Wall clock time and date at job start Tue Mar 31 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46999 * 299.99720 * 3 2 1 6 6 H 1.48501 * 109.47265 * 59.99570 * 3 2 1 7 7 C 1.39896 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99790 * 175.56579 * 7 2 1 9 9 C 1.41160 * 119.99749 * 355.55756 * 7 2 1 10 10 C 1.40873 * 120.16208 * 214.78112 * 9 7 2 11 11 C 1.36367 * 119.82787 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16890 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83298 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00271 * 35.28953 * 13 12 11 15 15 O 1.21580 * 119.99869 * 355.70931 * 14 13 12 16 16 N 1.34775 * 120.00014 * 175.71264 * 14 13 12 17 17 C 1.47427 * 125.64904 * 359.95993 * 16 14 13 18 18 C 1.54903 * 104.83235 * 155.90473 * 17 16 14 19 19 C 1.55159 * 101.58396 * 37.01092 * 18 17 16 20 20 C 1.47018 * 125.64884 * 179.97438 * 16 14 13 21 21 H 1.08998 * 109.88854 * 300.44445 * 20 16 14 22 22 C 1.53001 * 109.88101 * 61.45738 * 20 16 14 23 23 F 1.39909 * 109.46993 * 298.28237 * 22 20 16 24 24 C 1.39476 * 120.33187 * 0.28702 * 12 11 10 25 25 C 1.36382 * 120.16956 * 359.44855 * 24 12 11 26 26 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.08240 * 0.05274 * 10 9 7 28 28 H 1.08001 * 119.92132 * 180.02562 * 11 10 9 29 29 H 0.96999 * 119.99523 * 215.28977 * 13 12 11 30 30 H 1.09002 * 110.36667 * 274.74323 * 17 16 14 31 31 H 1.09005 * 110.36571 * 36.95328 * 17 16 14 32 32 H 1.09003 * 111.00854 * 155.08332 * 18 17 16 33 33 H 1.08998 * 111.00360 * 278.89358 * 18 17 16 34 34 H 1.09004 * 110.72114 * 206.13895 * 19 18 17 35 35 H 1.08995 * 110.72047 * 82.85568 * 19 18 17 36 36 H 1.08997 * 109.47163 * 58.27653 * 22 20 16 37 37 H 1.09003 * 109.47523 * 178.28594 * 22 20 16 38 38 H 1.07999 * 119.91761 * 179.71220 * 24 12 11 39 39 H 1.08000 * 120.08728 * 180.29438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0857 -1.2130 -0.0718 9 6 1.3056 -2.4321 0.0958 10 6 1.8648 -3.5179 0.7977 11 6 1.1803 -4.6941 0.8850 12 6 -0.0708 -4.8234 0.2819 13 7 -0.7639 -6.0274 0.3759 14 6 -0.6818 -6.7664 1.5000 15 8 0.0580 -6.4219 2.4013 16 7 -1.4196 -7.8873 1.6251 17 6 -2.3536 -8.4182 0.6155 18 6 -2.4511 -9.9332 0.9233 19 6 -2.3971 -9.9402 2.4739 20 6 -1.4266 -8.7829 2.7909 21 1 -0.4245 -9.1758 2.9627 22 6 -1.9062 -8.0220 4.0287 23 9 -1.0242 -6.9706 4.3005 24 6 -0.6286 -3.7546 -0.4193 25 6 0.0417 -2.5703 -0.5107 26 1 -0.4850 0.8401 -0.0004 27 1 2.8330 -3.4189 1.2658 28 1 1.6075 -5.5274 1.4231 29 1 -1.3059 -6.3343 -0.3677 30 1 -3.3310 -7.9467 0.7178 31 1 -1.9590 -8.2578 -0.3879 32 1 -3.3938 -10.3453 0.5634 33 1 -1.6042 -10.4732 0.4998 34 1 -2.0012 -10.8869 2.8418 35 1 -3.3830 -9.7434 2.8950 36 1 -2.9032 -7.6216 3.8453 37 1 -1.9378 -8.6995 4.8820 38 1 -1.5956 -3.8636 -0.8876 39 1 -0.3936 -1.7420 -1.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296346230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:33 Heat of formation + Delta-G solvation = -48.378439 kcal Electronic energy + Delta-G solvation = -23227.186307 eV Core-core repulsion = 19663.046284 eV Total energy + Delta-G solvation = -3564.140023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.12033 -40.17559 -38.22515 -36.79684 -34.31294 -32.95312 -31.48220 -30.85333 -29.45955 -28.57343 -25.63090 -24.90748 -22.85806 -21.66441 -21.15422 -20.41132 -19.11362 -18.01074 -17.23962 -16.92100 -16.06361 -15.40277 -15.38128 -15.11180 -14.96744 -14.42536 -14.01959 -13.80514 -13.39314 -13.18831 -12.92135 -12.60356 -12.44064 -12.30245 -11.99547 -11.63043 -11.60049 -11.26717 -11.20916 -11.08772 -10.92944 -10.83151 -10.75512 -10.63590 -9.93435 -9.41615 -9.35439 -9.13057 -8.76792 -8.48764 -7.44699 -6.73650 -6.53181 -4.25123 2.70292 2.86664 3.14384 3.16013 3.20855 3.23578 3.77040 4.04895 4.14780 4.21902 4.47893 4.52901 4.79427 4.82880 4.89569 4.99308 5.13409 5.25016 5.36415 5.44576 5.47194 5.66113 5.73603 5.83834 5.95415 6.24551 6.32070 6.54556 6.86641 6.98955 7.14078 7.24556 7.35985 7.48430 7.74571 7.96317 8.04769 8.18198 8.40077 8.53411 8.73000 9.02003 9.02930 9.21516 10.38146 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.033113 B = 0.003459 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.379261 B = 8093.618503 C = 8446.262266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.075 0.925 9 C 0.097 3.903 10 C -0.202 4.202 11 C -0.087 4.087 12 C 0.027 3.973 13 N -0.667 5.667 14 C 0.707 3.293 15 O -0.549 6.549 16 N -0.640 5.640 17 C 0.098 3.902 18 C -0.130 4.130 19 C -0.125 4.125 20 C 0.125 3.875 21 H 0.082 0.918 22 C 0.053 3.947 23 F -0.188 7.188 24 C -0.124 4.124 25 C -0.140 4.140 26 H 0.276 0.724 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.389 0.611 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 -17.857 1.027 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.223 4.223 11 C -0.107 4.107 12 C -0.066 4.066 13 N -0.313 5.313 14 C 0.410 3.590 15 O -0.423 6.423 16 N -0.381 5.381 17 C -0.026 4.026 18 C -0.168 4.168 19 C -0.163 4.163 20 C 0.020 3.980 21 H 0.100 0.900 22 C -0.003 4.003 23 F -0.169 7.169 24 C -0.145 4.145 25 C -0.160 4.160 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.222 0.778 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.089 -17.308 1.717 19.182 hybrid contribution -0.128 0.660 -0.260 0.721 sum -8.217 -16.648 1.457 18.623 Atomic orbital electron populations 1.69781 1.07239 1.28400 1.38804 1.25857 0.94920 1.01066 0.92675 0.86168 0.80595 0.81003 0.78292 1.18641 1.20097 1.20058 1.19509 0.94690 0.90233 1.44902 0.90670 1.17711 0.92337 0.92023 0.88479 1.20807 1.01175 0.94925 1.05347 1.20429 0.92766 0.97966 0.99507 1.17084 0.93638 0.84975 1.10868 1.42136 1.51843 1.22124 1.15222 1.15588 0.81088 0.79105 0.83262 1.90994 1.41103 1.70068 1.40117 1.47696 1.46073 1.25786 1.18578 1.22257 0.93709 0.93880 0.92717 1.22740 1.03041 0.95538 0.95447 1.22619 0.99505 0.97556 0.96645 1.21995 1.00486 0.89613 0.85943 0.89974 1.22341 0.92620 0.87973 0.97402 1.92982 1.70422 1.58659 1.94805 1.20280 0.98324 0.93073 1.02828 1.21162 0.97308 0.95388 1.02133 0.91348 0.88669 0.87347 0.77769 0.91650 0.90877 0.89723 0.90395 0.89600 0.90192 0.91475 0.90807 0.89288 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.83 10.59 55.55 0.59 -21.24 16 2 C 0.07 1.80 5.42 -17.34 -0.09 1.71 16 3 Si 0.91 19.59 29.56 -169.99 -5.03 14.57 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.46 -12.74 9.02 -37.85 -0.34 -13.08 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 9 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 10 C -0.20 -5.36 9.74 -39.26 -0.38 -5.75 16 11 C -0.09 -2.19 8.61 -39.79 -0.34 -2.53 16 12 C 0.03 0.63 6.31 -83.57 -0.53 0.10 16 13 N -0.67 -12.69 5.26 -14.10 -0.07 -12.76 16 14 C 0.71 13.65 8.03 -86.92 -0.70 12.95 16 15 O -0.55 -12.97 11.17 5.29 0.06 -12.92 16 16 N -0.64 -8.92 3.07 -168.69 -0.52 -9.44 16 17 C 0.10 0.91 6.61 -2.53 -0.02 0.90 16 18 C -0.13 -0.83 7.08 -24.58 -0.17 -1.01 16 19 C -0.13 -0.83 6.48 -24.89 -0.16 -0.99 16 20 C 0.12 1.42 3.36 -66.95 -0.22 1.20 16 21 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 22 C 0.05 0.65 7.01 37.16 0.26 0.91 16 23 F -0.19 -3.55 14.07 2.25 0.03 -3.52 16 24 C -0.12 -2.96 9.90 -39.79 -0.39 -3.35 16 25 C -0.14 -3.71 8.62 -39.26 -0.34 -4.05 16 26 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 27 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.11 2.75 6.22 -52.49 -0.33 2.43 16 29 H 0.39 5.94 7.27 -40.82 -0.30 5.64 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.64 7.23 -51.93 -0.38 0.26 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.44 7.86 -51.93 -0.41 0.03 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.13 3.58 6.13 -52.49 -0.32 3.26 16 LS Contribution 320.74 15.07 4.83 4.83 Total: -1.00 -33.74 320.74 -9.21 -42.95 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.08 Total: 8.40 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -4.03 Total: -10.88 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.00 Total: -43.44 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.06 Total: -12.92 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.03 Total: -3.52 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.74 -9.21 -42.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296346230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.428 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds