Wall clock time and date at job start Tue Mar 31 2020 07:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46884 * 202.85623 * 3 2 1 5 5 N 1.46907 * 109.47264 * 181.41993 * 4 3 2 6 6 C 1.46902 * 110.99574 * 61.91568 * 5 4 3 7 7 C 1.50706 * 109.47109 * 66.05043 * 6 5 4 8 8 H 1.08000 * 119.99865 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99734 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00237 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99681 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47513 * 89.99387 * 11 9 7 13 13 H 1.48505 * 109.47037 * 209.99463 * 11 9 7 14 14 H 1.48496 * 109.47243 * 329.99304 * 11 9 7 15 15 C 1.46901 * 110.99976 * 297.96578 * 5 4 3 16 16 C 1.52995 * 109.46854 * 288.34507 * 15 5 4 17 17 H 1.09003 * 109.47143 * 58.60413 * 16 15 5 18 18 O 1.42894 * 109.47394 * 298.60233 * 16 15 5 19 19 C 1.50700 * 109.46977 * 178.59888 * 16 15 5 20 20 C 1.38223 * 120.00877 * 94.72973 * 19 16 15 21 21 C 1.38227 * 120.02480 * 179.71968 * 20 19 16 22 22 C 1.38267 * 120.04824 * 0.55415 * 21 20 19 23 23 C 1.38171 * 120.02647 * 359.72080 * 22 21 20 24 24 C 1.38432 * 120.01738 * 274.99945 * 19 16 15 25 25 F 1.35095 * 120.02708 * 0.03047 * 24 19 16 26 26 H 1.08995 * 109.47144 * 82.85715 * 3 2 1 27 27 H 1.08999 * 109.47528 * 322.85362 * 3 2 1 28 28 H 1.08999 * 109.47334 * 61.42356 * 4 3 2 29 29 H 1.09006 * 109.47420 * 301.42068 * 4 3 2 30 30 H 1.08998 * 109.46835 * 186.04518 * 6 5 4 31 31 H 1.09004 * 109.47368 * 306.04801 * 6 5 4 32 32 H 0.96996 * 119.99959 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.46875 * 48.34711 * 15 5 4 34 34 H 1.08994 * 109.46960 * 168.34594 * 15 5 4 35 35 H 0.96694 * 114.00193 * 300.00096 * 18 16 15 36 36 H 1.08003 * 119.98661 * 0.02562 * 20 19 16 37 37 H 1.07998 * 119.97357 * 180.27425 * 21 20 19 38 38 H 1.08005 * 119.98522 * 179.74346 * 22 21 20 39 39 H 1.08005 * 120.01017 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3301 0.5603 5 7 4.5860 1.3443 0.5288 6 6 5.0839 1.2356 -0.8490 7 6 4.6968 2.4700 -1.6220 8 1 4.1365 3.2565 -1.1382 9 6 5.0570 2.5949 -2.9470 10 7 5.7389 1.6370 -3.5362 11 14 4.5778 4.1253 -3.9049 12 1 5.6484 5.1462 -3.7750 13 1 4.3974 3.7766 -5.3371 14 1 3.3065 4.6699 -3.3641 15 6 5.1410 0.2793 1.3747 16 6 4.9280 0.6348 2.8475 17 1 3.8627 0.7619 3.0402 18 8 5.6149 1.8513 3.1481 19 6 5.4666 -0.4737 3.7147 20 6 6.7517 -0.3956 4.2178 21 6 7.2439 -1.4095 5.0181 22 6 6.4557 -2.5081 5.3069 23 6 5.1729 -2.5910 4.8005 24 6 4.6765 -1.5732 4.0034 25 9 3.4225 -1.6535 3.5073 26 1 2.9713 -0.1270 -1.0196 27 1 2.9717 -0.8183 0.6205 28 1 2.7749 1.4461 1.5886 29 1 2.7329 2.1509 -0.0454 30 1 6.1697 1.1405 -0.8364 31 1 4.6477 0.3572 -1.3248 32 1 5.9926 1.7250 -4.4682 33 1 4.6377 -0.6614 1.1515 34 1 6.2078 0.1766 1.1763 35 1 6.5695 1.8110 2.9995 36 1 7.3696 0.4602 3.9895 37 1 8.2466 -1.3455 5.4143 38 1 6.8429 -3.3017 5.9289 39 1 4.5572 -3.4492 5.0266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265743199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:53 Heat of formation + Delta-G solvation = -56.651124 kcal Electronic energy + Delta-G solvation = -23216.853164 eV Core-core repulsion = 19652.354411 eV Total energy + Delta-G solvation = -3564.498754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.88479 -40.57894 -39.28439 -37.72173 -36.98993 -34.65839 -32.71879 -31.80694 -31.44080 -29.90007 -27.60010 -25.80714 -24.50087 -23.55318 -22.26946 -21.27732 -18.95448 -18.86938 -18.26505 -17.61883 -17.58289 -16.86539 -16.61741 -16.35112 -16.18223 -15.86392 -15.42375 -15.26774 -14.96187 -14.80880 -14.60073 -14.22195 -14.03277 -13.58184 -13.49829 -13.29105 -13.09193 -12.94911 -12.84624 -12.65764 -12.58438 -12.46239 -12.15889 -11.99784 -11.86509 -11.51443 -11.37968 -10.88990 -10.52667 -9.87305 -9.57034 -8.89774 -8.13577 -6.19802 0.21231 0.30362 1.44370 1.46286 1.55302 1.71140 1.74945 2.44637 2.65982 2.92908 3.21185 3.26524 3.33415 3.56688 3.82868 3.88205 4.01477 4.08525 4.17985 4.21536 4.31969 4.43404 4.46907 4.49783 4.73063 4.87437 4.90920 4.97303 5.13831 5.14871 5.26979 5.36919 5.40248 5.45926 5.51983 5.73832 5.99121 6.12800 6.32691 6.53872 6.65351 6.90784 6.96135 7.49073 8.96321 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.004492 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.876191 B = 6232.104770 C = 7305.769087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.244 3.756 3 C -0.062 4.062 4 C 0.073 3.927 5 N -0.521 5.521 6 C 0.201 3.799 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.011 3.989 10 N -0.929 5.929 11 Si 0.951 3.049 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.270 1.270 15 C 0.026 3.974 16 C 0.164 3.836 17 H 0.095 0.905 18 O -0.551 6.551 19 C -0.159 4.159 20 C -0.090 4.090 21 C -0.124 4.124 22 C -0.091 4.091 23 C -0.160 4.160 24 C 0.078 3.922 25 F -0.150 7.150 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.010 0.990 31 H -0.009 1.009 32 H 0.262 0.738 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.383 0.617 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.302 -9.006 18.056 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.073 4.073 3 C -0.103 4.103 4 C -0.057 4.057 5 N -0.243 5.243 6 C 0.076 3.924 7 C -0.554 4.554 8 H 0.078 0.922 9 C -0.187 4.187 10 N -0.570 5.570 11 Si 0.777 3.223 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.195 1.195 15 C -0.103 4.103 16 C 0.104 3.896 17 H 0.113 0.887 18 O -0.358 6.358 19 C -0.161 4.161 20 C -0.108 4.108 21 C -0.142 4.142 22 C -0.109 4.109 23 C -0.178 4.178 24 C 0.059 3.941 25 F -0.129 7.129 26 H 0.127 0.873 27 H 0.141 0.859 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.008 0.992 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.179 0.821 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.214 -8.386 18.200 20.295 hybrid contribution 0.157 -0.288 -1.635 1.668 sum 3.371 -8.673 16.565 18.999 Atomic orbital electron populations 1.81147 1.14052 1.10688 1.11020 1.29312 0.95197 0.91455 0.91307 1.20146 0.80777 1.03391 1.06022 1.22024 0.88454 0.94357 1.00850 1.62172 1.05584 1.44907 1.11616 1.19530 0.94338 0.95220 0.83348 1.21455 1.34409 1.04368 0.95120 0.92248 1.25641 0.95402 0.98941 0.98745 1.70033 1.40075 1.34341 1.12533 0.85655 0.78767 0.80205 0.77633 1.20152 1.21281 1.19512 1.22849 1.00928 0.93400 0.93108 1.20486 0.96581 0.82025 0.90494 0.88703 1.86610 1.25381 1.34342 1.89443 1.20693 0.96544 0.96411 1.02464 1.21132 0.93307 1.00059 0.96334 1.21585 1.01550 0.93285 0.97781 1.21433 0.92300 0.98835 0.98330 1.21426 0.98419 0.98815 0.99166 1.17832 0.80121 0.96997 0.99123 1.91465 1.38783 1.96411 1.86236 0.87312 0.85890 0.89997 0.91069 0.97212 0.99156 0.92919 0.93380 0.90514 0.76728 0.83358 0.82395 0.82063 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.27 18.54 20.01 0.37 -17.90 16 2 C 0.24 8.12 15.43 89.44 1.38 9.50 16 3 C -0.06 -1.89 5.07 28.79 0.15 -1.74 16 4 C 0.07 2.49 4.97 86.30 0.43 2.92 16 5 N -0.52 -19.23 4.55 -900.78 -4.10 -23.33 16 6 C 0.20 9.30 4.51 85.56 0.39 9.69 16 7 C -0.51 -26.86 8.49 25.60 0.22 -26.65 16 8 H 0.06 3.11 7.11 -2.91 -0.02 3.09 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -52.52 13.29 21.45 0.28 -52.23 16 11 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 15 C 0.03 0.75 4.46 86.30 0.39 1.14 16 16 C 0.16 4.29 2.98 29.85 0.09 4.38 16 17 H 0.10 2.69 6.31 -2.39 -0.02 2.67 16 18 O -0.55 -14.91 12.88 -148.98 -1.92 -16.83 16 19 C -0.16 -3.53 5.07 -19.82 -0.10 -3.63 16 20 C -0.09 -1.54 9.30 22.26 0.21 -1.33 16 21 C -0.12 -1.60 10.04 22.27 0.22 -1.38 16 22 C -0.09 -1.15 10.04 22.26 0.22 -0.93 16 23 C -0.16 -2.70 10.03 22.31 0.22 -2.48 16 24 C 0.08 1.76 7.24 22.37 0.16 1.92 16 25 F -0.15 -3.84 16.57 44.97 0.75 -3.09 16 26 H 0.11 3.73 6.25 -2.39 -0.01 3.71 16 27 H 0.12 3.20 6.29 -2.39 -0.02 3.18 16 28 H 0.08 2.50 6.59 -2.39 -0.02 2.48 16 29 H 0.07 2.75 6.81 -2.38 -0.02 2.73 16 30 H 0.01 0.49 7.86 -2.39 -0.02 0.47 16 31 H -0.01 -0.44 6.03 -2.38 -0.01 -0.45 16 32 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 33 H 0.05 1.35 5.87 -2.39 -0.01 1.34 16 34 H 0.08 2.26 7.82 -2.39 -0.02 2.24 16 35 H 0.38 7.81 7.32 -74.06 -0.54 7.27 16 36 H 0.15 1.97 6.41 -2.91 -0.02 1.95 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -65.10 332.94 2.40 -62.71 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.56 Total: 13.08 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.43 Total: -7.53 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -3.44 Total: -93.46 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -1.92 Total: -16.83 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.75 Total: -3.09 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.10 2.40 -62.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265743199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.056 kcal (2) G-P(sol) polarization free energy of solvation -65.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds