Wall clock time and date at job start Tue Mar 31 2020 07:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39801 * 120.07811 * 40.34668 * 3 2 1 5 5 C 1.37655 * 119.92687 * 180.02562 * 4 3 2 6 6 C 1.39174 * 120.07382 * 359.97438 * 5 4 3 7 7 N 1.39183 * 119.92615 * 180.02562 * 6 5 4 8 8 C 1.46500 * 120.00428 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.46783 * 34.99430 * 8 7 6 10 10 C 1.53000 * 109.47369 * 155.00078 * 8 7 6 11 11 C 1.50700 * 109.46751 * 294.99698 * 10 8 7 12 12 H 1.08001 * 120.00624 * 0.02562 * 11 10 8 13 13 C 1.37882 * 119.99683 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99939 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47176 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47113 * 120.00196 * 15 13 11 18 18 H 1.48504 * 109.47118 * 240.00102 * 15 13 11 19 19 C 1.50703 * 109.47065 * 275.00459 * 8 7 6 20 20 C 1.38235 * 120.00292 * 139.99706 * 19 8 7 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 319.96999 * 19 8 7 25 25 C 1.39180 * 120.15088 * 0.27963 * 6 5 4 26 26 C 1.37659 * 120.07518 * 359.44564 * 25 6 5 27 27 H 1.08001 * 120.03781 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.96526 * 179.97438 * 5 4 3 29 29 H 0.96997 * 119.99845 * 0.02562 * 7 6 5 30 30 H 1.08995 * 109.46916 * 54.99829 * 10 8 7 31 31 H 1.09003 * 109.46852 * 175.00197 * 10 8 7 32 32 H 0.97001 * 119.99717 * 180.02562 * 14 13 11 33 33 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 34 34 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 36 36 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 38 38 H 1.07997 * 119.96361 * 179.70297 * 25 6 5 39 39 H 1.07997 * 120.03748 * 180.27898 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.9211 -0.7832 5 6 4.6456 -0.9180 -0.7805 6 6 5.3394 0.0016 0.0005 7 7 6.7313 0.0023 0.0005 8 6 7.4634 0.9692 0.8223 9 1 6.9158 1.1476 1.7478 10 6 8.8508 0.4135 1.1495 11 6 8.7095 -0.8153 2.0104 12 1 7.7283 -1.1652 2.2954 13 6 9.8330 -1.4929 2.4343 14 7 11.0279 -1.0666 2.0877 15 14 9.6579 -3.0164 3.5009 16 1 8.2184 -3.2852 3.7476 17 1 10.2663 -4.1795 2.8064 18 1 10.3498 -2.7960 4.7963 19 6 7.6066 2.2647 0.0659 20 6 7.4635 3.4705 0.7267 21 6 7.5955 4.6587 0.0330 22 6 7.8714 4.6414 -1.3215 23 6 8.0158 3.4357 -1.9820 24 6 7.8816 2.2473 -1.2887 25 6 4.6447 0.9172 0.7855 26 6 3.2681 0.9233 0.7830 27 1 2.7313 -1.6347 -1.3898 28 1 5.1878 -1.6300 -1.3849 29 1 7.2166 -0.6374 -0.5436 30 1 9.3647 0.1520 0.2245 31 1 9.4274 1.1679 1.6848 32 1 11.8183 -1.5436 2.3857 33 1 7.2487 3.4840 1.7851 34 1 7.4833 5.6008 0.5491 35 1 7.9701 5.5698 -1.8645 36 1 8.2310 3.4221 -3.0403 37 1 7.9935 1.3054 -1.8050 38 1 5.1862 1.6263 1.3940 39 1 2.7296 1.6370 1.3889 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164312120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:59 Heat of formation + Delta-G solvation = 58.540957 kcal Electronic energy + Delta-G solvation = -21776.115433 eV Core-core repulsion = 18647.381008 eV Total energy + Delta-G solvation = -3128.734426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86737 -39.82359 -37.82818 -36.79489 -34.87338 -33.10272 -31.86090 -31.65485 -30.69468 -29.54158 -26.62042 -24.21173 -23.81070 -23.28306 -23.12988 -21.11063 -19.65937 -18.62440 -18.16314 -17.61803 -16.88994 -16.40015 -16.10821 -15.57986 -15.35422 -14.95774 -14.88187 -14.58878 -14.55709 -14.32185 -14.18131 -14.10406 -13.62778 -13.56674 -13.45799 -13.36313 -12.88174 -12.85125 -12.52475 -12.39840 -12.08816 -11.86672 -11.75543 -11.47403 -11.33019 -10.78120 -10.56266 -9.86785 -9.68975 -9.46694 -8.25956 -8.17157 -6.26283 0.19105 0.56661 0.62232 0.63586 1.40390 1.44315 1.54375 1.78328 2.14751 2.42411 2.59604 3.05226 3.13810 3.16309 3.19122 3.98172 4.03841 4.10987 4.14387 4.27514 4.39229 4.45601 4.51871 4.67076 4.69447 4.76959 4.84809 4.89055 5.14396 5.21052 5.26502 5.30510 5.43152 5.49115 5.54275 5.58901 5.68072 5.72115 5.77710 5.83554 5.95432 6.20312 6.25928 6.51244 6.64457 6.88874 6.92111 7.43201 8.93460 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.005675 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.774486 B = 4932.703794 C = 7233.620183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.293 3.707 3 C -0.127 4.127 4 C -0.010 4.010 5 C -0.210 4.210 6 C 0.254 3.746 7 N -0.705 5.705 8 C 0.203 3.797 9 H 0.078 0.922 10 C 0.034 3.966 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.009 3.991 14 N -0.930 5.930 15 Si 0.952 3.048 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.284 1.284 19 C -0.098 4.098 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.117 4.117 25 C -0.215 4.215 26 C -0.011 4.011 27 H 0.148 0.852 28 H 0.143 0.857 29 H 0.404 0.596 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.261 0.739 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 7.238 -6.897 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.020 4.020 3 C -0.134 4.134 4 C -0.031 4.031 5 C -0.232 4.232 6 C 0.144 3.856 7 N -0.327 5.327 8 C 0.097 3.903 9 H 0.096 0.904 10 C -0.003 4.003 11 C -0.559 4.559 12 H 0.079 0.921 13 C -0.189 4.189 14 N -0.570 5.570 15 Si 0.778 3.222 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.211 1.211 19 C -0.099 4.099 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.238 4.238 26 C -0.032 4.032 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.240 0.760 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.715 7.328 -6.745 13.914 hybrid contribution 1.209 -1.146 0.529 1.748 sum -8.507 6.182 -6.216 12.216 Atomic orbital electron populations 1.81222 1.13376 1.10858 1.11526 1.25913 0.92690 0.91736 0.91621 1.15766 0.83149 1.05272 1.09199 1.20974 0.93103 0.94831 0.94178 1.20652 0.94019 1.02928 1.05641 1.18387 0.83822 0.92159 0.91224 1.44831 1.02410 1.37003 1.48416 1.19842 0.93872 0.84935 0.91649 0.90396 1.19144 0.90655 0.94908 0.95635 1.21493 0.92580 1.10855 1.30961 0.92077 1.25758 0.95143 1.00457 0.97590 1.70083 0.98282 1.41555 1.47090 0.85588 0.78402 0.79654 0.78520 1.18900 1.20839 1.21051 1.20511 0.99205 0.95358 0.94837 1.21211 1.00953 0.92213 1.00338 1.21382 0.99603 0.98222 0.94905 1.21428 1.00055 0.98512 0.94911 1.21384 1.00185 0.92415 1.00706 1.21017 0.99832 0.98629 0.94053 1.20666 0.94056 1.03640 1.05434 1.20947 0.93022 0.95011 0.94235 0.83436 0.83941 0.76038 0.97889 0.97768 0.92972 0.85595 0.83947 0.83855 0.84562 0.86848 0.85426 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.68 18.54 19.00 0.35 -14.33 16 2 C 0.29 7.48 15.33 88.33 1.35 8.84 16 3 C -0.13 -2.89 5.74 -21.28 -0.12 -3.01 16 4 C -0.01 -0.20 9.75 22.51 0.22 0.02 16 5 C -0.21 -4.74 9.87 22.36 0.22 -4.52 16 6 C 0.25 6.82 6.63 38.43 0.25 7.08 16 7 N -0.70 -21.48 4.18 -322.47 -1.35 -22.83 16 8 C 0.20 7.01 1.82 44.25 0.08 7.09 16 9 H 0.08 2.72 6.31 -2.39 -0.02 2.71 16 10 C 0.03 1.55 4.49 29.85 0.13 1.69 16 11 C -0.52 -26.18 8.84 25.60 0.23 -25.96 16 12 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 13 C 0.01 0.46 5.46 84.66 0.46 0.92 16 14 N -0.93 -52.75 13.29 21.45 0.28 -52.46 16 15 Si 0.95 41.88 29.54 68.60 2.03 43.90 16 16 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 C -0.10 -3.04 4.80 -19.87 -0.10 -3.13 16 20 C -0.13 -3.57 9.67 22.27 0.22 -3.36 16 21 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 22 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 23 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 24 C -0.12 -3.42 9.32 22.27 0.21 -3.22 16 25 C -0.22 -5.50 9.13 22.36 0.20 -5.29 16 26 C -0.01 -0.24 9.75 22.51 0.22 -0.02 16 27 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.40 12.30 8.61 -92.71 -0.80 11.50 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.13 3.22 8.04 -2.91 -0.02 3.19 16 34 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.11 3.28 7.72 -2.91 -0.02 3.26 16 38 H 0.13 3.30 6.16 -2.91 -0.02 3.28 16 39 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -60.92 345.10 5.84 -55.08 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.27 Total: 21.84 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 4.25 Total: -31.21 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -0.71 Total: -89.62 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -60.92 5.84 -55.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164312120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.625 kcal (2) G-P(sol) polarization free energy of solvation -60.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds