Wall clock time and date at job start Tue Mar 31 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39801 * 120.07811 * 40.34668 * 3 2 1 5 5 C 1.37655 * 119.92687 * 180.02562 * 4 3 2 6 6 C 1.39174 * 120.07382 * 359.97438 * 5 4 3 7 7 N 1.39183 * 119.92615 * 180.02562 * 6 5 4 8 8 C 1.46500 * 120.00428 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46783 * 34.99430 * 8 7 6 10 10 C 1.53000 * 109.47369 * 155.00078 * 8 7 6 11 11 C 1.50700 * 109.46751 * 294.99698 * 10 8 7 12 12 H 1.08001 * 120.00624 * 0.02562 * 11 10 8 13 13 C 1.37882 * 119.99683 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99939 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47176 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47113 * 120.00196 * 15 13 11 18 18 H 1.48504 * 109.47118 * 240.00102 * 15 13 11 19 19 C 1.50703 * 109.47065 * 275.00459 * 8 7 6 20 20 C 1.38235 * 120.00292 * 139.99706 * 19 8 7 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 319.96999 * 19 8 7 25 25 C 1.39180 * 120.15088 * 0.27963 * 6 5 4 26 26 C 1.37659 * 120.07518 * 359.44564 * 25 6 5 27 27 H 1.08001 * 120.03781 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.96526 * 179.97438 * 5 4 3 29 29 H 0.96997 * 119.99845 * 0.02562 * 7 6 5 30 30 H 1.08995 * 109.46916 * 54.99829 * 10 8 7 31 31 H 1.09003 * 109.46852 * 175.00197 * 10 8 7 32 32 H 0.97001 * 119.99717 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 34 34 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 36 36 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 38 38 H 1.07997 * 119.96361 * 179.70297 * 25 6 5 39 39 H 1.07997 * 120.03748 * 180.27898 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.9211 -0.7832 5 6 4.6456 -0.9180 -0.7805 6 6 5.3394 0.0016 0.0005 7 7 6.7313 0.0023 0.0005 8 6 7.4634 0.9692 0.8223 9 1 6.9158 1.1476 1.7478 10 6 8.8508 0.4135 1.1495 11 6 8.7095 -0.8153 2.0104 12 1 7.7283 -1.1652 2.2954 13 6 9.8330 -1.4929 2.4343 14 7 11.0279 -1.0666 2.0877 15 14 9.6579 -3.0164 3.5009 16 1 8.2184 -3.2852 3.7476 17 1 10.2663 -4.1795 2.8064 18 1 10.3498 -2.7960 4.7963 19 6 7.6066 2.2647 0.0659 20 6 7.4635 3.4705 0.7267 21 6 7.5955 4.6587 0.0330 22 6 7.8714 4.6414 -1.3215 23 6 8.0158 3.4357 -1.9820 24 6 7.8816 2.2473 -1.2887 25 6 4.6447 0.9172 0.7855 26 6 3.2681 0.9233 0.7830 27 1 2.7313 -1.6347 -1.3898 28 1 5.1878 -1.6300 -1.3849 29 1 7.2166 -0.6374 -0.5436 30 1 9.3647 0.1520 0.2245 31 1 9.4274 1.1679 1.6848 32 1 11.8183 -1.5436 2.3857 33 1 7.2487 3.4840 1.7851 34 1 7.4833 5.6008 0.5491 35 1 7.9701 5.5698 -1.8645 36 1 8.2310 3.4221 -3.0403 37 1 7.9935 1.3054 -1.8050 38 1 5.1862 1.6263 1.3940 39 1 2.7296 1.6370 1.3889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164312120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:00 Heat of formation + Delta-G solvation = 70.645895 kcal Electronic energy + Delta-G solvation = -21775.590524 eV Core-core repulsion = 18647.381008 eV Total energy + Delta-G solvation = -3128.209516 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77292 -38.78967 -36.67500 -35.56875 -33.10137 -31.83061 -30.86352 -30.62802 -29.40730 -28.16120 -25.07587 -23.01040 -22.59835 -22.17465 -21.98438 -19.88545 -18.63325 -17.15398 -16.88763 -16.26369 -15.66138 -14.98521 -14.69720 -14.49051 -14.31636 -13.87438 -13.67581 -13.44961 -13.36323 -13.30896 -13.07809 -12.69733 -12.43697 -12.31816 -12.20460 -11.96145 -11.46788 -11.24925 -11.04094 -10.89331 -10.82846 -10.73735 -10.45261 -10.01745 -9.67632 -9.27993 -8.90165 -8.65410 -8.54765 -8.33386 -7.14216 -6.17150 -4.21188 1.22394 1.57698 1.64476 1.67796 2.87420 3.21309 3.22014 3.30745 3.34434 3.76029 4.12455 4.15571 4.23213 4.33426 4.97024 5.03180 5.14415 5.15099 5.20062 5.24051 5.39239 5.46611 5.66708 5.74239 5.76236 5.80428 5.91042 6.10902 6.21248 6.27369 6.33701 6.40532 6.47631 6.57987 6.71545 6.74115 6.83899 6.94825 7.26085 7.30509 7.38559 7.70551 7.74775 7.79505 8.09334 8.15409 8.85202 9.44919 10.93288 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.005675 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.774486 B = 4932.703794 C = 7233.620183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.273 3.727 3 C -0.125 4.125 4 C -0.016 4.016 5 C -0.211 4.211 6 C 0.268 3.732 7 N -0.699 5.699 8 C 0.183 3.817 9 H 0.083 0.917 10 C 0.024 3.976 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.080 4.080 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.101 4.101 25 C -0.205 4.205 26 C -0.016 4.016 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.406 0.594 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 6.787 -6.365 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.040 4.040 3 C -0.132 4.132 4 C -0.038 4.038 5 C -0.234 4.234 6 C 0.156 3.844 7 N -0.320 5.320 8 C 0.078 3.922 9 H 0.101 0.899 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.081 4.081 20 C -0.134 4.134 21 C -0.140 4.140 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.120 4.120 25 C -0.228 4.228 26 C -0.037 4.037 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.242 0.758 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.402 6.878 -6.210 12.509 hybrid contribution 0.839 -1.067 0.404 1.417 sum -7.563 5.811 -5.806 11.166 Atomic orbital electron populations 1.81195 1.12382 1.09666 1.10304 1.25848 0.92737 0.92762 0.92643 1.15674 0.83799 1.04865 1.08856 1.20732 0.93390 0.94996 0.94679 1.20467 0.93685 1.03209 1.05997 1.18180 0.84554 0.91270 0.90360 1.45028 1.01793 1.36952 1.48220 1.20352 0.96905 0.83928 0.90971 0.89914 1.19382 0.87944 0.96450 0.97578 1.21159 0.92819 1.10418 1.31611 0.92163 1.24989 0.95301 0.97639 0.96170 1.69965 0.97585 1.40047 1.45402 0.86547 0.78320 0.82926 0.80313 1.19629 1.21021 1.20984 1.20627 0.97329 0.95763 0.94411 1.21008 1.00635 0.91939 0.99783 1.21040 1.00637 0.97784 0.94511 1.21026 1.01578 0.97609 0.94841 1.21081 1.00772 0.92723 0.99552 1.20908 0.99096 0.97851 0.94101 1.20602 0.93538 1.03505 1.05191 1.20788 0.93479 0.94963 0.94490 0.85820 0.85434 0.75840 0.95742 0.94744 0.92858 0.86178 0.86571 0.86802 0.86692 0.86484 0.85168 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.16 18.54 41.84 0.78 -6.39 16 2 C 0.27 3.75 15.33 -22.47 -0.34 3.41 16 3 C -0.13 -1.56 5.74 -106.80 -0.61 -2.17 16 4 C -0.02 -0.19 9.75 -39.21 -0.38 -0.57 16 5 C -0.21 -2.57 9.87 -39.45 -0.39 -2.96 16 6 C 0.27 3.71 6.63 -83.83 -0.56 3.15 16 7 N -0.70 -10.58 4.18 -53.28 -0.22 -10.80 16 8 C 0.18 3.09 1.82 -69.08 -0.13 2.97 16 9 H 0.08 1.41 6.31 -51.93 -0.33 1.08 16 10 C 0.02 0.52 4.49 -27.88 -0.13 0.39 16 11 C -0.52 -12.88 8.84 -34.44 -0.30 -13.18 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 15 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.08 -1.23 4.80 -104.62 -0.50 -1.73 16 20 C -0.12 -1.63 9.67 -39.59 -0.38 -2.01 16 21 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 22 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 24 C -0.10 -1.49 9.32 -39.58 -0.37 -1.86 16 25 C -0.21 -2.73 9.13 -39.44 -0.36 -3.09 16 26 C -0.02 -0.19 9.75 -39.21 -0.38 -0.57 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.41 6.06 8.61 -40.82 -0.35 5.71 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.12 1.54 8.04 -52.49 -0.42 1.12 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.66 7.72 -52.49 -0.41 1.25 16 38 H 0.13 1.71 6.16 -52.49 -0.32 1.38 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 345.10 15.07 5.20 5.20 Total: -1.00 -28.22 345.10 -9.41 -37.63 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.75 Total: 5.75 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -6.13 Total: -22.72 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 1.29 Total: -41.10 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.22 -9.41 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164312120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.272 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds