Wall clock time and date at job start Tue Mar 31 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47176 * 274.65421 * 3 2 1 5 5 H 1.48501 * 109.47269 * 34.65607 * 3 2 1 6 6 H 1.48503 * 109.46663 * 154.65843 * 3 2 1 7 7 C 1.39857 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99878 * 162.12751 * 7 2 1 9 9 C 1.41135 * 120.00410 * 342.11845 * 7 2 1 10 10 C 1.40887 * 120.15494 * 155.08585 * 9 7 2 11 11 C 1.36344 * 119.83651 * 180.02562 * 10 9 7 12 12 C 1.39559 * 120.15832 * 0.25536 * 11 10 9 13 13 N 1.38861 * 119.83938 * 179.72212 * 12 11 10 14 14 C 1.46505 * 119.99831 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46991 * 180.02562 * 14 13 12 16 16 C 1.37791 * 120.11197 * 259.72657 * 15 14 13 17 17 C 1.38793 * 120.66773 * 179.76731 * 16 15 14 18 18 C 1.36654 * 120.52696 * 0.51423 * 17 16 15 19 19 C 1.39597 * 119.76443 * 359.74512 * 18 17 16 20 20 C 1.46489 * 134.03424 * 180.02562 * 19 18 17 21 21 C 1.34234 * 106.99725 * 179.97438 * 20 19 18 22 22 N 1.36828 * 109.93948 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.06261 * 180.02562 * 22 21 20 24 24 C 1.37690 * 109.87683 * 0.02562 * 22 21 20 25 25 C 1.39567 * 120.31713 * 359.48896 * 12 11 10 26 26 C 1.36338 * 120.16306 * 0.50951 * 25 12 11 27 27 H 0.96997 * 120.00042 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.08395 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.91639 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00000 * 0.02562 * 13 12 11 31 31 H 1.08999 * 109.47219 * 300.00398 * 14 13 12 32 32 H 1.09003 * 109.47025 * 60.00647 * 14 13 12 33 33 H 1.08002 * 119.66837 * 0.02562 * 16 15 14 34 34 H 1.08000 * 119.73217 * 180.23511 * 17 16 15 35 35 H 1.07995 * 120.12382 * 179.76980 * 18 17 16 36 36 H 1.07999 * 126.50314 * 0.02562 * 20 19 18 37 37 H 1.08006 * 125.02973 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.91795 * 180.23652 * 25 12 11 39 39 H 1.07993 * 120.08597 * 179.72069 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5864 1.4137 0.5993 7 6 2.0083 -1.2112 -0.0005 8 1 3.0493 -1.2337 -0.2876 9 6 1.3538 -2.4042 0.3742 10 6 1.8228 -3.6466 -0.0962 11 6 1.1852 -4.7949 0.2695 12 6 0.0674 -4.7412 1.1033 13 7 -0.5804 -5.9145 1.4670 14 6 -1.7538 -5.8622 2.3426 15 6 -2.2640 -7.2597 2.5827 16 6 -3.3498 -7.7300 1.8766 17 6 -3.8264 -9.0167 2.0850 18 6 -3.2325 -9.8367 3.0029 19 6 -2.1345 -9.3789 3.7332 20 6 -1.2798 -9.9706 4.7653 21 6 -0.3701 -9.0424 5.1011 22 7 -0.5718 -7.9047 4.3681 23 1 -0.0389 -7.0970 4.4349 24 6 -1.6439 -8.0772 3.5215 25 6 -0.3996 -3.5144 1.5774 26 6 0.2280 -2.3581 1.2200 27 1 -0.4850 0.8400 0.0004 28 1 2.6852 -3.6893 -0.7449 29 1 1.5434 -5.7480 -0.0907 30 1 -0.2555 -6.7686 1.1418 31 1 -1.4771 -5.4082 3.2942 32 1 -2.5342 -5.2664 1.8691 33 1 -3.8323 -7.0923 1.1506 34 1 -4.6761 -9.3712 1.5205 35 1 -3.6110 -10.8355 3.1624 36 1 -1.3648 -10.9653 5.1773 37 1 0.4067 -9.1743 5.8399 38 1 -1.2630 -3.4807 2.2254 39 1 -0.1372 -1.4091 1.5839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230852235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:24 Heat of formation + Delta-G solvation = 78.368357 kcal Electronic energy + Delta-G solvation = -21422.923607 eV Core-core repulsion = 18295.048962 eV Total energy + Delta-G solvation = -3127.874645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29654 -38.05705 -37.09316 -35.16969 -33.30639 -31.77239 -29.79851 -29.47553 -28.94281 -28.36118 -25.79061 -23.87579 -22.16753 -21.81451 -21.07774 -20.38077 -19.84418 -17.85260 -17.21824 -16.45286 -15.96232 -15.34074 -15.05823 -14.77568 -14.53015 -14.29877 -13.83155 -13.49231 -13.22709 -12.86887 -12.66309 -12.63873 -12.48128 -11.97009 -11.76157 -11.67459 -11.58024 -11.18883 -11.03715 -10.88818 -10.70114 -10.47909 -9.77924 -9.66647 -9.30229 -9.24135 -8.55375 -8.24976 -7.74910 -7.51570 -6.65536 -6.40964 -4.04864 1.04197 1.62673 2.64061 2.90058 3.08080 3.13444 3.13936 3.18779 3.33593 3.81219 4.04433 4.51499 4.65914 4.74893 4.75633 4.98488 5.05780 5.24017 5.33423 5.53889 5.66591 5.77111 5.81601 5.87926 6.00473 6.07503 6.25717 6.30307 6.53001 6.57001 6.67012 6.71730 6.90180 6.92262 7.13106 7.18634 7.34392 7.47899 7.53276 7.67277 7.82337 8.13633 8.27311 8.47210 8.68280 8.78351 9.04706 9.13611 10.36177 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031481 B = 0.002974 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.222082 B = 9411.692606 C = 9722.343446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.075 3.925 10 C -0.186 4.186 11 C -0.157 4.157 12 C 0.090 3.910 13 N -0.757 5.757 14 C 0.180 3.820 15 C -0.103 4.103 16 C -0.085 4.085 17 C -0.148 4.148 18 C -0.073 4.073 19 C -0.115 4.115 20 C -0.211 4.211 21 C 0.051 3.949 22 N -0.589 5.589 23 H 0.419 0.581 24 C 0.113 3.887 25 C -0.164 4.164 26 C -0.124 4.124 27 H 0.276 0.724 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.384 0.616 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.087 0.913 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.188 -15.233 8.337 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.090 0.910 9 C 0.072 3.928 10 C -0.207 4.207 11 C -0.180 4.180 12 C -0.007 4.007 13 N -0.394 5.394 14 C 0.055 3.945 15 C -0.106 4.106 16 C -0.105 4.105 17 C -0.167 4.167 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.236 4.236 21 C -0.076 4.076 22 N -0.192 5.192 23 H 0.257 0.743 24 C 0.004 3.996 25 C -0.186 4.186 26 C -0.144 4.144 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.105 0.895 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.419 -14.849 8.473 17.935 hybrid contribution 0.679 0.833 -0.144 1.084 sum -4.740 -14.016 8.329 16.979 Atomic orbital electron populations 1.69858 1.07362 1.28614 1.37599 1.25795 0.94653 1.00890 0.92712 0.86414 0.80732 0.81336 0.78835 1.19835 1.20280 1.18684 1.19363 0.97890 0.91371 1.41212 0.90964 1.17493 0.92417 0.91979 0.90875 1.20549 1.02768 0.92612 1.04744 1.19804 0.97899 0.97047 1.03208 1.17351 0.95658 0.85577 1.02084 1.43924 1.32278 1.06002 1.57158 1.19805 0.89124 0.91393 0.94158 1.19070 0.97807 0.96033 0.97706 1.20819 0.95443 0.95854 0.98400 1.20614 1.01455 0.94380 1.00229 1.20240 0.94331 0.99304 0.95336 1.19219 0.98577 0.93816 1.00357 1.21636 0.99089 1.00229 1.02684 1.21834 1.01158 0.86256 0.98306 1.41899 1.27843 1.15284 1.34130 0.74345 1.18067 0.90887 0.95536 0.95078 1.20086 1.01575 0.91950 1.04995 1.20922 0.98223 0.96387 0.98912 0.91324 0.89066 0.89682 0.78300 0.93505 0.92321 0.85572 0.86084 0.86316 0.83863 0.81451 0.89475 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 10.98 55.54 0.61 -20.84 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.22 29.60 -169.99 -5.03 14.19 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.47 -12.71 9.03 -37.88 -0.34 -13.05 16 8 H 0.07 1.90 7.91 -52.48 -0.41 1.48 16 9 C 0.08 2.04 5.57 -106.79 -0.59 1.44 16 10 C -0.19 -4.63 9.74 -39.26 -0.38 -5.02 16 11 C -0.16 -3.55 9.82 -39.77 -0.39 -3.94 16 12 C 0.09 1.95 6.67 -83.69 -0.56 1.39 16 13 N -0.76 -13.26 5.69 -59.67 -0.34 -13.60 16 14 C 0.18 2.77 5.03 -5.19 -0.03 2.74 16 15 C -0.10 -1.42 5.26 -104.47 -0.55 -1.97 16 16 C -0.09 -1.07 9.64 -39.54 -0.38 -1.45 16 17 C -0.15 -1.65 9.97 -39.95 -0.40 -2.05 16 18 C -0.07 -0.83 10.05 -39.65 -0.40 -1.23 16 19 C -0.12 -1.45 6.37 -105.14 -0.67 -2.12 16 20 C -0.21 -2.24 11.08 -37.67 -0.42 -2.65 16 21 C 0.05 0.50 11.81 -16.73 -0.20 0.30 16 22 N -0.59 -6.79 6.07 -10.65 -0.06 -6.86 16 23 H 0.42 4.51 8.96 -40.82 -0.37 4.15 16 24 C 0.11 1.50 6.98 -83.99 -0.59 0.92 16 25 C -0.16 -3.82 9.23 -39.77 -0.37 -4.18 16 26 C -0.12 -3.25 8.63 -39.26 -0.34 -3.59 16 27 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 28 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.38 6.41 8.46 -40.82 -0.35 6.06 16 31 H 0.05 0.73 7.92 -51.93 -0.41 0.31 16 32 H 0.06 0.93 7.79 -51.93 -0.40 0.53 16 33 H 0.13 1.45 8.03 -52.49 -0.42 1.02 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.09 1.85 6.68 -52.48 -0.35 1.50 16 39 H 0.12 3.19 6.18 -52.49 -0.32 2.87 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -29.44 332.25 -11.22 -40.66 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.07 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -6.69 Total: -32.62 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.21 Total: -41.30 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.44 -11.22 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230852235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.025 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds