Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00132 * 2 1 4 4 N 1.46504 * 109.47269 * 125.00213 * 3 2 1 5 5 C 1.46498 * 120.00122 * 270.00577 * 4 3 2 6 6 C 1.50696 * 109.47024 * 269.99627 * 5 4 3 7 7 H 1.07997 * 120.00168 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00042 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00142 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46884 * 60.00504 * 10 8 6 12 12 H 1.48500 * 109.47068 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47164 * 300.00501 * 10 8 6 14 14 C 1.34773 * 120.00159 * 90.00005 * 4 3 2 15 15 O 1.21567 * 120.00490 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99813 * 0.02562 * 14 4 3 17 17 C 1.39065 * 120.00322 * 185.08079 * 16 14 4 18 18 C 1.39162 * 120.49208 * 174.83437 * 17 16 14 19 19 C 1.38969 * 118.28684 * 179.97438 * 18 17 16 20 20 O 1.35541 * 120.46586 * 180.02562 * 19 18 17 21 21 C 1.42902 * 117.00118 * 180.02562 * 20 19 18 22 22 N 1.32986 * 119.06152 * 0.02562 * 19 18 17 23 23 C 1.31750 * 120.89435 * 359.97438 * 22 19 18 24 24 N 1.31756 * 121.88816 * 359.97438 * 23 22 19 25 25 H 1.08002 * 119.99573 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00153 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00153 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47050 * 5.00580 * 3 2 1 29 29 H 1.08997 * 109.47488 * 245.00500 * 3 2 1 30 30 H 1.08996 * 109.47386 * 29.99635 * 5 4 3 31 31 H 1.09002 * 109.47374 * 149.99924 * 5 4 3 32 32 H 0.97000 * 119.99639 * 179.97438 * 9 8 6 33 33 H 0.97000 * 120.00268 * 5.07821 * 16 14 4 34 34 H 1.08001 * 120.85256 * 0.25862 * 18 17 16 35 35 H 1.09005 * 109.46992 * 59.99753 * 21 20 19 36 36 H 1.08995 * 109.47222 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46791 * 299.99786 * 21 20 19 38 38 H 1.08000 * 119.05540 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3033 3.8369 1.6367 8 6 2.5186 4.0665 3.6084 9 7 1.9592 3.4656 4.6359 10 14 2.8730 5.8993 3.6777 11 1 2.1380 6.5872 2.5859 12 1 2.4321 6.4395 4.9888 13 1 4.3311 6.1281 3.5135 14 6 4.2497 0.8661 0.9824 15 8 5.0216 0.8879 1.9213 16 7 4.6499 0.3762 -0.2077 17 6 5.9089 -0.2008 -0.3344 18 6 6.2918 -0.8052 -1.5280 19 6 7.5606 -1.3670 -1.6043 20 8 7.9793 -1.9664 -2.7455 21 6 9.2968 -2.5198 -2.7421 22 7 8.3581 -1.3081 -0.5417 23 6 7.9598 -0.7270 0.5717 24 7 6.7655 -0.1821 0.6837 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 1.4889 1.6965 2.5460 31 1 3.0991 1.3601 3.2260 32 1 1.7303 3.9743 5.4295 33 1 4.0598 0.4260 -0.9760 34 1 5.6219 -0.8328 -2.3747 35 1 9.3683 -3.2830 -1.9671 36 1 9.5055 -2.9674 -3.7137 37 1 10.0218 -1.7305 -2.5428 38 1 8.6320 -0.6957 1.4165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292814067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = 33.086539 kcal Electronic energy + Delta-G solvation = -22905.822847 eV Core-core repulsion = 19365.135372 eV Total energy + Delta-G solvation = -3540.687475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.26450 -39.73150 -38.38333 -35.93443 -34.98796 -33.17081 -32.39510 -31.97921 -31.03758 -27.83183 -27.31113 -25.60513 -24.38665 -23.87498 -22.33564 -20.25361 -19.70848 -19.08628 -17.57991 -17.36906 -16.48504 -16.29413 -16.05692 -15.40552 -15.11313 -15.07685 -14.81119 -14.57210 -14.17056 -14.02016 -13.79640 -13.24824 -12.83653 -12.31499 -12.22501 -11.87612 -11.77811 -11.35424 -11.18093 -11.00147 -10.90132 -10.65799 -10.59120 -10.18649 -9.75340 -9.66158 -9.32318 -9.27219 -8.78071 -8.65812 -8.42454 -7.73286 -6.03825 -4.08652 1.03059 1.32238 2.31894 2.58416 3.11253 3.32593 3.37427 3.40958 3.67816 4.10511 4.11915 4.15058 4.45180 4.60594 4.91210 5.01058 5.09336 5.11859 5.21410 5.30099 5.31249 5.34980 5.41615 5.47618 5.91556 5.93375 6.08317 6.40145 6.69144 6.73390 6.85364 6.91524 7.09600 7.33280 7.46806 7.58104 7.92996 8.22003 8.24058 8.52225 8.91666 9.19809 9.56557 11.04107 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.003990 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.040023 B = 7015.320875 C = 8088.889259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.602 5.602 5 C 0.263 3.737 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.686 3.314 15 O -0.513 6.513 16 N -0.665 5.665 17 C 0.459 3.541 18 C -0.298 4.298 19 C 0.379 3.621 20 O -0.305 6.305 21 C 0.040 3.960 22 N -0.607 5.607 23 C 0.362 3.638 24 N -0.523 5.523 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.411 0.589 34 H 0.148 0.852 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -10.834 -15.677 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.338 5.338 5 C 0.144 3.856 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.387 3.613 15 O -0.382 6.382 16 N -0.315 5.315 17 C 0.219 3.781 18 C -0.326 4.326 19 C 0.194 3.806 20 O -0.209 6.209 21 C -0.055 4.055 22 N -0.340 5.340 23 C 0.073 3.927 24 N -0.247 5.247 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.166 0.834 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 6.698 -10.712 -14.214 19.017 hybrid contribution -0.540 0.927 -0.960 1.440 sum 6.158 -9.785 -15.174 19.077 Atomic orbital electron populations 1.23835 0.95790 1.01881 0.99914 1.23437 0.96555 0.98870 1.00472 1.20558 0.93307 0.95859 0.89122 1.47675 1.08497 1.63259 1.14321 1.19249 0.95297 0.93572 0.77466 1.21408 1.40687 0.93344 1.01327 0.92507 1.24914 0.95015 0.98737 0.95287 1.69922 1.41925 1.36274 1.05168 0.86563 0.78865 0.84886 0.77116 1.20303 1.21182 1.20166 1.16047 0.83576 0.79529 0.82178 1.91039 1.51673 1.57776 1.37673 1.43223 1.14194 1.60255 1.13810 1.18116 0.85534 0.86222 0.88240 1.20940 0.98397 1.12506 1.00720 1.19567 0.88798 0.87071 0.85205 1.86200 1.34590 1.69220 1.30924 1.22904 0.81037 0.98623 1.02954 1.68112 1.37594 1.26499 1.01838 1.24710 0.89878 0.85209 0.92893 1.68644 1.03775 1.22334 1.29913 0.88699 0.88147 0.87815 0.88811 0.91696 0.94641 0.93631 0.92635 0.75030 0.83380 0.92034 0.88560 0.92033 0.78213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 14.32 29.02 0.42 -1.74 16 2 C -0.17 -2.33 9.85 -36.03 -0.35 -2.69 16 3 C 0.14 2.07 5.66 -5.19 -0.03 2.05 16 4 N -0.60 -12.46 2.44 -182.19 -0.44 -12.91 16 5 C 0.26 6.78 5.16 -5.20 -0.03 6.75 16 6 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.69 14.55 8.23 -86.92 -0.72 13.83 16 15 O -0.51 -13.26 14.23 5.31 0.08 -13.18 16 16 N -0.66 -10.71 5.26 -15.71 -0.08 -10.79 16 17 C 0.46 7.44 7.45 -154.38 -1.15 6.29 16 18 C -0.30 -3.90 9.99 -38.97 -0.39 -4.29 16 19 C 0.38 5.04 7.52 -16.78 -0.13 4.91 16 20 O -0.30 -3.48 10.49 -18.32 -0.19 -3.68 16 21 C 0.04 0.33 10.41 101.05 1.05 1.38 16 22 N -0.61 -8.31 9.38 -14.71 -0.14 -8.45 16 23 C 0.36 5.30 12.28 -92.23 -1.13 4.16 16 24 N -0.52 -9.49 8.04 -13.79 -0.11 -9.60 16 25 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 27 H 0.10 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 29 H 0.06 0.78 6.29 -51.93 -0.33 0.46 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.41 5.00 6.41 -40.82 -0.26 4.74 16 34 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -35.02 336.19 -7.70 -42.72 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.71 Total: 2.51 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: -2.88 Total: 17.19 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -0.04 Total: -67.42 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.12 Total: -16.86 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.02 -7.70 -42.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292814067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.806 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds