Wall clock time and date at job start Tue Mar 31 2020 07:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99791 * 2 1 4 4 H 1.48506 * 109.47239 * 239.99821 * 3 2 1 5 5 H 1.48498 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47107 * 120.00447 * 3 2 1 7 7 C 1.37876 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00121 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00153 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47006 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46935 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00036 * 180.02562 * 11 10 9 13 13 O 1.21594 * 120.00017 * 359.97438 * 12 11 10 14 14 N 1.34784 * 120.00092 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99948 * 179.97438 * 14 12 11 16 16 H 1.08999 * 115.56186 * 9.31809 * 15 14 12 17 17 C 1.53069 * 117.51450 * 223.60937 * 15 14 12 18 18 C 1.53000 * 59.98584 * 252.52495 * 17 15 14 19 19 H 1.09002 * 117.49833 * 107.50105 * 18 17 15 20 20 C 1.50697 * 117.50034 * 252.49893 * 18 17 15 21 21 C 1.38270 * 119.98934 * 8.47106 * 20 18 17 22 22 C 1.38226 * 120.05293 * 179.76743 * 21 20 18 23 23 C 1.38213 * 120.02284 * 0.51014 * 22 21 20 24 24 C 1.38436 * 119.97740 * 359.74358 * 23 22 21 25 25 F 1.35101 * 120.02920 * 179.97438 * 24 23 22 26 26 C 1.38174 * 119.98812 * 188.74745 * 20 18 17 27 27 H 0.96998 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47333 * 59.99897 * 9 7 2 29 29 H 1.08999 * 109.46923 * 300.00294 * 9 7 2 30 30 H 1.08996 * 109.47085 * 60.00015 * 10 9 7 31 31 H 1.09004 * 109.46802 * 299.99709 * 10 9 7 32 32 H 0.97004 * 119.99678 * 359.97438 * 11 10 9 33 33 H 0.96997 * 119.99307 * 0.02562 * 14 12 11 34 34 H 1.09008 * 117.49334 * 145.04050 * 17 15 14 35 35 H 1.08999 * 117.51639 * 0.02562 * 17 15 14 36 36 H 1.08002 * 119.97349 * 0.02562 * 21 20 18 37 37 H 1.07996 * 119.98556 * 180.25186 * 22 21 20 38 38 H 1.08001 * 120.01299 * 179.72475 * 23 22 21 39 39 H 1.08006 * 120.01179 * 359.97438 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0007 13 8 3.4026 -6.0980 -0.0003 14 7 1.5128 -7.2652 -0.0008 15 6 2.2453 -8.5339 -0.0009 16 1 3.3208 -8.4560 0.1583 17 6 1.7476 -9.6377 -0.9373 18 6 1.5334 -9.7608 0.5726 19 1 0.5199 -9.6239 0.9499 20 6 2.3726 -10.7687 1.3147 21 6 3.4113 -11.4130 0.6683 22 6 4.1850 -12.3342 1.3491 23 6 3.9144 -12.6201 2.6739 24 6 2.8714 -11.9795 3.3207 25 9 2.6056 -12.2586 4.6156 26 6 2.1002 -11.0529 2.6392 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5568 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 0.5428 -4.9308 -0.0011 33 1 0.5428 -7.2651 -0.0015 34 1 2.4959 -10.2857 -1.3939 35 1 0.8754 -9.4199 -1.5537 36 1 3.6210 -11.1932 -0.3681 37 1 4.9986 -12.8338 0.8443 38 1 4.5162 -13.3432 3.2044 39 1 1.2863 -10.5525 3.1427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273133845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:07 Heat of formation + Delta-G solvation = -56.549868 kcal Electronic energy + Delta-G solvation = -21436.539364 eV Core-core repulsion = 17872.045001 eV Total energy + Delta-G solvation = -3564.494363 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.91935 -41.22670 -40.32372 -38.08133 -36.51135 -34.87882 -34.12418 -31.98037 -31.38529 -30.67270 -26.75829 -25.00255 -23.91301 -23.40251 -22.61197 -21.91645 -21.51992 -19.58177 -18.48215 -18.17304 -17.76572 -17.12219 -17.04204 -16.61556 -16.60128 -16.50032 -15.87502 -15.58032 -15.03716 -15.02016 -14.64781 -14.34705 -14.24319 -13.59775 -13.55100 -13.21250 -13.04213 -12.93865 -12.71700 -12.53008 -12.40347 -12.16354 -11.93387 -11.68659 -11.56496 -11.49730 -11.22402 -10.59246 -10.27578 -9.93794 -9.73347 -9.33667 -8.23219 -6.33391 0.13671 0.22838 1.42622 1.45080 1.52667 1.67314 2.06384 2.41837 2.52710 3.03129 3.11627 3.24294 3.33351 3.66456 3.74914 3.84544 3.98950 4.12211 4.13353 4.25373 4.46287 4.47617 4.53153 4.74855 4.86619 4.88574 4.96508 5.06734 5.12974 5.16286 5.31519 5.38215 5.50334 5.51920 5.57884 5.60489 5.79567 5.93234 6.03523 6.18002 6.79627 7.11178 7.35814 7.58034 8.88446 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.002228 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.543258 B =12565.148973 C =12848.128315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.732 5.732 12 C 0.701 3.299 13 O -0.638 6.638 14 N -0.704 5.704 15 C 0.095 3.905 16 H 0.116 0.884 17 C -0.160 4.160 18 C -0.119 4.119 19 H 0.131 0.869 20 C -0.030 4.030 21 C -0.133 4.133 22 C -0.085 4.085 23 C -0.163 4.163 24 C 0.075 3.925 25 F -0.152 7.152 26 C -0.159 4.159 27 H 0.266 0.734 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.408 0.592 33 H 0.414 0.586 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -27.728 0.471 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.386 5.386 12 C 0.401 3.599 13 O -0.520 6.520 14 N -0.358 5.358 15 C -0.012 4.012 16 H 0.134 0.866 17 C -0.199 4.199 18 C -0.139 4.139 19 H 0.149 0.851 20 C -0.031 4.031 21 C -0.151 4.151 22 C -0.103 4.103 23 C -0.182 4.182 24 C 0.056 3.944 25 F -0.131 7.131 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.243 0.757 33 H 0.251 0.749 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.168 0.832 37 H 0.180 0.820 38 H 0.168 0.832 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.886 -27.573 0.525 27.729 hybrid contribution -0.769 1.031 0.592 1.416 sum 2.117 -26.542 1.117 26.649 Atomic orbital electron populations 1.70047 1.07508 1.28050 1.50990 1.25866 0.95809 1.03072 0.94436 0.85504 0.78305 0.78145 0.79133 1.19287 1.20612 1.19414 1.21444 0.93621 0.91925 1.51570 0.92284 1.19125 0.94226 0.91605 0.96387 1.21081 0.94627 0.81045 0.99640 1.45202 1.10446 1.04355 1.78614 1.16098 0.85137 0.81173 0.77515 1.90862 1.13766 1.87222 1.60133 1.44284 1.09829 1.02720 1.78951 1.21549 0.96209 0.78351 1.05048 0.86622 1.23820 1.04862 0.99885 0.91290 1.21616 1.00075 0.95912 0.96296 0.85079 1.19038 0.95805 0.95750 0.92466 1.21489 0.95037 0.96852 1.01722 1.21358 0.99321 0.96612 0.93005 1.21444 0.97850 1.02231 0.96684 1.17968 0.98327 0.99277 0.78782 1.91471 1.93651 1.92818 1.35150 1.21095 1.01941 0.99457 0.95332 0.92548 0.97176 0.97337 0.93917 0.93696 0.75670 0.74948 0.85903 0.86269 0.83183 0.82036 0.83242 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.58 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.16 6.95 5.61 86.38 0.48 7.44 16 11 N -0.73 -25.30 5.56 -478.52 -2.66 -27.96 16 12 C 0.70 23.87 8.57 179.05 1.53 25.40 16 13 O -0.64 -27.44 15.91 -4.01 -0.06 -27.51 16 14 N -0.70 -16.21 5.57 -457.70 -2.55 -18.76 16 15 C 0.10 1.91 6.07 45.02 0.27 2.19 16 16 H 0.12 2.96 7.40 -2.39 -0.02 2.94 16 17 C -0.16 -1.97 9.79 30.62 0.30 -1.68 16 18 C -0.12 -1.71 5.96 -11.54 -0.07 -1.78 16 19 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 20 C -0.03 -0.49 5.61 -19.87 -0.11 -0.60 16 21 C -0.13 -1.79 9.30 22.27 0.21 -1.58 16 22 C -0.09 -1.03 10.04 22.26 0.22 -0.81 16 23 C -0.16 -2.43 10.03 22.31 0.22 -2.21 16 24 C 0.08 1.44 7.30 22.38 0.16 1.61 16 25 F -0.15 -3.29 17.27 44.97 0.78 -2.51 16 26 C -0.16 -2.91 9.72 22.31 0.22 -2.69 16 27 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.41 11.73 8.49 -92.70 -0.79 10.95 16 33 H 0.41 6.71 8.84 -92.71 -0.82 5.89 16 34 H 0.12 1.15 6.17 -2.38 -0.01 1.13 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.15 1.41 6.02 -2.91 -0.02 1.40 16 37 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 39 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -71.41 342.10 1.59 -69.82 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.52 Total: 18.04 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 4.29 Total: -2.84 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -4.93 Total: -100.61 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.51 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.41 1.59 -69.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273133845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.268 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds