Wall clock time and date at job start Tue Mar 31 2020 07:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99791 * 2 1 4 4 H 1.48506 * 109.47239 * 239.99821 * 3 2 1 5 5 H 1.48498 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47107 * 120.00447 * 3 2 1 7 7 C 1.37876 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47006 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00036 * 180.02562 * 11 10 9 13 13 O 1.21594 * 120.00017 * 359.97438 * 12 11 10 14 14 N 1.34784 * 120.00092 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99948 * 179.97438 * 14 12 11 16 16 H 1.08999 * 115.56186 * 9.31809 * 15 14 12 17 17 C 1.53069 * 117.51450 * 223.60937 * 15 14 12 18 18 C 1.53000 * 59.98584 * 252.52495 * 17 15 14 19 19 H 1.09002 * 117.49833 * 107.50105 * 18 17 15 20 20 C 1.50697 * 117.50034 * 252.49893 * 18 17 15 21 21 C 1.38270 * 119.98934 * 8.47106 * 20 18 17 22 22 C 1.38226 * 120.05293 * 179.76743 * 21 20 18 23 23 C 1.38213 * 120.02284 * 0.51014 * 22 21 20 24 24 C 1.38436 * 119.97740 * 359.74358 * 23 22 21 25 25 F 1.35101 * 120.02920 * 179.97438 * 24 23 22 26 26 C 1.38174 * 119.98812 * 188.74745 * 20 18 17 27 27 H 0.96998 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99897 * 9 7 2 29 29 H 1.08999 * 109.46923 * 300.00294 * 9 7 2 30 30 H 1.08996 * 109.47085 * 60.00015 * 10 9 7 31 31 H 1.09004 * 109.46802 * 299.99709 * 10 9 7 32 32 H 0.97004 * 119.99678 * 359.97438 * 11 10 9 33 33 H 0.96997 * 119.99307 * 0.02562 * 14 12 11 34 34 H 1.09008 * 117.49334 * 145.04050 * 17 15 14 35 35 H 1.08999 * 117.51639 * 0.02562 * 17 15 14 36 36 H 1.08002 * 119.97349 * 0.02562 * 21 20 18 37 37 H 1.07996 * 119.98556 * 180.25186 * 22 21 20 38 38 H 1.08001 * 120.01299 * 179.72475 * 23 22 21 39 39 H 1.08006 * 120.01179 * 359.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4026 -6.0980 -0.0003 14 7 1.5128 -7.2652 -0.0008 15 6 2.2453 -8.5339 -0.0009 16 1 3.3208 -8.4560 0.1583 17 6 1.7476 -9.6377 -0.9373 18 6 1.5334 -9.7608 0.5726 19 1 0.5199 -9.6239 0.9499 20 6 2.3726 -10.7687 1.3147 21 6 3.4113 -11.4130 0.6683 22 6 4.1850 -12.3342 1.3491 23 6 3.9144 -12.6201 2.6739 24 6 2.8714 -11.9795 3.3207 25 9 2.6056 -12.2586 4.6156 26 6 2.1002 -11.0529 2.6392 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5568 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 0.5428 -4.9308 -0.0011 33 1 0.5428 -7.2651 -0.0015 34 1 2.4959 -10.2857 -1.3939 35 1 0.8754 -9.4199 -1.5537 36 1 3.6210 -11.1932 -0.3681 37 1 4.9986 -12.8338 0.8443 38 1 4.5162 -13.3432 3.2044 39 1 1.2863 -10.5525 3.1427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273133845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:08 Heat of formation + Delta-G solvation = -35.920221 kcal Electronic energy + Delta-G solvation = -21435.644796 eV Core-core repulsion = 17872.045001 eV Total energy + Delta-G solvation = -3563.599794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.16712 -40.22831 -39.34232 -37.22598 -34.80972 -33.28925 -32.66050 -31.27454 -30.32527 -29.25700 -24.88138 -24.32932 -23.15581 -22.31125 -21.00890 -20.84545 -20.61490 -18.34139 -17.43719 -16.94373 -16.47625 -16.38827 -16.08080 -15.84749 -15.14945 -14.93914 -14.51614 -14.45287 -14.09959 -13.59837 -13.51330 -13.32780 -12.88404 -12.81270 -12.38977 -12.28320 -12.07287 -11.53629 -11.31967 -11.20677 -11.01116 -10.86039 -10.65283 -10.32140 -10.01094 -9.58203 -9.36134 -9.28450 -9.07587 -8.72493 -8.47066 -8.25386 -6.09525 -4.12283 0.78668 0.86355 2.81933 3.09688 3.31516 3.35244 3.38851 3.43081 3.77165 3.96296 4.26982 4.38292 4.43639 4.48060 4.58650 4.67545 4.70024 4.77699 4.87841 5.07859 5.27564 5.40262 5.48993 5.66697 5.69154 5.74474 5.78909 5.97720 6.16419 6.27156 6.38005 6.52027 6.55473 6.75797 6.94833 7.16332 7.55060 7.62081 7.89304 8.23774 8.37325 8.89509 8.95047 9.52460 11.02101 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.002228 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.543258 B =12565.148973 C =12848.128315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.736 5.736 12 C 0.702 3.298 13 O -0.594 6.594 14 N -0.724 5.724 15 C 0.130 3.870 16 H 0.141 0.859 17 C -0.186 4.186 18 C -0.136 4.136 19 H 0.119 0.881 20 C -0.016 4.016 21 C -0.131 4.131 22 C -0.086 4.086 23 C -0.161 4.161 24 C 0.101 3.899 25 F -0.141 7.141 26 C -0.147 4.147 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.394 0.606 33 H 0.397 0.603 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -26.637 1.314 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.402 3.598 13 O -0.473 6.473 14 N -0.378 5.378 15 C 0.022 3.978 16 H 0.159 0.841 17 C -0.224 4.224 18 C -0.156 4.156 19 H 0.136 0.864 20 C -0.016 4.016 21 C -0.149 4.149 22 C -0.104 4.104 23 C -0.180 4.180 24 C 0.081 3.919 25 F -0.119 7.119 26 C -0.166 4.166 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.231 0.769 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.748 -26.422 1.369 26.600 hybrid contribution -0.713 0.805 0.327 1.124 sum 2.035 -25.617 1.695 25.753 Atomic orbital electron populations 1.69944 1.06092 1.26988 1.50346 1.24996 0.94904 0.99418 0.94986 0.86560 0.79503 0.82598 0.78801 1.20090 1.21266 1.20099 1.21012 0.93246 0.90347 1.51416 0.92247 1.19323 0.94244 0.91053 0.97817 1.21625 0.95671 0.80257 1.00755 1.45541 1.09918 1.05255 1.78227 1.16001 0.85642 0.80338 0.77833 1.90893 1.11705 1.86504 1.58164 1.44527 1.09043 1.03713 1.80505 1.21491 0.97113 0.78326 1.00893 0.84145 1.23704 1.04492 1.02721 0.91531 1.21618 1.00120 0.98240 0.95643 0.86352 1.18889 0.95039 0.95161 0.92531 1.21180 0.95645 0.97287 1.00811 1.20994 0.98958 0.97040 0.93397 1.21155 0.98370 1.02357 0.96118 1.17675 0.97117 0.98139 0.78921 1.91507 1.93436 1.92618 1.34354 1.20956 1.01614 0.99213 0.94829 0.92796 0.95954 0.95969 0.92679 0.92671 0.77312 0.76949 0.87485 0.87781 0.84935 0.84859 0.84832 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.98 5.61 -4.04 -0.02 2.95 16 11 N -0.74 -12.76 5.56 -65.22 -0.36 -13.12 16 12 C 0.70 12.02 8.57 -86.92 -0.74 11.28 16 13 O -0.59 -12.59 15.91 5.28 0.08 -12.51 16 14 N -0.72 -8.77 5.57 -58.64 -0.33 -9.09 16 15 C 0.13 1.38 6.07 -67.90 -0.41 0.97 16 16 H 0.14 1.80 7.40 -51.93 -0.38 1.41 16 17 C -0.19 -1.41 9.79 -26.70 -0.26 -1.67 16 18 C -0.14 -1.12 5.96 -91.77 -0.55 -1.66 16 19 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 20 C -0.02 -0.14 5.61 -104.64 -0.59 -0.73 16 21 C -0.13 -1.02 9.30 -39.57 -0.37 -1.39 16 22 C -0.09 -0.62 10.04 -39.59 -0.40 -1.01 16 23 C -0.16 -1.31 10.03 -39.52 -0.40 -1.70 16 24 C 0.10 0.98 7.30 -39.42 -0.29 0.69 16 25 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 26 C -0.15 -1.38 9.72 -39.51 -0.38 -1.76 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 5.78 8.49 -40.82 -0.35 5.43 16 33 H 0.40 3.61 8.84 -40.82 -0.36 3.25 16 34 H 0.11 0.69 6.17 -51.92 -0.32 0.36 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.13 0.82 6.02 -52.49 -0.32 0.50 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -32.80 342.10 -9.73 -42.53 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.07 Total: 4.55 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.96 Total: -7.06 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.05 Total: -47.54 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.80 -9.73 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273133845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.609 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds