Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00132 * 2 1 4 4 N 1.46504 * 109.47269 * 125.00213 * 3 2 1 5 5 C 1.46498 * 120.00122 * 270.00577 * 4 3 2 6 6 C 1.50696 * 109.47024 * 269.99627 * 5 4 3 7 7 H 1.07997 * 120.00168 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00042 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00142 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 120.00075 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46884 * 60.00504 * 10 8 6 12 12 H 1.48500 * 109.47068 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47164 * 300.00501 * 10 8 6 14 14 C 1.34773 * 120.00159 * 90.00005 * 4 3 2 15 15 O 1.21567 * 120.00490 * 180.02562 * 14 4 3 16 16 N 1.34780 * 119.99813 * 0.02562 * 14 4 3 17 17 C 1.39065 * 120.00322 * 185.08079 * 16 14 4 18 18 C 1.39162 * 120.49208 * 174.83437 * 17 16 14 19 19 C 1.38969 * 118.28684 * 179.97438 * 18 17 16 20 20 O 1.35541 * 120.46586 * 180.02562 * 19 18 17 21 21 C 1.42902 * 117.00118 * 180.02562 * 20 19 18 22 22 N 1.32986 * 119.06152 * 0.02562 * 19 18 17 23 23 C 1.31750 * 120.89435 * 359.97438 * 22 19 18 24 24 N 1.31756 * 121.88816 * 359.97438 * 23 22 19 25 25 H 1.08002 * 119.99573 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00153 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00153 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47050 * 5.00580 * 3 2 1 29 29 H 1.08997 * 109.47488 * 245.00500 * 3 2 1 30 30 H 1.08996 * 109.47386 * 29.99635 * 5 4 3 31 31 H 1.09002 * 109.47374 * 149.99924 * 5 4 3 32 32 H 0.97000 * 119.99639 * 179.97438 * 9 8 6 33 33 H 0.97000 * 120.00268 * 5.07821 * 16 14 4 34 34 H 1.08001 * 120.85256 * 0.25862 * 18 17 16 35 35 H 1.09005 * 109.46992 * 59.99753 * 21 20 19 36 36 H 1.08995 * 109.47222 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46791 * 299.99786 * 21 20 19 38 38 H 1.08000 * 119.05540 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3033 3.8369 1.6367 8 6 2.5186 4.0665 3.6084 9 7 1.9592 3.4656 4.6359 10 14 2.8730 5.8993 3.6777 11 1 2.1380 6.5872 2.5859 12 1 2.4321 6.4395 4.9888 13 1 4.3311 6.1281 3.5135 14 6 4.2497 0.8661 0.9824 15 8 5.0216 0.8879 1.9213 16 7 4.6499 0.3762 -0.2077 17 6 5.9089 -0.2008 -0.3344 18 6 6.2918 -0.8052 -1.5280 19 6 7.5606 -1.3670 -1.6043 20 8 7.9793 -1.9664 -2.7455 21 6 9.2968 -2.5198 -2.7421 22 7 8.3581 -1.3081 -0.5417 23 6 7.9598 -0.7270 0.5717 24 7 6.7655 -0.1821 0.6837 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 1.4889 1.6965 2.5460 31 1 3.0991 1.3601 3.2260 32 1 1.7303 3.9743 5.4295 33 1 4.0598 0.4260 -0.9760 34 1 5.6219 -0.8328 -2.3747 35 1 9.3683 -3.2830 -1.9671 36 1 9.5055 -2.9674 -3.7137 37 1 10.0218 -1.7305 -2.5428 38 1 8.6320 -0.6957 1.4165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292814067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = 9.179707 kcal Electronic energy + Delta-G solvation = -22906.859525 eV Core-core repulsion = 19365.135372 eV Total energy + Delta-G solvation = -3541.724153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.43392 -41.14213 -39.41591 -37.37430 -36.43632 -35.02224 -33.78443 -33.29345 -32.25620 -29.52534 -28.29059 -26.98201 -25.54682 -25.46450 -23.84923 -21.61945 -20.91513 -20.21080 -18.99979 -18.65600 -18.45310 -17.36966 -17.23610 -16.66927 -16.55308 -16.41305 -16.03708 -15.89488 -15.55638 -15.25437 -14.96648 -14.63147 -14.39758 -14.12969 -13.31712 -13.12127 -12.91821 -12.88955 -12.79942 -12.56766 -12.31069 -12.19864 -12.16110 -11.73268 -11.68036 -11.28239 -10.61630 -10.44774 -10.34546 -10.12586 -9.89348 -9.42340 -8.19559 -6.33808 -0.08726 0.19299 1.14995 1.38400 1.42822 1.48858 1.50683 2.05763 2.18438 2.40578 2.80540 2.88484 3.10424 3.11258 3.41307 3.88207 4.01255 4.11122 4.20680 4.32464 4.45100 4.45695 4.48164 4.71888 4.77935 4.86482 4.96709 5.05057 5.21377 5.40214 5.51182 5.59298 5.71313 5.77338 5.91511 5.99821 6.08228 6.18421 6.74542 6.86913 7.22211 7.33515 7.62751 8.87196 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.003990 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.040023 B = 7015.320875 C = 8088.889259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.132 3.868 4 N -0.606 5.606 5 C 0.283 3.717 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.259 1.259 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.686 3.314 15 O -0.570 6.570 16 N -0.648 5.648 17 C 0.435 3.565 18 C -0.279 4.279 19 C 0.373 3.627 20 O -0.304 6.304 21 C 0.033 3.967 22 N -0.601 5.601 23 C 0.357 3.643 24 N -0.572 5.572 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.029 0.971 31 H -0.002 1.002 32 H 0.267 0.733 33 H 0.430 0.570 34 H 0.182 0.818 35 H 0.060 0.940 36 H 0.129 0.871 37 H 0.060 0.940 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.929 -11.014 -18.334 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.010 3.990 4 N -0.341 5.341 5 C 0.161 3.839 6 C -0.582 4.582 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.206 1.206 14 C 0.387 3.613 15 O -0.444 6.444 16 N -0.300 5.300 17 C 0.197 3.803 18 C -0.306 4.306 19 C 0.187 3.813 20 O -0.209 6.209 21 C -0.061 4.061 22 N -0.335 5.335 23 C 0.069 3.931 24 N -0.297 5.297 25 H 0.134 0.866 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.076 0.924 33 H 0.272 0.728 34 H 0.200 0.800 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.078 0.922 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.729 -10.927 -16.978 21.282 hybrid contribution -0.492 0.859 -0.228 1.015 sum 6.237 -10.069 -17.206 20.889 Atomic orbital electron populations 1.24065 0.95453 1.03006 0.97537 1.23300 0.96924 0.98002 1.02547 1.20835 0.92888 0.96888 0.88436 1.47492 1.09477 1.62946 1.14164 1.18636 0.93920 0.92368 0.78938 1.21689 1.40571 0.94484 1.01427 0.92871 1.25801 0.94686 1.03534 0.94853 1.70042 1.42777 1.38108 1.05741 0.85512 0.78347 0.79306 0.77884 1.18382 1.20395 1.20644 1.16177 0.83077 0.79123 0.82901 1.90992 1.53264 1.60061 1.40056 1.42736 1.14767 1.59834 1.12638 1.18334 0.85309 0.87482 0.89200 1.21117 0.98736 1.10479 1.00245 1.19818 0.88933 0.86916 0.85599 1.86216 1.36165 1.68816 1.29664 1.23199 0.79435 0.98512 1.04936 1.68182 1.37571 1.25933 1.01773 1.25089 0.89321 0.84865 0.93850 1.68548 1.05350 1.23962 1.31796 0.86639 0.87971 0.87226 0.89495 0.88165 0.95352 0.98371 0.92414 0.72767 0.80025 0.92115 0.85251 0.92153 0.76211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 14.32 67.78 0.97 -2.68 16 2 C -0.19 -4.78 9.85 25.65 0.25 -4.52 16 3 C 0.13 3.90 5.66 85.63 0.48 4.38 16 4 N -0.61 -25.58 2.44 -848.60 -2.07 -27.65 16 5 C 0.28 15.19 5.16 85.63 0.44 15.63 16 6 C -0.54 -31.19 9.39 25.60 0.24 -30.95 16 7 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 10 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 C 0.69 29.80 8.23 179.05 1.47 31.27 16 15 O -0.57 -30.95 14.23 -3.93 -0.06 -31.00 16 16 N -0.65 -20.46 5.26 -321.89 -1.69 -22.16 16 17 C 0.44 13.85 7.45 132.85 0.99 14.83 16 18 C -0.28 -6.69 9.99 22.67 0.23 -6.47 16 19 C 0.37 9.16 7.52 84.69 0.64 9.80 16 20 O -0.30 -6.11 10.49 -88.46 -0.93 -7.04 16 21 C 0.03 0.46 10.41 113.37 1.18 1.64 16 22 N -0.60 -15.76 9.38 -313.03 -2.94 -18.70 16 23 C 0.36 10.43 12.28 180.91 2.22 12.65 16 24 N -0.57 -21.09 8.04 -197.55 -1.59 -22.68 16 25 H 0.12 2.12 8.06 -2.91 -0.02 2.10 16 26 H 0.10 2.25 7.84 -2.91 -0.02 2.23 16 27 H 0.11 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.09 2.70 7.72 -2.38 -0.02 2.68 16 29 H 0.10 2.20 6.29 -2.39 -0.02 2.18 16 30 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 31 H 0.00 -0.12 7.42 -2.39 -0.02 -0.13 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.43 9.61 6.41 -92.71 -0.59 9.02 16 34 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 35 H 0.06 0.86 8.12 -2.38 -0.02 0.84 16 36 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 38 H 0.22 5.08 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -79.11 336.19 3.11 -76.00 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.49 Total: 15.27 kcal Atomic # 6 Polarization: 37.06 SS G_CDS: 9.58 Total: 46.64 kcal Atomic # 7 Polarization: -138.93 SS G_CDS: -8.00 Total: -146.93 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.98 Total: -38.04 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.11 3.11 -76.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292814067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.180 kcal (2) G-P(sol) polarization free energy of solvation -79.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds