Wall clock time and date at job start Tue Mar 31 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37820 * 119.93840 * 2 1 4 4 C 1.39708 * 119.87718 * 180.25224 * 3 2 1 5 5 C 1.47589 * 120.12482 * 179.76676 * 4 3 2 6 6 O 1.21492 * 119.99835 * 174.78910 * 5 4 3 7 7 O 1.34731 * 120.00014 * 354.79623 * 5 4 3 8 8 C 1.45203 * 116.99619 * 184.88721 * 7 5 4 9 9 C 1.52999 * 109.46810 * 183.71642 * 8 7 5 10 10 C 1.50706 * 115.55063 * 306.32337 * 9 8 7 11 11 H 1.07995 * 120.00260 * 144.82332 * 10 9 8 12 12 C 1.37882 * 119.99766 * 324.82437 * 10 9 8 13 13 N 1.31516 * 119.99961 * 344.99625 * 12 10 9 14 14 Si 1.86801 * 119.99993 * 164.99545 * 12 10 9 15 15 H 1.48498 * 109.46857 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47227 * 119.99992 * 14 12 10 17 17 H 1.48501 * 109.46838 * 240.00107 * 14 12 10 18 18 C 1.53004 * 117.49977 * 160.65512 * 9 8 7 19 19 C 1.53000 * 117.50425 * 91.99258 * 9 8 7 20 20 C 1.39709 * 119.74834 * 359.75180 * 4 3 2 21 21 C 1.37819 * 119.87712 * 359.97438 * 20 4 3 22 22 C 1.50696 * 119.93731 * 180.02562 * 21 20 4 23 23 C 1.38665 * 120.12467 * 0.02562 * 21 20 4 24 24 F 1.35100 * 119.87686 * 179.97438 * 23 21 20 25 25 H 1.08995 * 109.47115 * 270.25330 * 1 2 3 26 26 H 1.09004 * 109.47379 * 30.25311 * 1 2 3 27 27 H 1.09002 * 109.47380 * 150.25284 * 1 2 3 28 28 H 1.08008 * 120.06034 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47416 * 303.71232 * 8 7 5 30 30 H 1.09001 * 109.47212 * 63.71523 * 8 7 5 31 31 H 0.97000 * 119.99642 * 185.03601 * 13 12 10 32 32 H 1.08994 * 117.49770 * 359.97438 * 18 9 8 33 33 H 1.09001 * 117.49377 * 145.02062 * 18 9 8 34 34 H 1.08996 * 117.50092 * 214.98293 * 19 9 8 35 35 H 1.09000 * 117.49247 * 359.97438 * 19 9 8 36 36 H 1.07999 * 120.05815 * 180.02562 * 20 4 3 37 37 H 1.08993 * 109.47475 * 269.98143 * 22 21 20 38 38 H 1.09005 * 109.47085 * 29.98081 * 22 21 20 39 39 H 1.09003 * 109.47040 * 149.97806 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1943 0.0000 4 6 3.5919 1.1928 -0.0053 5 6 4.3339 2.4686 -0.0106 6 8 5.5455 2.4670 0.0804 7 8 3.6678 3.6349 -0.1160 8 6 4.4666 4.8427 -0.2244 9 6 3.5449 6.0638 -0.2411 10 6 2.4532 6.0401 -1.2798 11 1 1.4878 6.4703 -1.0584 12 6 2.6872 5.4690 -2.5128 13 7 3.9190 5.2139 -2.8963 14 14 1.2543 5.0575 -3.6385 15 1 -0.0196 5.4395 -2.9779 16 1 1.3955 5.8062 -4.9132 17 1 1.2481 3.5993 -3.9189 18 6 4.1632 7.4204 0.1030 19 6 3.2295 6.7293 1.1000 20 6 4.2838 -0.0209 -0.0054 21 6 3.5857 -1.2092 0.0004 22 6 4.3307 -2.5191 0.0009 23 6 2.1991 -1.2016 0.0056 24 9 1.5197 -2.3694 0.0107 25 1 -0.3633 0.0045 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6547 2.1297 0.0004 29 1 5.1423 4.9092 0.6282 30 1 5.0470 4.8129 -1.1466 31 1 4.0891 4.8804 -3.7911 32 1 5.2265 7.4428 0.3417 33 1 3.7801 8.2956 -0.4216 34 1 2.2327 7.1503 1.2309 35 1 3.6784 6.2969 1.9942 36 1 5.3638 -0.0279 -0.0091 37 1 4.5061 -2.8378 -1.0265 38 1 5.2860 -2.3935 0.5105 39 1 3.7388 -3.2735 0.5193 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155742004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:08 Heat of formation + Delta-G solvation = -103.271384 kcal Electronic energy + Delta-G solvation = -23258.292105 eV Core-core repulsion = 19659.478994 eV Total energy + Delta-G solvation = -3598.813111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.10315 -41.53200 -39.98729 -38.50574 -36.86518 -34.85036 -34.18848 -33.02086 -28.84691 -28.30365 -27.79417 -27.36323 -25.00859 -23.00302 -22.32795 -21.43893 -21.12407 -18.77398 -18.69013 -18.50918 -17.56590 -17.31553 -17.10000 -16.89713 -16.49410 -15.64010 -15.13628 -15.00392 -14.59018 -14.43787 -14.29390 -14.21929 -14.14109 -13.94021 -13.76523 -13.53085 -12.96177 -12.94920 -12.86754 -12.79314 -12.56610 -12.30533 -12.13906 -12.09355 -11.77717 -11.44509 -11.28135 -11.11385 -10.65112 -10.05911 -9.88194 -9.82142 -8.10584 -6.16398 -0.56868 0.04454 1.36181 1.39444 1.44258 1.54132 1.80910 2.41542 2.47643 2.98827 3.00988 3.46009 3.53288 3.57601 3.72776 3.99319 4.04204 4.19426 4.31753 4.39428 4.41950 4.57078 4.65176 4.71234 4.73288 4.74032 4.78770 4.91365 4.94961 5.04342 5.05765 5.13215 5.16459 5.19261 5.21333 5.37465 5.51923 5.66463 5.68915 5.81610 6.33648 6.74859 6.86232 7.44398 8.91592 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.005115 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.696804 B = 5472.351994 C = 6226.003254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.126 4.126 3 C -0.047 4.047 4 C -0.138 4.138 5 C 0.496 3.504 6 O -0.547 6.547 7 O -0.330 6.330 8 C 0.125 3.875 9 C 0.009 3.991 10 C -0.497 4.497 11 H 0.058 0.942 12 C 0.035 3.965 13 N -0.907 5.907 14 Si 0.944 3.056 15 H -0.262 1.262 16 H -0.283 1.283 17 H -0.281 1.281 18 C -0.186 4.186 19 C -0.185 4.185 20 C -0.042 4.042 21 C -0.123 4.123 22 C -0.111 4.111 23 C 0.122 3.878 24 F -0.125 7.125 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.260 0.740 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -14.064 5.991 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.065 4.065 4 C -0.139 4.139 5 C 0.343 3.657 6 O -0.441 6.441 7 O -0.245 6.245 8 C 0.051 3.949 9 C 0.009 3.991 10 C -0.534 4.534 11 H 0.076 0.924 12 C -0.166 4.166 13 N -0.545 5.545 14 Si 0.770 3.230 15 H -0.186 1.186 16 H -0.209 1.209 17 H -0.207 1.207 18 C -0.224 4.224 19 C -0.222 4.222 20 C -0.060 4.060 21 C -0.124 4.124 22 C -0.167 4.167 23 C 0.102 3.898 24 F -0.104 7.104 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.162 0.838 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.167 0.833 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.558 -14.187 5.898 15.770 hybrid contribution -0.230 0.232 -0.796 0.860 sum -3.787 -13.955 5.102 15.333 Atomic orbital electron populations 1.20830 0.87601 1.04311 1.04267 1.20117 0.98875 0.90714 1.03011 1.21346 0.92296 0.98937 0.93963 1.19291 0.94276 0.90396 1.09970 1.21594 0.85974 0.85803 0.72299 1.90723 1.16158 1.88809 1.48384 1.86543 1.41378 1.15168 1.81406 1.22551 0.92057 0.80179 1.00086 1.19014 0.97200 0.88480 0.94450 1.20638 0.97157 1.37882 0.97759 0.92356 1.25555 0.97439 0.94422 0.99135 1.69971 1.20310 1.45466 1.18709 0.85714 0.80681 0.77998 0.78630 1.18551 1.20891 1.20670 1.22970 0.97173 0.97916 1.04317 1.22984 0.99952 1.05936 0.93342 1.21078 1.01170 0.89043 0.94705 1.20065 0.91736 0.97509 1.03042 1.20821 1.00556 0.91194 1.04113 1.17678 0.89588 0.81089 1.01413 1.91482 1.79874 1.45629 1.93372 0.88940 0.90239 0.90044 0.83757 0.94474 0.90246 0.93022 0.90184 0.89931 0.89477 0.89497 0.83288 0.89494 0.89315 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.83 71.24 0.70 -1.57 16 2 C -0.13 -3.28 5.88 -19.86 -0.12 -3.40 16 3 C -0.05 -1.49 9.26 22.53 0.21 -1.28 16 4 C -0.14 -4.86 5.87 -20.10 -0.12 -4.98 16 5 C 0.50 21.73 7.88 70.29 0.55 22.28 16 6 O -0.55 -25.75 16.08 19.86 0.32 -25.43 16 7 O -0.33 -15.84 9.13 -56.41 -0.51 -16.36 16 8 C 0.12 6.21 4.66 71.98 0.34 6.55 16 9 C 0.01 0.44 2.10 -52.92 -0.11 0.33 16 10 C -0.50 -26.51 8.75 25.60 0.22 -26.29 16 11 H 0.06 3.08 7.86 -2.91 -0.02 3.06 16 12 C 0.04 1.87 5.12 84.66 0.43 2.31 16 13 N -0.91 -50.96 10.97 21.45 0.24 -50.72 16 14 Si 0.94 42.36 29.57 68.60 2.03 44.39 16 15 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 C -0.19 -8.08 9.96 30.62 0.30 -7.78 16 19 C -0.18 -7.63 9.92 30.62 0.30 -7.33 16 20 C -0.04 -1.22 9.24 22.53 0.21 -1.01 16 21 C -0.12 -2.93 5.88 -19.86 -0.12 -3.05 16 22 C -0.11 -1.83 9.83 71.23 0.70 -1.13 16 23 C 0.12 2.98 7.19 22.48 0.16 3.15 16 24 F -0.13 -2.78 15.66 44.97 0.70 -2.07 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.59 8.08 -2.38 -0.02 1.57 16 27 H 0.08 1.44 7.63 -2.39 -0.02 1.42 16 28 H 0.14 4.76 7.62 -2.91 -0.02 4.74 16 29 H 0.04 1.75 7.95 -2.39 -0.02 1.73 16 30 H 0.08 4.45 6.12 -2.39 -0.01 4.43 16 31 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 32 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.15 4.15 7.66 -2.91 -0.02 4.12 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.25 8.08 -2.38 -0.02 1.23 16 39 H 0.08 1.19 7.63 -2.39 -0.02 1.17 16 Total: -1.00 -62.02 339.89 7.50 -54.52 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.06 Total: 18.87 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.67 Total: -23.20 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.24 Total: -50.72 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.20 Total: -41.79 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.70 Total: -2.07 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -62.02 7.50 -54.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155742004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.749 kcal (2) G-P(sol) polarization free energy of solvation -62.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds