * 6 5 3 8 8 N 1.34772 * 120.00226 * 303.14835 * 6 5 3 9 9 C 1.40152 * 120.00297 * 172.34932 * 8 6 5 10 10 C 1.40407 * 125.97215 * 359.72437 * 9 8 6 11 11 C 1.35234 * 107.86999 * 179.97438 * 10 9 8 12 12 N 1.34973 * 107.85944 * 0.02562 * 11 10 9 13 13 C 1.46505 * 125.97515 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46960 * 124.99764 * 13 12 11 15 15 H 1.08000 * 120.00592 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99809 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46665 * 60.00147 * 18 16 14 20 20 H 1.48499 * 109.47101 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47516 * 300.00281 * 18 16 14 22 22 N 1.31222 * 125.97577 * 179.41730 * 9 8 6 23 23 C 1.53002 * 117.49612 * 90.79420 * 5 3 2 24 24 C 1.52996 * 117.49764 * 159.44922 * 5 3 2 25 25 H 1.09001 * 109.46774 * 60.00810 * 1 2 3 26 26 H 1.09008 * 109.46543 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47521 * 300.00165 * 1 2 3 28 28 H 0.96993 * 120.00063 * 179.97438 * 2 1 3 29 29 H 0.97008 * 119.99638 * 352.07030 * 8 6 5 30 30 H 1.08001 * 126.06513 * 0.02562 * 10 9 8 31 31 H 1.07996 * 126.07427 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.46784 * 244.99538 * 13 12 11 33 33 H 1.09000 * 109.47122 * 4.99630 * 13 12 11 34 34 H 0.96998 * 119.99983 * 179.97438 * 17 16 14 35 35 H 1.09003 * 117.49591 * 215.00578 * 23 5 3 36 36 H 1.08997 * 117.49815 * 0.02562 * 23 5 3 37 37 H 1.09002 * 117.49932 * 359.97438 * 24 5 3 38 38 H 1.09007 * 117.49827 * 144.97351 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5364 2.2152 -0.0981 5 6 3.6410 1.1702 0.1219 6 6 4.1974 0.4419 1.3182 7 8 4.9941 -0.4593 1.1628 8 7 3.8098 0.7921 2.5605 9 6 4.1993 0.0164 3.6609 10 6 4.9836 -1.1472 3.6135 11 6 5.1360 -1.5968 4.8797 12 7 4.4749 -0.7539 5.7007 13 6 4.3812 -0.8688 7.1583 14 6 4.8559 0.4120 7.7947 15 1 5.1940 1.2298 7.1755 16 6 4.8587 0.5400 9.1675 17 7 4.4475 -0.4560 9.9216 18 14 5.4477 2.1274 9.9565 19 1 4.5998 3.2549 9.4927 20 1 5.3515 2.0114 11.4338 21 1 6.8594 2.3782 9.5700 22 7 3.8994 0.2537 4.9162 23 6 4.4548 1.1270 -1.1730 24 6 4.3859 2.4187 -0.3546 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9500 -0.8400 0.0004 29 1 3.2647 1.5834 2.6935 30 1 5.3933 -1.6020 2.7237 31 1 5.6886 -2.4745 5.1807 32 1 3.3452 -1.0535 7.4423 33 1 5.0042 -1.6961 7.4982 34 1 4.4498 -0.3661 10.8874 35 1 5.3927 0.5718 -1.1596 36 1 3.9038 1.0969 -2.1130 37 1 3.7897 3.2378 -0.7567 38 1 5.2784 2.7136 0.1974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117854983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:28 Heat of formation + Delta-G solvation = 41.108091 kcal Electronic energy + Delta-G solvation = -22747.422197 eV Core-core repulsion = 19207.082562 eV Total energy + Delta-G solvation = -3540.339634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13853 -40.32686 -39.00089 -36.36680 -34.90435 -34.80526 -33.37810 -31.03324 -29.40403 -28.01643 -26.86199 -25.06832 -23.07928 -22.79226 -22.13098 -20.88150 -20.07106 -19.58593 -18.23407 -16.78297 -16.61738 -16.40299 -16.04971 -15.67077 -15.25470 -15.11956 -14.82441 -14.46060 -14.14668 -13.79912 -13.36950 -13.10367 -12.82621 -12.57590 -12.39581 -12.29930 -11.97198 -11.83840 -11.37819 -11.09511 -10.96243 -10.88158 -10.51979 -10.39168 -10.27924 -10.02283 -9.68479 -9.54363 -9.45643 -8.65196 -8.21541 -7.55623 -6.26768 -4.32079 2.00544 2.15146 2.57413 2.77254 2.81428 3.24747 3.28016 3.32598 3.39175 3.64974 3.77332 4.29380 4.30101 4.39666 4.45090 4.50488 4.94544 5.08512 5.21621 5.23328 5.33427 5.47405 5.50994 5.52931 5.73292 5.77465 6.03320 6.16682 6.38925 6.49722 6.79938 7.00757 7.08933 7.29348 7.45621 7.67589 7.82185 7.84658 7.98238 8.06676 8.56236 8.76633 9.33828 10.82012 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003363 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.353748 B = 8324.771602 C = 8357.119298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.726 5.726 3 C 0.557 3.443 4 O -0.526 6.526 5 C -0.201 4.201 6 C 0.562 3.438 7 O -0.505 6.505 8 N -0.622 5.622 9 C 0.255 3.745 10 C -0.288 4.288 11 C 0.053 3.947 12 N -0.316 5.316 13 C 0.258 3.742 14 C -0.531 4.531 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.895 5.895 18 Si 0.908 3.092 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.300 5.300 23 C -0.121 4.121 24 C -0.125 4.125 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.407 0.593 29 H 0.413 0.587 30 H 0.159 0.841 31 H 0.169 0.831 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -0.770 -20.970 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.377 5.377 3 C 0.342 3.658 4 O -0.402 6.402 5 C -0.207 4.207 6 C 0.346 3.654 7 O -0.379 6.379 8 N -0.269 5.269 9 C 0.002 3.998 10 C -0.319 4.319 11 C -0.097 4.097 12 N -0.098 5.098 13 C 0.141 3.859 14 C -0.569 4.569 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 N -0.131 5.131 23 C -0.159 4.159 24 C -0.162 4.162 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.241 0.759 29 H 0.249 0.751 30 H 0.176 0.824 31 H 0.186 0.814 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.136 0.864 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.713 0.016 -19.987 20.329 hybrid contribution 0.546 0.170 0.298 0.645 sum -3.168 0.186 -19.689 19.943 Atomic orbital electron populations 1.21610 0.78847 1.02683 1.02559 1.45720 1.08088 1.08676 1.75242 1.19068 0.86843 0.83894 0.76034 1.90730 1.69243 1.31423 1.48826 1.21461 0.92800 1.08436 0.98053 1.18949 0.81192 0.83179 0.82088 1.90672 1.32289 1.29724 1.85170 1.42353 1.52497 1.28494 1.03566 1.19075 1.00149 0.93531 0.87069 1.21455 1.11939 1.00527 0.97996 1.22567 0.99037 0.97729 0.90380 1.49133 1.35971 1.16194 1.08534 1.19768 0.99235 0.99322 0.67599 1.21214 1.44332 0.99719 0.91638 0.91333 1.24938 0.94890 0.97340 0.96809 1.69905 1.46439 1.31440 1.05570 0.86380 0.79412 0.82881 0.77808 1.19895 1.21002 1.20009 1.77373 1.23705 1.12688 0.99299 1.23112 1.01033 1.00111 0.91630 1.23152 1.00952 0.91001 1.01114 0.91939 0.90314 0.91849 0.75936 0.75103 0.82388 0.81369 0.93660 0.92459 0.92229 0.86288 0.87316 0.86391 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.71 59.85 0.64 1.33 16 2 N -0.73 -6.88 5.66 -67.07 -0.38 -7.26 16 3 C 0.56 6.47 7.13 -10.98 -0.08 6.40 16 4 O -0.53 -7.58 16.47 5.56 0.09 -7.49 16 5 C -0.20 -2.17 2.31 -156.81 -0.36 -2.53 16 6 C 0.56 7.81 7.05 -10.99 -0.08 7.74 16 7 O -0.51 -8.06 13.69 5.54 0.08 -7.99 16 8 N -0.62 -9.80 5.42 -11.13 -0.06 -9.86 16 9 C 0.25 5.02 8.10 -154.39 -1.25 3.77 16 10 C -0.29 -5.48 9.61 -39.84 -0.38 -5.86 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 N -0.32 -7.24 3.67 -62.56 -0.23 -7.47 16 13 C 0.26 6.49 6.26 -5.19 -0.03 6.45 16 14 C -0.53 -14.71 9.23 -34.44 -0.32 -15.02 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.90 -25.20 13.29 55.43 0.74 -24.46 16 18 Si 0.91 21.34 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 N -0.30 -6.85 12.42 31.44 0.39 -6.46 16 23 C -0.12 -1.00 9.75 -26.70 -0.26 -1.26 16 24 C -0.12 -1.12 9.75 -26.70 -0.26 -1.38 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.41 3.32 8.83 -40.82 -0.36 2.96 16 29 H 0.41 5.98 8.83 -40.82 -0.36 5.62 16 30 H 0.16 2.85 5.96 -52.49 -0.31 2.54 16 31 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.12 0.98 7.85 -51.93 -0.41 0.58 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.12 1.02 7.82 -51.93 -0.41 0.61 16 38 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -33.20 338.67 -6.74 -39.94 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.77 Total: 7.53 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.68 Total: 2.10 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.46 Total: -55.51 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.17 Total: -15.47 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.20 -6.74 -39.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.048 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds