Wall clock time and date at job start Tue Mar 31 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35235 * 126.07530 * 2 1 4 4 C 1.40404 * 107.86982 * 180.24048 * 3 2 1 5 5 N 1.40158 * 125.97387 * 179.76157 * 4 3 2 6 6 C 1.34780 * 120.00111 * 0.02562 * 5 4 3 7 7 O 1.21295 * 119.99779 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00146 * 180.02562 * 6 5 4 9 9 H 1.08998 * 110.21326 * 41.92935 * 8 6 5 10 10 C 1.54476 * 110.24472 * 279.99977 * 8 6 5 11 11 C 1.54628 * 101.76385 * 215.58497 * 10 8 6 12 12 C 1.51273 * 104.19528 * 24.79734 * 11 10 8 13 13 O 1.21288 * 124.94131 * 163.74900 * 12 11 10 14 14 N 1.34421 * 110.11780 * 343.74851 * 12 11 10 15 15 N 1.31223 * 108.05547 * 359.75509 * 4 3 2 16 16 N 1.34972 * 126.06687 * 179.82108 * 2 1 3 17 17 C 1.46506 * 125.97326 * 0.02562 * 16 2 1 18 18 C 1.50696 * 109.46871 * 269.70968 * 17 16 2 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 H 1.08997 * 109.47446 * 270.17936 * 1 2 3 27 27 H 1.09004 * 109.46938 * 30.17779 * 1 2 3 28 28 H 1.08999 * 109.47546 * 150.17257 * 1 2 3 29 29 H 1.08001 * 126.06178 * 359.97278 * 3 2 1 30 30 H 0.97002 * 120.00247 * 180.02562 * 5 4 3 31 31 H 1.09000 * 110.97400 * 333.70333 * 10 8 6 32 32 H 1.09004 * 110.96691 * 97.46492 * 10 8 6 33 33 H 1.08997 * 110.48848 * 143.48195 * 11 10 8 34 34 H 1.09003 * 110.48687 * 265.98877 * 11 10 8 35 35 H 0.96999 * 124.34774 * 179.56751 * 14 12 11 36 36 H 1.09005 * 109.46943 * 149.71288 * 17 16 2 37 37 H 1.09002 * 109.47064 * 29.71551 * 17 16 2 38 38 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3033 1.0930 0.0000 4 6 3.6370 0.6544 -0.0056 5 7 4.7735 1.4747 -0.0122 6 6 4.6368 2.8155 -0.0130 7 8 3.5303 3.3123 -0.0076 8 6 5.8587 3.6975 -0.0206 9 1 6.6058 3.3001 -0.7077 10 6 6.4472 3.8079 1.4034 11 6 6.9513 5.2696 1.4237 12 6 6.0978 5.9708 0.3902 13 8 5.9761 7.1734 0.2899 14 7 5.4940 5.0672 -0.4009 15 7 3.6336 -0.6578 -0.0035 16 7 2.3016 -1.0910 0.0034 17 6 1.8498 -2.4847 0.0072 18 6 1.7013 -2.9606 1.4293 19 1 1.9209 -2.2918 2.2484 20 6 1.2849 -4.2500 1.6848 21 7 1.1548 -4.6653 2.9259 22 14 0.9057 -5.4070 0.2681 23 1 -0.5269 -5.2826 -0.1027 24 1 1.7519 -5.0534 -0.8999 25 1 1.1906 -6.8048 0.6808 26 1 -0.3634 0.0032 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3634 -0.8915 -0.5111 29 1 1.9720 2.1210 -0.0004 30 1 5.6584 1.0774 -0.0161 31 1 5.6759 3.6509 2.1575 32 1 7.2722 3.1087 1.5399 33 1 6.7991 5.7120 2.4081 34 1 8.0043 5.3138 1.1454 35 1 4.8940 5.2917 -1.1293 36 1 2.5822 -3.1054 -0.5090 37 1 0.8889 -2.5566 -0.5023 38 1 0.8615 -5.5723 3.1056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271141559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:49 Heat of formation + Delta-G solvation = -15.393671 kcal Electronic energy + Delta-G solvation = -22629.713463 eV Core-core repulsion = 19086.923729 eV Total energy + Delta-G solvation = -3542.789735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.44827 -41.67307 -40.15894 -37.34832 -36.38245 -35.25642 -33.30667 -32.82492 -32.24830 -29.93447 -28.59716 -27.91910 -24.87030 -23.84840 -22.51642 -21.54289 -21.29798 -20.81843 -19.23540 -18.68696 -18.30102 -17.62411 -17.12740 -16.85421 -16.58263 -16.16254 -15.89351 -15.53181 -15.09932 -14.88197 -14.70676 -14.45009 -14.15269 -13.92798 -13.82166 -13.65712 -13.58129 -13.27312 -13.01184 -12.77737 -12.53437 -12.29615 -12.07437 -11.84042 -11.59891 -11.45324 -11.13926 -11.00942 -10.89037 -10.22771 -9.62606 -9.14454 -8.40284 -6.51455 0.81341 1.16941 1.31622 1.35854 1.38829 1.48109 1.55400 2.10853 2.14625 2.27038 2.44068 2.92313 3.25089 3.32360 3.61033 3.83610 4.00515 4.07197 4.09383 4.37229 4.49226 4.51591 4.72948 4.77326 4.83175 4.85136 4.95071 4.99074 5.05061 5.08851 5.20453 5.23732 5.66262 5.84625 5.92054 5.98161 6.21467 6.34998 6.52297 6.88023 7.05405 7.12606 7.14379 8.76333 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.003033 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.873434 B = 9229.484505 C = 9537.338354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.300 4.300 4 C 0.274 3.726 5 N -0.613 5.613 6 C 0.511 3.489 7 O -0.543 6.543 8 C 0.130 3.870 9 H 0.159 0.841 10 C -0.118 4.118 11 C -0.143 4.143 12 C 0.513 3.487 13 O -0.585 6.585 14 N -0.711 5.711 15 N -0.349 5.349 16 N -0.342 5.342 17 C 0.241 3.759 18 C -0.550 4.550 19 H 0.024 0.976 20 C 0.022 3.978 21 N -0.938 5.938 22 Si 0.950 3.050 23 H -0.252 1.252 24 H -0.243 1.243 25 H -0.279 1.279 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.164 0.836 30 H 0.431 0.569 31 H 0.074 0.926 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.413 0.587 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 13.081 -8.284 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.331 4.331 4 C 0.020 3.980 5 N -0.263 5.263 6 C 0.297 3.703 7 O -0.418 6.418 8 C 0.021 3.979 9 H 0.176 0.824 10 C -0.156 4.156 11 C -0.183 4.183 12 C 0.302 3.698 13 O -0.465 6.465 14 N -0.365 5.365 15 N -0.179 5.179 16 N -0.125 5.125 17 C 0.121 3.879 18 C -0.588 4.588 19 H 0.043 0.957 20 C -0.178 4.178 21 N -0.576 5.576 22 Si 0.771 3.229 23 H -0.176 1.176 24 H -0.166 1.166 25 H -0.204 1.204 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.181 0.819 30 H 0.270 0.730 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.130 0.870 34 H 0.160 0.840 35 H 0.251 0.749 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.914 12.744 -8.125 18.642 hybrid contribution -0.849 -0.218 -0.206 0.900 sum 10.065 12.526 -8.331 18.100 Atomic orbital electron populations 1.20509 0.85410 1.04700 1.03779 1.21735 0.96650 0.86525 0.99208 1.21433 0.90290 0.99828 1.21531 1.19304 0.88824 0.89228 1.00662 1.42480 1.07134 1.04754 1.71971 1.21595 0.92246 0.81378 0.75049 1.90689 1.28476 1.74263 1.48363 1.21809 0.92769 0.81362 1.01999 0.82380 1.22804 1.02920 0.97884 0.92026 1.22423 1.01902 0.94608 0.99352 1.21612 0.79880 0.85725 0.82612 1.90746 1.66330 1.15959 1.73489 1.46116 1.48926 1.06207 1.35212 1.77178 0.99544 1.09948 1.31255 1.48440 1.01991 1.07043 1.54980 1.19777 0.96471 0.74603 0.97016 1.21244 1.47745 0.98674 0.91164 0.95736 1.25827 0.93756 0.99256 0.98961 1.70034 1.46965 1.19096 1.21497 0.85693 0.80433 0.77722 0.79078 1.17619 1.16607 1.20424 0.90480 0.87518 0.90319 0.81858 0.72970 0.90691 0.83500 0.87034 0.84005 0.74853 0.93072 0.91119 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 10.11 71.23 0.72 -1.94 16 2 C 0.09 3.48 6.92 41.38 0.29 3.77 16 3 C -0.30 -11.37 9.52 22.10 0.21 -11.16 16 4 C 0.27 9.92 8.11 133.32 1.08 11.00 16 5 N -0.61 -14.47 5.45 -307.50 -1.68 -16.14 16 6 C 0.51 11.00 7.00 87.66 0.61 11.61 16 7 O -0.54 -16.58 13.67 -3.08 -0.04 -16.62 16 8 C 0.13 1.45 3.93 44.70 0.18 1.62 16 9 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 10 C -0.12 -0.88 6.67 31.65 0.21 -0.67 16 11 C -0.14 -1.30 6.86 30.58 0.21 -1.09 16 12 C 0.51 9.99 8.43 87.89 0.74 10.73 16 13 O -0.58 -17.33 18.03 -3.05 -0.06 -17.38 16 14 N -0.71 -11.82 5.46 -442.99 -2.42 -14.23 16 15 N -0.35 -14.83 12.59 -54.45 -0.69 -15.51 16 16 N -0.34 -15.19 3.59 -338.44 -1.22 -16.41 16 17 C 0.24 11.09 5.06 85.63 0.43 11.52 16 18 C -0.55 -30.78 9.94 25.60 0.25 -30.52 16 19 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 20 C 0.02 1.20 5.47 84.66 0.46 1.66 16 21 N -0.94 -56.07 13.96 21.45 0.30 -55.77 16 22 Si 0.95 39.70 27.47 68.60 1.88 41.58 16 23 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 24 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 25 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.08 2.30 7.06 -2.39 -0.02 2.28 16 29 H 0.16 6.06 5.92 -2.91 -0.02 6.04 16 30 H 0.43 6.77 8.82 -92.71 -0.82 5.95 16 31 H 0.07 0.88 7.91 -2.39 -0.02 0.86 16 32 H 0.15 -0.04 8.14 -2.38 -0.02 -0.06 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.41 7.43 8.94 -92.71 -0.83 6.60 16 36 H 0.05 2.33 7.20 -2.38 -0.02 2.31 16 37 H 0.07 2.88 6.46 -2.39 -0.02 2.86 16 38 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -83.91 326.51 0.91 -82.99 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.58 Total: 20.96 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.40 Total: 6.53 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -5.70 Total: -118.07 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.10 Total: -34.00 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.88 Total: 41.58 kcal Total: -83.91 0.91 -82.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271141559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.600 kcal (2) G-P(sol) polarization free energy of solvation -83.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds