Wall clock time and date at job start Tue Mar 31 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99501 * 2 1 4 4 O 1.21279 * 120.00193 * 354.64074 * 3 2 1 5 5 C 1.50708 * 119.99688 * 174.64243 * 3 2 1 6 6 C 1.50700 * 115.54902 * 305.12329 * 5 3 2 7 7 O 1.21295 * 119.99674 * 123.15298 * 6 5 3 8 8 N 1.34772 * 120.00226 * 303.14835 * 6 5 3 9 9 C 1.40152 * 120.00297 * 172.34932 * 8 6 5 10 10 C 1.40407 * 125.97215 * 359.72437 * 9 8 6 11 11 C 1.35234 * 107.86999 * 179.97438 * 10 9 8 12 12 N 1.34973 * 107.85944 * 0.02562 * 11 10 9 13 13 C 1.46505 * 125.97515 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46960 * 124.99764 * 13 12 11 15 15 H 1.08000 * 120.00592 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99809 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46665 * 60.00147 * 18 16 14 20 20 H 1.48499 * 109.47101 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47516 * 300.00281 * 18 16 14 22 22 N 1.31222 * 125.97577 * 179.41730 * 9 8 6 23 23 C 1.53002 * 117.49612 * 90.79420 * 5 3 2 24 24 C 1.52996 * 117.49764 * 159.44922 * 5 3 2 25 25 H 1.09001 * 109.46774 * 60.00810 * 1 2 3 26 26 H 1.09008 * 109.46543 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47521 * 300.00165 * 1 2 3 28 28 H 0.96993 * 120.00063 * 179.97438 * 2 1 3 29 29 H 0.97008 * 119.99638 * 352.07030 * 8 6 5 30 30 H 1.08001 * 126.06513 * 0.02562 * 10 9 8 31 31 H 1.07996 * 126.07427 * 180.02562 * 11 10 9 32 32 H 1.09001 * 109.46784 * 244.99538 * 13 12 11 33 33 H 1.09000 * 109.47122 * 4.99630 * 13 12 11 34 34 H 0.96998 * 119.99983 * 179.97438 * 17 16 14 35 35 H 1.09003 * 117.49591 * 215.00578 * 23 5 3 36 36 H 1.08997 * 117.49815 * 0.02562 * 23 5 3 37 37 H 1.09002 * 117.49932 * 359.97438 * 24 5 3 38 38 H 1.09007 * 117.49827 * 144.97351 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5364 2.2152 -0.0981 5 6 3.6410 1.1702 0.1219 6 6 4.1974 0.4419 1.3182 7 8 4.9941 -0.4593 1.1628 8 7 3.8098 0.7921 2.5605 9 6 4.1993 0.0164 3.6609 10 6 4.9836 -1.1472 3.6135 11 6 5.1360 -1.5968 4.8797 12 7 4.4749 -0.7539 5.7007 13 6 4.3812 -0.8688 7.1583 14 6 4.8559 0.4120 7.7947 15 1 5.1940 1.2298 7.1755 16 6 4.8587 0.5400 9.1675 17 7 4.4475 -0.4560 9.9216 18 14 5.4477 2.1274 9.9565 19 1 4.5998 3.2549 9.4927 20 1 5.3515 2.0114 11.4338 21 1 6.8594 2.3782 9.5700 22 7 3.8994 0.2537 4.9162 23 6 4.4548 1.1270 -1.1730 24 6 4.3859 2.4187 -0.3546 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.9500 -0.8400 0.0004 29 1 3.2647 1.5834 2.6935 30 1 5.3933 -1.6020 2.7237 31 1 5.6886 -2.4745 5.1807 32 1 3.3452 -1.0535 7.4423 33 1 5.0042 -1.6961 7.4982 34 1 4.4498 -0.3661 10.8874 35 1 5.3927 0.5718 -1.1596 36 1 3.9038 1.0969 -2.1130 37 1 3.7897 3.2378 -0.7567 38 1 5.2784 2.7136 0.1974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117854983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:28 Heat of formation + Delta-G solvation = 17.550943 kcal Electronic energy + Delta-G solvation = -22748.443711 eV Core-core repulsion = 19207.082562 eV Total energy + Delta-G solvation = -3541.361149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.40547 -41.58454 -40.13055 -37.24512 -36.26187 -35.71509 -35.29822 -32.81900 -31.00215 -28.99991 -28.46909 -26.23513 -24.74783 -23.50510 -23.26633 -22.28078 -21.48230 -20.68322 -19.32428 -18.70676 -18.22320 -17.28592 -17.12426 -17.02184 -16.52152 -16.39232 -16.00426 -15.80721 -15.45681 -15.16202 -14.57825 -14.23985 -14.12306 -13.89816 -13.85399 -13.71888 -13.17649 -12.95915 -12.75877 -12.62026 -12.31181 -12.20383 -12.10993 -11.76894 -11.64334 -11.44006 -11.29198 -10.85230 -10.73058 -10.26092 -9.81048 -9.17794 -8.34701 -6.48620 0.76358 1.17846 1.28337 1.34805 1.37942 1.39607 1.48584 2.00405 2.10594 2.21236 2.36271 2.70671 2.97500 3.33182 3.53276 3.59101 3.75420 3.95330 4.23876 4.37849 4.55915 4.57880 4.66892 4.70649 4.85648 4.86269 4.89330 4.90235 4.99987 5.07585 5.11979 5.27272 5.54912 5.77579 5.85632 6.09795 6.25978 6.31139 6.62653 6.82851 6.98466 7.02186 7.21461 8.72889 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003363 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.353748 B = 8324.771602 C = 8357.119298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.720 5.720 3 C 0.556 3.444 4 O -0.559 6.559 5 C -0.212 4.212 6 C 0.569 3.431 7 O -0.522 6.522 8 N -0.622 5.622 9 C 0.263 3.737 10 C -0.289 4.289 11 C 0.059 3.941 12 N -0.342 5.342 13 C 0.272 3.728 14 C -0.550 4.550 15 H 0.051 0.949 16 C 0.021 3.979 17 N -0.920 5.920 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.272 1.272 21 H -0.269 1.269 22 N -0.347 5.347 23 C -0.099 4.099 24 C -0.120 4.120 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.414 0.586 29 H 0.418 0.582 30 H 0.172 0.828 31 H 0.204 0.796 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.273 0.727 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 -0.788 -22.433 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.370 5.370 3 C 0.341 3.659 4 O -0.437 6.437 5 C -0.218 4.218 6 C 0.355 3.645 7 O -0.396 6.396 8 N -0.270 5.270 9 C 0.009 3.991 10 C -0.320 4.320 11 C -0.090 4.090 12 N -0.124 5.124 13 C 0.154 3.846 14 C -0.588 4.588 15 H 0.070 0.930 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.197 1.197 21 H -0.194 1.194 22 N -0.178 5.178 23 C -0.137 4.137 24 C -0.158 4.158 25 H 0.083 0.917 26 H 0.126 0.874 27 H 0.067 0.933 28 H 0.249 0.751 29 H 0.254 0.746 30 H 0.190 0.810 31 H 0.221 0.779 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.056 -0.034 -21.484 21.700 hybrid contribution 0.326 0.126 0.619 0.711 sum -2.731 0.092 -20.864 21.042 Atomic orbital electron populations 1.21754 0.77904 1.04455 1.01953 1.45776 1.08837 1.08454 1.73953 1.19178 0.87065 0.83927 0.75684 1.90716 1.69825 1.32549 1.50647 1.21346 0.92575 1.10069 0.97857 1.19420 0.80370 0.82701 0.81978 1.90649 1.33107 1.30492 1.85382 1.42546 1.52754 1.28458 1.03250 1.19414 0.98828 0.93703 0.87155 1.21671 1.11759 1.00280 0.98293 1.23217 0.97871 0.97879 0.90017 1.48865 1.37977 1.17576 1.07938 1.19350 0.97605 0.98390 0.69283 1.21376 1.44965 1.00349 0.92153 0.93048 1.25708 0.94747 1.00410 0.97132 1.69978 1.46842 1.33006 1.05999 0.85437 0.78955 0.78882 0.77392 1.20038 1.19683 1.19400 1.77289 1.25758 1.14038 1.00694 1.23276 1.00510 0.98803 0.91068 1.23267 1.00619 0.91007 1.00887 0.91700 0.87414 0.93289 0.75091 0.74554 0.81037 0.77906 0.96053 0.92099 0.91785 0.85931 0.85209 0.85921 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.71 127.77 1.37 2.57 16 2 N -0.72 -12.59 5.66 -484.50 -2.74 -15.33 16 3 C 0.56 12.25 7.13 87.66 0.63 12.87 16 4 O -0.56 -15.70 16.47 -3.03 -0.05 -15.75 16 5 C -0.21 -4.21 2.31 -53.67 -0.12 -4.33 16 6 C 0.57 15.05 7.05 87.66 0.62 15.67 16 7 O -0.52 -15.74 13.69 -3.08 -0.04 -15.78 16 8 N -0.62 -19.27 5.42 -307.52 -1.67 -20.94 16 9 C 0.26 10.31 8.10 133.33 1.08 11.39 16 10 C -0.29 -10.68 9.61 22.11 0.21 -10.47 16 11 C 0.06 2.22 11.44 83.52 0.96 3.18 16 12 N -0.34 -15.80 3.67 -351.84 -1.29 -17.09 16 13 C 0.27 14.01 6.26 85.63 0.54 14.55 16 14 C -0.55 -31.05 9.23 25.60 0.24 -30.81 16 15 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 16 C 0.02 1.14 5.46 84.66 0.46 1.60 16 17 N -0.92 -51.95 13.29 21.45 0.28 -51.66 16 18 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 N -0.35 -16.13 12.42 -54.45 -0.68 -16.81 16 23 C -0.10 -1.36 9.75 30.62 0.30 -1.06 16 24 C -0.12 -1.92 9.75 30.61 0.30 -1.62 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.41 6.00 8.83 -92.71 -0.82 5.18 16 29 H 0.42 12.09 8.83 -92.70 -0.82 11.27 16 30 H 0.17 5.87 5.96 -2.91 -0.02 5.85 16 31 H 0.20 5.93 8.06 -2.91 -0.02 5.90 16 32 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 3.04 8.07 -2.39 -0.02 3.02 16 34 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.12 1.67 7.85 -2.39 -0.02 1.65 16 36 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 1.89 7.82 -2.39 -0.02 1.88 16 38 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -71.47 338.67 1.89 -69.58 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -0.52 Total: 24.55 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.57 Total: 13.53 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -6.09 Total: -121.83 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.09 Total: -31.52 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -71.47 1.89 -69.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117854983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.134 kcal (2) G-P(sol) polarization free energy of solvation -71.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds