Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37820 * 119.93840 * 2 1 4 4 C 1.39708 * 119.87718 * 180.25224 * 3 2 1 5 5 C 1.47589 * 120.12482 * 179.76676 * 4 3 2 6 6 O 1.21492 * 119.99835 * 174.78910 * 5 4 3 7 7 O 1.34731 * 120.00014 * 354.79623 * 5 4 3 8 8 C 1.45203 * 116.99619 * 184.88721 * 7 5 4 9 9 C 1.52999 * 109.46810 * 183.71642 * 8 7 5 10 10 C 1.50706 * 115.55063 * 306.32337 * 9 8 7 11 11 H 1.07995 * 120.00260 * 144.82332 * 10 9 8 12 12 C 1.37882 * 119.99766 * 324.82437 * 10 9 8 13 13 N 1.31516 * 119.99961 * 344.99625 * 12 10 9 14 14 Si 1.86801 * 119.99993 * 164.99545 * 12 10 9 15 15 H 1.48498 * 109.46857 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47227 * 119.99992 * 14 12 10 17 17 H 1.48501 * 109.46838 * 240.00107 * 14 12 10 18 18 C 1.53004 * 117.49977 * 160.65512 * 9 8 7 19 19 C 1.53000 * 117.50425 * 91.99258 * 9 8 7 20 20 C 1.39709 * 119.74834 * 359.75180 * 4 3 2 21 21 C 1.37819 * 119.87712 * 359.97438 * 20 4 3 22 22 C 1.50696 * 119.93731 * 180.02562 * 21 20 4 23 23 C 1.38665 * 120.12467 * 0.02562 * 21 20 4 24 24 F 1.35100 * 119.87686 * 179.97438 * 23 21 20 25 25 H 1.08995 * 109.47115 * 270.25330 * 1 2 3 26 26 H 1.09004 * 109.47379 * 30.25311 * 1 2 3 27 27 H 1.09002 * 109.47380 * 150.25284 * 1 2 3 28 28 H 1.08008 * 120.06034 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47416 * 303.71232 * 8 7 5 30 30 H 1.09001 * 109.47212 * 63.71523 * 8 7 5 31 31 H 0.97000 * 119.99642 * 185.03601 * 13 12 10 32 32 H 1.08994 * 117.49770 * 359.97438 * 18 9 8 33 33 H 1.09001 * 117.49377 * 145.02062 * 18 9 8 34 34 H 1.08996 * 117.50092 * 214.98293 * 19 9 8 35 35 H 1.09000 * 117.49247 * 359.97438 * 19 9 8 36 36 H 1.07999 * 120.05815 * 180.02562 * 20 4 3 37 37 H 1.08993 * 109.47475 * 269.98143 * 22 21 20 38 38 H 1.09005 * 109.47085 * 29.98081 * 22 21 20 39 39 H 1.09003 * 109.47040 * 149.97806 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1943 0.0000 4 6 3.5919 1.1928 -0.0053 5 6 4.3339 2.4686 -0.0106 6 8 5.5455 2.4670 0.0804 7 8 3.6678 3.6349 -0.1160 8 6 4.4666 4.8427 -0.2244 9 6 3.5449 6.0638 -0.2411 10 6 2.4532 6.0401 -1.2798 11 1 1.4878 6.4703 -1.0584 12 6 2.6872 5.4690 -2.5128 13 7 3.9190 5.2139 -2.8963 14 14 1.2543 5.0575 -3.6385 15 1 -0.0196 5.4395 -2.9779 16 1 1.3955 5.8062 -4.9132 17 1 1.2481 3.5993 -3.9189 18 6 4.1632 7.4204 0.1030 19 6 3.2295 6.7293 1.1000 20 6 4.2838 -0.0209 -0.0054 21 6 3.5857 -1.2092 0.0004 22 6 4.3307 -2.5191 0.0009 23 6 2.1991 -1.2016 0.0056 24 9 1.5197 -2.3694 0.0107 25 1 -0.3633 0.0045 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6547 2.1297 0.0004 29 1 5.1423 4.9092 0.6282 30 1 5.0470 4.8129 -1.1466 31 1 4.0891 4.8804 -3.7911 32 1 5.2265 7.4428 0.3417 33 1 3.7801 8.2956 -0.4216 34 1 2.2327 7.1503 1.2309 35 1 3.6784 6.2969 1.9942 36 1 5.3638 -0.0279 -0.0091 37 1 4.5061 -2.8378 -1.0265 38 1 5.2860 -2.3935 0.5105 39 1 3.7388 -3.2735 0.5193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155742004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = -91.045497 kcal Electronic energy + Delta-G solvation = -23257.761951 eV Core-core repulsion = 19659.478994 eV Total energy + Delta-G solvation = -3598.282957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.04935 -40.00910 -38.62308 -36.72429 -35.10429 -33.82880 -32.19629 -31.82721 -27.66684 -26.96129 -26.51426 -25.41169 -23.57655 -21.31091 -21.23427 -19.95626 -19.22261 -17.56263 -17.27473 -16.75909 -16.22122 -15.91978 -15.55322 -15.32843 -14.61420 -14.08760 -13.87789 -13.59368 -13.39156 -13.35495 -13.29780 -13.14120 -13.02081 -12.29971 -12.20967 -12.10895 -11.80344 -11.61651 -11.42549 -11.04045 -10.98963 -10.85205 -10.51945 -10.37057 -10.05825 -9.57967 -9.47781 -9.17329 -8.79644 -8.79198 -8.65858 -8.13451 -6.11167 -4.11396 0.68984 1.16211 2.81614 3.23317 3.33112 3.36313 3.37821 3.80450 4.09866 4.33426 4.54108 4.57882 4.86497 5.02602 5.09456 5.24205 5.28743 5.43820 5.44749 5.54994 5.57802 5.68496 5.76012 5.97336 6.00542 6.03035 6.10909 6.16412 6.23739 6.33967 6.42985 6.58342 6.62415 6.75498 6.78936 6.93821 7.22907 7.33621 7.42411 7.85533 8.30298 8.51978 8.82934 9.47428 10.92292 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.005115 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.696804 B = 5472.351994 C = 6226.003254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.129 4.129 3 C -0.038 4.038 4 C -0.114 4.114 5 C 0.501 3.499 6 O -0.522 6.522 7 O -0.319 6.319 8 C 0.115 3.885 9 C 0.048 3.952 10 C -0.485 4.485 11 H 0.063 0.937 12 C 0.077 3.923 13 N -0.880 5.880 14 Si 0.890 3.110 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.281 1.281 18 C -0.191 4.191 19 C -0.209 4.209 20 C -0.040 4.040 21 C -0.132 4.132 22 C -0.110 4.110 23 C 0.118 3.882 24 F -0.135 7.135 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.154 0.846 29 H 0.031 0.969 30 H 0.111 0.889 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 -12.400 5.421 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.130 4.130 3 C -0.056 4.056 4 C -0.115 4.115 5 C 0.346 3.654 6 O -0.414 6.414 7 O -0.233 6.233 8 C 0.043 3.957 9 C 0.047 3.953 10 C -0.522 4.522 11 H 0.082 0.918 12 C -0.126 4.126 13 N -0.517 5.517 14 Si 0.717 3.283 15 H -0.195 1.195 16 H -0.211 1.211 17 H -0.206 1.206 18 C -0.230 4.230 19 C -0.246 4.246 20 C -0.058 4.058 21 C -0.133 4.133 22 C -0.167 4.167 23 C 0.098 3.902 24 F -0.113 7.113 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.049 0.951 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.163 0.837 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.312 -12.524 5.315 13.801 hybrid contribution -0.606 -0.218 -0.664 0.925 sum -2.918 -12.743 4.652 13.875 Atomic orbital electron populations 1.20736 0.89612 1.03668 1.02961 1.19896 0.97439 0.91419 1.04276 1.21421 0.92909 0.98316 0.92947 1.19355 0.93636 0.91564 1.06963 1.20893 0.85869 0.85283 0.73399 1.90759 1.15119 1.88529 1.47025 1.86541 1.41090 1.14698 1.80974 1.22832 0.92045 0.79370 1.01487 1.18881 0.96402 0.87435 0.92568 1.20419 0.96854 1.37837 0.97047 0.91838 1.24918 0.95521 0.94420 0.97781 1.69834 1.18766 1.44497 1.18592 0.86565 0.82946 0.78473 0.80280 1.19497 1.21088 1.20633 1.22968 0.96168 0.99398 1.04417 1.22969 0.99635 1.07916 0.94108 1.20997 1.00872 0.89294 0.94644 1.19761 0.91654 0.96848 1.05018 1.20698 1.00083 0.92955 1.02935 1.17607 0.89338 0.80947 1.02275 1.91453 1.80043 1.46227 1.93592 0.90652 0.90313 0.91253 0.82795 0.95070 0.87163 0.92698 0.91475 0.89738 0.90275 0.91297 0.83691 0.90733 0.90718 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.83 36.01 0.35 -0.91 16 2 C -0.13 -1.78 5.88 -104.62 -0.62 -2.40 16 3 C -0.04 -0.60 9.26 -39.19 -0.36 -0.96 16 4 C -0.11 -1.98 5.87 -104.98 -0.62 -2.60 16 5 C 0.50 10.62 7.88 34.55 0.27 10.90 16 6 O -0.52 -11.89 16.08 -19.26 -0.31 -12.20 16 7 O -0.32 -7.42 9.13 -40.58 -0.37 -7.79 16 8 C 0.12 2.81 4.66 37.16 0.17 2.98 16 9 C 0.05 1.16 2.10 -155.66 -0.33 0.84 16 10 C -0.48 -12.81 8.75 -34.44 -0.30 -13.11 16 11 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 12 C 0.08 2.04 5.12 -17.82 -0.09 1.95 16 13 N -0.88 -24.11 10.97 55.43 0.61 -23.51 16 14 Si 0.89 20.52 29.57 -169.99 -5.03 15.50 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C -0.19 -4.22 9.96 -26.69 -0.27 -4.49 16 19 C -0.21 -4.44 9.92 -26.69 -0.26 -4.71 16 20 C -0.04 -0.59 9.24 -39.19 -0.36 -0.96 16 21 C -0.13 -1.72 5.88 -104.62 -0.62 -2.33 16 22 C -0.11 -1.08 9.83 36.00 0.35 -0.72 16 23 C 0.12 1.58 7.19 -39.26 -0.28 1.30 16 24 F -0.13 -1.71 15.66 2.25 0.04 -1.68 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.07 0.71 7.63 -51.93 -0.40 0.32 16 28 H 0.15 2.48 7.62 -52.48 -0.40 2.08 16 29 H 0.03 0.72 7.95 -51.93 -0.41 0.30 16 30 H 0.11 2.96 6.12 -51.93 -0.32 2.64 16 31 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.15 2.04 7.66 -52.49 -0.40 1.64 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.07 0.63 7.63 -51.93 -0.40 0.24 16 LS Contribution 339.89 15.07 5.12 5.12 Total: -1.00 -28.77 339.89 -8.14 -36.91 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.25 Total: 2.87 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -2.95 Total: -15.23 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.61 Total: -23.51 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.68 Total: -19.99 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.77 -8.14 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155742004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.139 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds