Wall clock time and date at job start Tue Mar 31 2020 06:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47176 * 274.65421 * 3 2 1 5 5 H 1.48501 * 109.47269 * 34.65607 * 3 2 1 6 6 H 1.48503 * 109.46663 * 154.65843 * 3 2 1 7 7 C 1.39857 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99878 * 162.12751 * 7 2 1 9 9 C 1.41135 * 120.00410 * 342.11845 * 7 2 1 10 10 C 1.40887 * 120.15494 * 155.08585 * 9 7 2 11 11 C 1.36344 * 119.83651 * 180.02562 * 10 9 7 12 12 C 1.39559 * 120.15832 * 0.25536 * 11 10 9 13 13 N 1.38861 * 119.83938 * 179.72212 * 12 11 10 14 14 C 1.46505 * 119.99831 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46991 * 180.02562 * 14 13 12 16 16 C 1.37791 * 120.11197 * 259.72657 * 15 14 13 17 17 C 1.38793 * 120.66773 * 179.76731 * 16 15 14 18 18 C 1.36654 * 120.52696 * 0.51423 * 17 16 15 19 19 C 1.39597 * 119.76443 * 359.74512 * 18 17 16 20 20 C 1.46489 * 134.03424 * 180.02562 * 19 18 17 21 21 C 1.34234 * 106.99725 * 179.97438 * 20 19 18 22 22 N 1.36828 * 109.93948 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.06261 * 180.02562 * 22 21 20 24 24 C 1.37690 * 109.87683 * 0.02562 * 22 21 20 25 25 C 1.39567 * 120.31713 * 359.48896 * 12 11 10 26 26 C 1.36338 * 120.16306 * 0.50951 * 25 12 11 27 27 H 0.96997 * 120.00042 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.08395 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.91639 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00000 * 0.02562 * 13 12 11 31 31 H 1.08999 * 109.47219 * 300.00398 * 14 13 12 32 32 H 1.09003 * 109.47025 * 60.00647 * 14 13 12 33 33 H 1.08002 * 119.66837 * 0.02562 * 16 15 14 34 34 H 1.08000 * 119.73217 * 180.23511 * 17 16 15 35 35 H 1.07995 * 120.12382 * 179.76980 * 18 17 16 36 36 H 1.07999 * 126.50314 * 0.02562 * 20 19 18 37 37 H 1.08006 * 125.02973 * 180.02562 * 21 20 19 38 38 H 1.08003 * 119.91795 * 180.23652 * 25 12 11 39 39 H 1.07993 * 120.08597 * 179.72069 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3921 2.1033 -1.3955 5 1 1.4931 2.6223 0.7961 6 1 3.5864 1.4137 0.5993 7 6 2.0083 -1.2112 -0.0005 8 1 3.0493 -1.2337 -0.2876 9 6 1.3538 -2.4042 0.3742 10 6 1.8228 -3.6466 -0.0962 11 6 1.1852 -4.7949 0.2695 12 6 0.0674 -4.7412 1.1033 13 7 -0.5804 -5.9145 1.4670 14 6 -1.7538 -5.8622 2.3426 15 6 -2.2640 -7.2597 2.5827 16 6 -3.3498 -7.7300 1.8766 17 6 -3.8264 -9.0167 2.0850 18 6 -3.2325 -9.8367 3.0029 19 6 -2.1345 -9.3789 3.7332 20 6 -1.2798 -9.9706 4.7653 21 6 -0.3701 -9.0424 5.1011 22 7 -0.5718 -7.9047 4.3681 23 1 -0.0389 -7.0970 4.4349 24 6 -1.6439 -8.0772 3.5215 25 6 -0.3996 -3.5144 1.5774 26 6 0.2280 -2.3581 1.2200 27 1 -0.4850 0.8400 0.0004 28 1 2.6852 -3.6893 -0.7449 29 1 1.5434 -5.7480 -0.0907 30 1 -0.2555 -6.7686 1.1418 31 1 -1.4771 -5.4082 3.2942 32 1 -2.5342 -5.2664 1.8691 33 1 -3.8323 -7.0923 1.1506 34 1 -4.6761 -9.3712 1.5205 35 1 -3.6110 -10.8355 3.1624 36 1 -1.3648 -10.9653 5.1773 37 1 0.4067 -9.1743 5.8399 38 1 -1.2630 -3.4807 2.2254 39 1 -0.1372 -1.4091 1.5839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230852235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:23 Heat of formation + Delta-G solvation = 63.403748 kcal Electronic energy + Delta-G solvation = -21423.572521 eV Core-core repulsion = 18295.048962 eV Total energy + Delta-G solvation = -3128.523559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15912 -39.79769 -38.11199 -36.69181 -34.99588 -33.04005 -31.37557 -30.92678 -30.04337 -29.64772 -27.23434 -25.56797 -23.36762 -22.75187 -22.60055 -21.82725 -21.08742 -19.16643 -18.79117 -17.90721 -16.98795 -16.84006 -16.51231 -16.02780 -15.64274 -15.52345 -15.25497 -14.67178 -14.52923 -14.41853 -14.11451 -13.86539 -13.71455 -13.50198 -13.37618 -13.07806 -12.74402 -12.68639 -12.48133 -12.41918 -12.25653 -11.72409 -11.60072 -11.22354 -11.08389 -10.59995 -10.33306 -9.43059 -9.13636 -8.61263 -8.56258 -8.19958 -6.02527 0.13584 0.72320 1.08998 1.16329 1.39652 1.51941 1.58120 1.83165 2.26685 2.31471 2.77333 2.83316 3.18336 3.69526 3.82583 3.93867 4.06507 4.20894 4.36568 4.41885 4.42303 4.47943 4.62182 4.71533 4.81328 4.97923 5.01498 5.10899 5.14070 5.14788 5.25918 5.43604 5.61618 5.65784 5.67808 5.77449 5.84225 5.87295 5.93641 6.17181 6.26307 6.37114 6.64488 6.66052 6.83850 7.07083 7.09064 7.26389 8.47185 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031481 B = 0.002974 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.222082 B = 9411.692606 C = 9722.343446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.037 3.963 10 C -0.195 4.195 11 C -0.164 4.164 12 C 0.112 3.888 13 N -0.744 5.744 14 C 0.184 3.816 15 C -0.120 4.120 16 C -0.093 4.093 17 C -0.151 4.151 18 C -0.074 4.074 19 C -0.135 4.135 20 C -0.223 4.223 21 C 0.055 3.945 22 N -0.594 5.594 23 H 0.420 0.580 24 C 0.091 3.909 25 C -0.173 4.173 26 C -0.142 4.142 27 H 0.282 0.718 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.392 0.608 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.203 0.797 38 H 0.104 0.896 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -17.087 9.109 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.034 3.966 10 C -0.215 4.215 11 C -0.186 4.186 12 C 0.013 3.987 13 N -0.379 5.379 14 C 0.060 3.940 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.170 4.170 18 C -0.093 4.093 19 C -0.140 4.140 20 C -0.248 4.248 21 C -0.071 4.071 22 N -0.197 5.197 23 H 0.257 0.743 24 C -0.017 4.017 25 C -0.195 4.195 26 C -0.163 4.163 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.226 0.774 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.220 0.780 38 H 0.122 0.878 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.656 -16.753 9.256 19.958 hybrid contribution 0.662 1.163 -0.325 1.377 sum -4.995 -15.590 8.931 18.648 Atomic orbital electron populations 1.69921 1.08754 1.29810 1.38433 1.26614 0.95452 1.04108 0.91829 0.85295 0.79177 0.76665 0.79121 1.19038 1.19284 1.18500 1.19592 0.98002 0.92755 1.43365 0.91406 1.17808 0.93544 0.92997 0.92207 1.20747 1.03123 0.92833 1.04784 1.20070 0.97892 0.97537 1.03125 1.17426 0.94808 0.86415 1.00065 1.43950 1.32340 1.04919 1.56705 1.19802 0.87906 0.92955 0.93334 1.18919 0.98979 0.95166 0.99196 1.21017 0.95202 0.96711 0.98323 1.20898 1.02043 0.93715 1.00339 1.20606 0.93703 1.00373 0.94601 1.19657 0.99307 0.93861 1.01180 1.21994 0.98893 1.01451 1.02415 1.22465 1.01469 0.85191 0.98024 1.42037 1.27537 1.15933 1.34168 0.74274 1.18248 0.91757 0.96083 0.95635 1.20218 1.02033 0.91812 1.05427 1.20849 0.98919 0.96643 0.99842 0.90741 0.88539 0.86848 0.77385 0.93626 0.92881 0.85079 0.83637 0.83906 0.81659 0.78016 0.87838 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.10 10.98 21.81 0.24 -45.86 16 2 C 0.03 1.69 5.13 85.22 0.44 2.13 16 3 Si 0.98 40.17 29.60 68.60 2.03 42.20 16 4 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.51 -28.54 9.03 23.37 0.21 -28.33 16 8 H 0.07 3.71 7.91 -2.91 -0.02 3.69 16 9 C 0.04 2.08 5.57 -21.27 -0.12 1.97 16 10 C -0.19 -9.80 9.74 22.48 0.22 -9.58 16 11 C -0.16 -7.25 9.82 22.15 0.22 -7.04 16 12 C 0.11 4.76 6.67 38.67 0.26 5.02 16 13 N -0.74 -25.05 5.69 -342.70 -1.95 -27.00 16 14 C 0.18 5.51 5.03 85.63 0.43 5.94 16 15 C -0.12 -3.15 5.26 -19.77 -0.10 -3.25 16 16 C -0.09 -2.19 9.64 22.30 0.21 -1.98 16 17 C -0.15 -3.03 9.97 22.03 0.22 -2.81 16 18 C -0.07 -1.50 10.05 22.23 0.22 -1.28 16 19 C -0.14 -3.14 6.37 -20.20 -0.13 -3.27 16 20 C -0.22 -4.14 11.08 23.51 0.26 -3.88 16 21 C 0.05 0.92 11.81 83.00 0.98 1.90 16 22 N -0.59 -12.73 6.07 -187.61 -1.14 -13.87 16 23 H 0.42 8.52 8.96 -92.71 -0.83 7.69 16 24 C 0.09 2.31 6.98 39.03 0.27 2.58 16 25 C -0.17 -8.10 9.23 22.15 0.20 -7.90 16 26 C -0.14 -7.70 8.63 22.47 0.19 -7.51 16 27 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 28 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.39 12.33 8.46 -92.71 -0.78 11.54 16 31 H 0.05 1.38 7.92 -2.39 -0.02 1.36 16 32 H 0.05 1.66 7.79 -2.39 -0.02 1.64 16 33 H 0.13 2.85 8.03 -2.91 -0.02 2.83 16 34 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.10 4.41 6.68 -2.91 -0.02 4.39 16 39 H 0.10 5.62 6.18 -2.91 -0.02 5.61 16 Total: -1.00 -64.91 332.25 2.65 -62.26 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.53 Total: 39.57 kcal Atomic # 6 Polarization: -61.29 SS G_CDS: 3.99 Total: -57.30 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -2.85 Total: -86.73 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -64.91 2.65 -62.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230852235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.662 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds