Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47076 * 2 1 4 4 C 1.50703 * 109.46961 * 240.00291 * 2 1 3 5 5 O 1.20829 * 119.99634 * 247.30939 * 4 2 1 6 6 O 1.34225 * 120.00455 * 67.31314 * 4 2 1 7 7 C 1.45195 * 117.00263 * 184.40631 * 6 4 2 8 8 C 1.53005 * 109.47028 * 175.17860 * 7 6 4 9 9 C 1.50692 * 115.55458 * 65.18772 * 8 7 6 10 10 H 1.07999 * 119.99825 * 266.47121 * 9 8 7 11 11 C 1.37878 * 120.00203 * 86.46686 * 9 8 7 12 12 N 1.31518 * 120.00140 * 177.99785 * 11 9 8 13 13 Si 1.86793 * 119.99945 * 358.00776 * 11 9 8 14 14 H 1.48500 * 109.47480 * 90.76680 * 13 11 9 15 15 H 1.48501 * 109.47434 * 210.76675 * 13 11 9 16 16 H 1.48501 * 109.47280 * 330.76346 * 13 11 9 17 17 C 1.53004 * 117.49697 * 279.51545 * 8 7 6 18 18 C 1.53005 * 117.49616 * 210.85934 * 8 7 6 19 19 C 1.50697 * 109.47415 * 119.99980 * 2 1 3 20 20 C 1.38271 * 119.98380 * 60.02199 * 19 2 1 21 21 C 1.38228 * 120.04812 * 179.97438 * 20 19 2 22 22 C 1.38222 * 120.02523 * 0.02562 * 21 20 19 23 23 C 1.38431 * 119.97474 * 359.69962 * 22 21 20 24 24 F 1.35102 * 120.02823 * 180.32308 * 23 22 21 25 25 C 1.38172 * 119.98854 * 239.99852 * 19 2 1 26 26 H 1.09003 * 109.47048 * 294.80834 * 1 2 3 27 27 H 1.09001 * 109.47336 * 54.80835 * 1 2 3 28 28 H 1.09004 * 109.47249 * 174.80856 * 1 2 3 29 29 H 1.09007 * 109.46827 * 295.16958 * 7 6 4 30 30 H 1.09002 * 109.47707 * 55.17597 * 7 6 4 31 31 H 0.96998 * 119.99754 * 179.97438 * 12 11 9 32 32 H 1.09009 * 117.49548 * 0.02562 * 17 8 7 33 33 H 1.08996 * 117.50016 * 145.02163 * 17 8 7 34 34 H 1.09007 * 117.49803 * 214.97890 * 18 8 7 35 35 H 1.09003 * 117.49681 * 359.97016 * 18 8 7 36 36 H 1.07998 * 119.97666 * 0.02562 * 20 19 2 37 37 H 1.08003 * 119.98593 * 180.02562 * 21 20 19 38 38 H 1.07997 * 120.00635 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.01099 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6142 -1.7640 -1.1246 6 8 1.8333 -0.1727 -2.4442 7 6 2.2560 -0.9575 -3.5903 8 6 1.8425 -0.2427 -4.8783 9 6 2.5145 1.0822 -5.1309 10 1 2.0408 1.9979 -4.8091 11 6 3.7340 1.1255 -5.7728 12 7 4.3019 2.2839 -6.0283 13 14 4.5795 -0.4611 -6.2796 14 1 4.1649 -0.8245 -7.6585 15 1 6.0519 -0.2723 -6.2390 16 1 4.1940 -1.5481 -5.3441 17 6 0.3913 -0.3978 -5.3377 18 6 1.5144 -1.1116 -6.0943 19 6 2.0324 -0.7104 1.2304 20 6 1.6985 -2.0343 1.4487 21 6 2.1591 -2.6874 2.5766 22 6 2.9535 -2.0172 3.4878 23 6 3.2930 -0.6934 3.2674 24 9 4.0748 -0.0393 4.1541 25 6 2.8268 -0.0386 2.1397 26 1 -0.3633 0.4312 0.9329 27 1 -0.3634 0.5923 -0.8398 28 1 -0.3634 -1.0235 -0.0930 29 1 3.3397 -1.0739 -3.5712 30 1 1.7843 -1.9395 -3.5522 31 1 5.1600 2.3143 -6.4795 32 1 -0.2689 -1.0087 -4.7219 33 1 -0.0772 0.4585 -5.8229 34 1 1.7843 -0.7246 -7.0770 35 1 1.5935 -2.1923 -5.9767 36 1 1.0782 -2.5588 0.7370 37 1 1.8981 -3.7216 2.7459 38 1 3.3135 -2.5279 4.3687 39 1 3.0873 0.9955 1.9690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174743642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -100.804785 kcal Electronic energy + Delta-G solvation = -22910.176645 eV Core-core repulsion = 19311.470494 eV Total energy + Delta-G solvation = -3598.706151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.91346 -41.77295 -40.06034 -38.75822 -37.02470 -35.29739 -34.26117 -31.71479 -30.52263 -29.00763 -27.43879 -25.84219 -23.76973 -23.62435 -23.25877 -21.22224 -21.01096 -18.79418 -18.61471 -18.19416 -17.58282 -17.21247 -17.18737 -16.88467 -16.61790 -16.52974 -15.55787 -15.43079 -14.86108 -14.67396 -14.54883 -14.38383 -14.06586 -13.91006 -13.64335 -13.15678 -13.07397 -12.99160 -12.78037 -12.71011 -12.42323 -12.26009 -12.04084 -11.88568 -11.68232 -11.67469 -11.31436 -10.92871 -10.66108 -10.38599 -10.00005 -9.65923 -8.31569 -6.38294 0.10298 0.21019 1.18737 1.31391 1.35433 1.44629 1.72577 2.33086 2.62502 3.01951 3.12790 3.19005 3.44386 3.68393 3.86939 3.97696 4.05612 4.10197 4.17583 4.21953 4.23365 4.30695 4.38595 4.42310 4.58955 4.78055 4.82664 4.83814 4.90385 5.02104 5.06384 5.10716 5.19838 5.22297 5.34315 5.45894 5.47913 5.60576 5.65566 5.90028 6.29225 6.69171 6.78610 7.30534 8.84182 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.003880 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.915541 B = 7215.398778 C = 7629.250677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 H 0.125 0.875 4 C 0.456 3.544 5 O -0.536 6.536 6 O -0.343 6.343 7 C 0.113 3.887 8 C -0.039 4.039 9 C -0.480 4.480 10 H 0.035 0.965 11 C 0.022 3.978 12 N -0.947 5.947 13 Si 0.931 3.069 14 H -0.258 1.258 15 H -0.298 1.298 16 H -0.242 1.242 17 C -0.151 4.151 18 C -0.181 4.181 19 C -0.058 4.058 20 C -0.101 4.101 21 C -0.091 4.091 22 C -0.149 4.149 23 C 0.076 3.924 24 F -0.148 7.148 25 C -0.152 4.152 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.266 0.734 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 -10.552 16.924 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 H 0.143 0.857 4 C 0.300 3.700 5 O -0.426 6.426 6 O -0.259 6.259 7 C 0.040 3.960 8 C -0.040 4.040 9 C -0.518 4.518 10 H 0.054 0.946 11 C -0.176 4.176 12 N -0.586 5.586 13 Si 0.756 3.244 14 H -0.183 1.183 15 H -0.225 1.225 16 H -0.165 1.165 17 C -0.188 4.188 18 C -0.218 4.218 19 C -0.058 4.058 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.168 4.168 23 C 0.057 3.943 24 F -0.127 7.127 25 C -0.171 4.171 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.148 0.852 37 H 0.180 0.820 38 H 0.175 0.825 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.991 -10.741 16.854 21.524 hybrid contribution 1.311 0.091 -0.500 1.406 sum -6.680 -10.650 16.355 20.628 Atomic orbital electron populations 1.21786 0.88601 1.03794 1.04884 1.20042 1.00212 1.00396 0.85391 0.85723 1.24201 0.75945 0.83954 0.85852 1.90611 1.39957 1.24398 1.87634 1.86565 1.75078 1.49283 1.14930 1.22814 0.98306 0.92344 0.82564 1.19216 0.98272 0.95789 0.90729 1.20364 1.03999 0.90893 1.36514 0.94636 1.25792 0.97537 0.99033 0.95197 1.70030 1.18210 1.26918 1.43469 0.86009 0.76770 0.81205 0.80436 1.18309 1.22542 1.16519 1.22871 0.90784 1.02056 1.03074 1.23084 1.04701 0.98028 0.96035 1.19216 0.97617 0.94850 0.94149 1.21226 0.99722 0.93542 0.97461 1.21311 0.95795 1.01210 0.92528 1.21458 1.00426 0.92583 1.02299 1.17818 0.95118 0.92081 0.89321 1.91477 1.72543 1.81456 1.67197 1.21150 0.99718 1.01891 0.94310 0.88547 0.90616 0.91385 0.93801 0.91102 0.92528 0.87504 0.89723 0.89804 0.87629 0.85196 0.82033 0.82524 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.91 71.98 0.64 -1.86 16 2 C -0.04 -1.03 3.00 -12.29 -0.04 -1.06 16 3 H 0.12 2.89 7.87 -2.39 -0.02 2.87 16 4 C 0.46 15.61 7.11 71.24 0.51 16.12 16 5 O -0.54 -20.34 14.59 21.95 0.32 -20.02 16 6 O -0.34 -13.73 10.16 -51.37 -0.52 -14.25 16 7 C 0.11 4.75 4.92 71.98 0.35 5.10 16 8 C -0.04 -1.75 1.06 -52.93 -0.06 -1.80 16 9 C -0.48 -26.97 9.36 25.60 0.24 -26.73 16 10 H 0.04 2.25 8.06 -2.91 -0.02 2.22 16 11 C 0.02 1.27 5.47 84.65 0.46 1.73 16 12 N -0.95 -58.89 13.96 21.45 0.30 -58.60 16 13 Si 0.93 44.00 24.92 68.60 1.71 45.71 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.24 -10.58 5.71 99.48 0.57 -10.01 16 17 C -0.15 -5.53 9.96 30.62 0.30 -5.23 16 18 C -0.18 -6.90 7.66 30.62 0.23 -6.67 16 19 C -0.06 -1.38 4.47 -19.87 -0.09 -1.47 16 20 C -0.10 -2.20 7.91 22.28 0.18 -2.03 16 21 C -0.09 -1.60 10.04 22.26 0.22 -1.38 16 22 C -0.15 -2.76 10.03 22.31 0.22 -2.53 16 23 C 0.08 1.71 7.30 22.38 0.16 1.88 16 24 F -0.15 -3.55 17.27 44.97 0.78 -2.78 16 25 C -0.15 -3.53 9.65 22.31 0.22 -3.32 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.19 7.58 -2.39 -0.02 1.18 16 29 H 0.04 2.01 6.53 -2.38 -0.02 2.00 16 30 H 0.07 2.59 8.04 -2.39 -0.02 2.57 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 33 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.08 3.37 7.35 -2.38 -0.02 3.36 16 35 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.13 2.73 7.41 -2.91 -0.02 2.71 16 37 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 39 H 0.14 3.00 7.94 -2.91 -0.02 2.97 16 Total: -1.00 -69.52 333.59 7.06 -62.46 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.91 Total: 16.75 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 3.56 Total: -29.26 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.30 Total: -58.60 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.20 Total: -34.28 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.71 Total: 45.71 kcal Total: -69.52 7.06 -62.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174743642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.347 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds