Wall clock time and date at job start Tue Mar 31 2020 07:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37876 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00515 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47198 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00065 * 179.97438 * 11 10 9 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 H 1.09004 * 115.55144 * 9.13400 * 15 14 12 17 17 C 1.52996 * 117.49788 * 223.46917 * 15 14 12 18 18 C 1.53005 * 117.50003 * 154.80791 * 15 14 12 19 19 H 1.08995 * 117.50170 * 214.97748 * 18 15 14 20 20 C 1.50703 * 117.49554 * 0.02562 * 18 15 14 21 21 C 1.38272 * 119.98298 * 239.99887 * 20 18 15 22 22 C 1.38225 * 120.04995 * 179.97438 * 21 20 18 23 23 C 1.38218 * 120.02606 * 359.97438 * 22 21 20 24 24 C 1.38442 * 119.97437 * 359.97438 * 23 22 21 25 25 F 1.35098 * 120.02595 * 180.02562 * 24 23 22 26 26 C 1.38172 * 119.98879 * 59.72468 * 20 18 15 27 27 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47827 * 59.99660 * 9 7 2 29 29 H 1.09007 * 109.47098 * 299.99383 * 9 7 2 30 30 H 1.09000 * 109.47211 * 59.99027 * 10 9 7 31 31 H 1.09006 * 109.46815 * 299.99263 * 10 9 7 32 32 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 33 33 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 34 34 H 1.09004 * 117.49811 * 0.02562 * 17 15 14 35 35 H 1.08995 * 117.50167 * 145.01896 * 17 15 14 36 36 H 1.08000 * 119.97291 * 359.97438 * 21 20 18 37 37 H 1.07992 * 119.98290 * 180.02562 * 22 21 20 38 38 H 1.07992 * 120.01272 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.01439 * 359.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.4024 -6.0981 -0.0019 14 7 1.5126 -7.2652 -0.0034 15 6 2.2450 -8.5339 0.0024 16 1 3.3203 -8.4553 0.1633 17 6 1.7496 -9.6399 -0.9316 18 6 1.5321 -9.7588 0.5790 19 1 2.1382 -10.4861 1.1190 20 6 0.1298 -9.5678 1.0970 21 6 -0.1602 -9.8374 2.4218 22 6 -1.4457 -9.6622 2.8985 23 6 -2.4428 -9.2167 2.0514 24 6 -2.1534 -8.9454 0.7250 25 9 -3.1271 -8.5094 -0.1039 26 6 -0.8643 -9.1179 0.2493 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8713 -3.6047 0.8890 31 1 2.8725 -3.6040 -0.8911 32 1 0.5426 -4.9308 -0.0020 33 1 0.5426 -7.2652 -0.0034 34 1 0.8789 -9.4233 -1.5506 35 1 2.4988 -10.2891 -1.3847 36 1 0.6184 -10.1852 3.0846 37 1 -1.6709 -9.8727 3.9335 38 1 -3.4472 -9.0803 2.4239 39 1 -0.6365 -8.9027 -0.7842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273133843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:03 Heat of formation + Delta-G solvation = -34.313865 kcal Electronic energy + Delta-G solvation = -22205.695756 eV Core-core repulsion = 18642.165619 eV Total energy + Delta-G solvation = -3563.530137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.12069 -40.38934 -39.20382 -37.20996 -34.78173 -33.12850 -32.53582 -31.02529 -30.70625 -29.30028 -24.85668 -24.43036 -23.04946 -22.26113 -21.13719 -20.74333 -20.45841 -18.21346 -17.78402 -16.59158 -16.39757 -16.38672 -15.96231 -15.79871 -15.12266 -14.91589 -14.49730 -14.45444 -14.23637 -13.61945 -13.37420 -13.33747 -13.15964 -12.75678 -12.36885 -12.26559 -11.76753 -11.60876 -11.30534 -11.17171 -11.02953 -10.82603 -10.60479 -10.31482 -9.98266 -9.56141 -9.29359 -9.23841 -9.05589 -8.70922 -8.46211 -8.23188 -6.07929 -4.10570 0.81344 0.85155 2.87936 3.11485 3.29607 3.37212 3.42587 3.44040 3.86125 3.91226 4.25499 4.37914 4.39009 4.51642 4.61820 4.68431 4.72707 4.85301 4.98053 5.05723 5.29289 5.42900 5.51200 5.59658 5.73927 5.75122 5.82332 6.00015 6.15763 6.29309 6.40183 6.55269 6.57197 6.77960 6.97854 7.19445 7.57747 7.64377 7.91234 8.25787 8.39452 8.92145 8.97481 9.54220 11.03806 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.003179 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.907037 B = 8806.509395 C = 9803.151630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.702 3.298 13 O -0.595 6.595 14 N -0.725 5.725 15 C 0.129 3.871 16 H 0.146 0.854 17 C -0.189 4.189 18 C -0.138 4.138 19 H 0.126 0.874 20 C -0.015 4.015 21 C -0.124 4.124 22 C -0.084 4.084 23 C -0.161 4.161 24 C 0.107 3.893 25 F -0.137 7.137 26 C -0.170 4.170 27 H 0.261 0.739 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.393 0.607 33 H 0.395 0.605 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -24.080 3.155 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.017 3.983 11 N -0.390 5.390 12 C 0.403 3.597 13 O -0.474 6.474 14 N -0.380 5.380 15 C 0.021 3.979 16 H 0.163 0.837 17 C -0.228 4.228 18 C -0.157 4.157 19 H 0.144 0.856 20 C -0.016 4.016 21 C -0.142 4.142 22 C -0.102 4.102 23 C -0.180 4.180 24 C 0.088 3.912 25 F -0.116 7.116 26 C -0.189 4.189 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.226 0.774 33 H 0.230 0.770 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.855 -23.843 3.119 24.215 hybrid contribution -0.912 0.953 -0.140 1.327 sum -3.767 -22.890 2.980 23.389 Atomic orbital electron populations 1.69969 1.06100 1.26739 1.50515 1.24998 0.94887 0.99419 0.95018 0.86456 0.80185 0.83330 0.77593 1.19551 1.20953 1.20950 1.21087 0.93307 0.90314 1.51149 0.92135 1.19341 0.94272 0.91098 0.97850 1.21620 0.95644 0.80252 1.00738 1.45550 1.09904 1.05303 1.78221 1.15992 0.85616 0.80342 0.77798 1.90882 1.11626 1.86554 1.58327 1.44619 1.09232 1.03754 1.80376 1.21443 0.96893 0.78622 1.00944 0.83691 1.23681 1.04297 1.03149 0.91687 1.21716 0.94121 1.02856 0.97052 0.85627 1.18917 0.93071 0.96313 0.93266 1.21044 0.96989 1.01300 0.94849 1.21025 0.92281 0.97110 0.99740 1.21185 1.01333 1.03250 0.92202 1.17669 0.85616 0.99401 0.88499 1.91529 1.61568 1.87028 1.71469 1.21089 0.91622 1.04717 1.01463 0.92920 0.95944 0.95961 0.92680 0.92657 0.77390 0.76963 0.88141 0.87256 0.85146 0.84831 0.84679 0.84539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 3.06 5.61 -4.04 -0.02 3.03 16 11 N -0.74 -13.44 5.56 -65.22 -0.36 -13.80 16 12 C 0.70 12.52 8.57 -86.92 -0.74 11.78 16 13 O -0.60 -12.71 15.91 5.28 0.08 -12.63 16 14 N -0.73 -9.63 5.33 -58.67 -0.31 -9.94 16 15 C 0.13 1.41 6.38 -67.93 -0.43 0.97 16 16 H 0.15 1.73 7.40 -51.93 -0.38 1.35 16 17 C -0.19 -1.54 9.79 -26.69 -0.26 -1.81 16 18 C -0.14 -1.13 6.05 -91.73 -0.55 -1.68 16 19 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.02 -0.14 5.18 -104.63 -0.54 -0.68 16 21 C -0.12 -1.00 9.74 -39.57 -0.39 -1.38 16 22 C -0.08 -0.64 10.04 -39.59 -0.40 -1.04 16 23 C -0.16 -1.41 10.03 -39.51 -0.40 -1.80 16 24 C 0.11 1.10 7.30 -39.41 -0.29 0.81 16 25 F -0.14 -1.57 17.27 2.25 0.04 -1.54 16 26 C -0.17 -1.62 7.42 -39.51 -0.29 -1.91 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.39 6.33 8.49 -40.82 -0.35 5.98 16 33 H 0.39 4.65 6.17 -40.82 -0.25 4.39 16 34 H 0.10 0.81 6.19 -51.93 -0.32 0.49 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 1.21 5.81 -52.49 -0.31 0.91 16 LS Contribution 337.11 15.07 5.08 5.08 Total: -1.00 -32.70 337.11 -9.58 -42.28 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.96 Total: 6.52 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -4.87 Total: -6.86 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.06 Total: -49.34 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.70 -9.58 -42.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273133843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.969 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds