Wall clock time and date at job start Tue Mar 31 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46999 * 299.99720 * 3 2 1 6 6 H 1.48501 * 109.47265 * 59.99570 * 3 2 1 7 7 C 1.39896 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99790 * 175.56579 * 7 2 1 9 9 C 1.41160 * 119.99749 * 355.55756 * 7 2 1 10 10 C 1.40873 * 120.16208 * 214.78112 * 9 7 2 11 11 C 1.36367 * 119.82787 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16890 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83298 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00271 * 35.28953 * 13 12 11 15 15 O 1.21580 * 119.99869 * 355.70931 * 14 13 12 16 16 N 1.34775 * 120.00014 * 175.71264 * 14 13 12 17 17 C 1.47427 * 125.64904 * 359.95993 * 16 14 13 18 18 C 1.54903 * 104.83235 * 155.90473 * 17 16 14 19 19 C 1.55159 * 101.58396 * 37.01092 * 18 17 16 20 20 C 1.47018 * 125.64884 * 179.97438 * 16 14 13 21 21 H 1.08998 * 109.88854 * 300.44445 * 20 16 14 22 22 C 1.53001 * 109.88101 * 61.45738 * 20 16 14 23 23 F 1.39909 * 109.46993 * 298.28237 * 22 20 16 24 24 C 1.39476 * 120.33187 * 0.28702 * 12 11 10 25 25 C 1.36382 * 120.16956 * 359.44855 * 24 12 11 26 26 H 0.97005 * 119.99957 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.08240 * 0.05274 * 10 9 7 28 28 H 1.08001 * 119.92132 * 180.02562 * 11 10 9 29 29 H 0.96999 * 119.99523 * 215.28977 * 13 12 11 30 30 H 1.09002 * 110.36667 * 274.74323 * 17 16 14 31 31 H 1.09005 * 110.36571 * 36.95328 * 17 16 14 32 32 H 1.09003 * 111.00854 * 155.08332 * 18 17 16 33 33 H 1.08998 * 111.00360 * 278.89358 * 18 17 16 34 34 H 1.09004 * 110.72114 * 206.13895 * 19 18 17 35 35 H 1.08995 * 110.72047 * 82.85568 * 19 18 17 36 36 H 1.08997 * 109.47163 * 58.27653 * 22 20 16 37 37 H 1.09003 * 109.47523 * 178.28594 * 22 20 16 38 38 H 1.07999 * 119.91761 * 179.71220 * 24 12 11 39 39 H 1.08000 * 120.08728 * 180.29438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8841 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0857 -1.2130 -0.0718 9 6 1.3056 -2.4321 0.0958 10 6 1.8648 -3.5179 0.7977 11 6 1.1803 -4.6941 0.8850 12 6 -0.0708 -4.8234 0.2819 13 7 -0.7639 -6.0274 0.3759 14 6 -0.6818 -6.7664 1.5000 15 8 0.0580 -6.4219 2.4013 16 7 -1.4196 -7.8873 1.6251 17 6 -2.3536 -8.4182 0.6155 18 6 -2.4511 -9.9332 0.9233 19 6 -2.3971 -9.9402 2.4739 20 6 -1.4266 -8.7829 2.7909 21 1 -0.4245 -9.1758 2.9627 22 6 -1.9062 -8.0220 4.0287 23 9 -1.0242 -6.9706 4.3005 24 6 -0.6286 -3.7546 -0.4193 25 6 0.0417 -2.5703 -0.5107 26 1 -0.4850 0.8401 -0.0004 27 1 2.8330 -3.4189 1.2658 28 1 1.6075 -5.5274 1.4231 29 1 -1.3059 -6.3343 -0.3677 30 1 -3.3310 -7.9467 0.7178 31 1 -1.9590 -8.2578 -0.3879 32 1 -3.3938 -10.3453 0.5634 33 1 -1.6042 -10.4732 0.4998 34 1 -2.0012 -10.8869 2.8418 35 1 -3.3830 -9.7434 2.8950 36 1 -2.9032 -7.6216 3.8453 37 1 -1.9378 -8.6995 4.8820 38 1 -1.5956 -3.8636 -0.8876 39 1 -0.3936 -1.7420 -1.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296346230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:33 Heat of formation + Delta-G solvation = -69.205769 kcal Electronic energy + Delta-G solvation = -23228.089448 eV Core-core repulsion = 19663.046284 eV Total energy + Delta-G solvation = -3565.043164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.35012 -41.53104 -39.68013 -38.35360 -36.10695 -34.75607 -32.64477 -31.69526 -31.41902 -30.43890 -26.86688 -26.36824 -24.17095 -23.11778 -22.59977 -21.84199 -20.49179 -19.38153 -19.15845 -18.05343 -17.61795 -17.00236 -16.60822 -16.50422 -16.04308 -15.93405 -15.59636 -15.09215 -14.81561 -14.57764 -14.14136 -14.04706 -13.95401 -13.55579 -13.34356 -13.29834 -13.15000 -12.84208 -12.73785 -12.46141 -12.16435 -11.92607 -11.77621 -11.72216 -11.58366 -11.37899 -11.20946 -10.91982 -10.59552 -9.64348 -9.45547 -8.67215 -8.48742 -6.31298 0.85009 1.14718 1.39653 1.46586 1.55217 1.62756 2.22975 2.26595 2.82324 3.09223 3.50065 3.60150 3.69428 3.77282 4.04407 4.18434 4.18574 4.38527 4.46915 4.47842 4.54265 4.70084 4.79604 4.89545 4.95283 5.07277 5.13005 5.14118 5.16129 5.28253 5.35700 5.45582 5.47443 5.69412 5.85162 6.05646 6.14325 6.22767 6.40855 6.69277 6.98035 7.02381 7.06204 7.69977 8.44370 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.033113 B = 0.003459 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.379261 B = 8093.618503 C = 8446.262266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.270 1.270 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.066 3.934 10 C -0.219 4.219 11 C -0.098 4.098 12 C 0.043 3.957 13 N -0.660 5.660 14 C 0.700 3.300 15 O -0.600 6.600 16 N -0.636 5.636 17 C 0.085 3.915 18 C -0.119 4.119 19 C -0.111 4.111 20 C 0.115 3.885 21 H 0.065 0.935 22 C 0.038 3.962 23 F -0.230 7.230 24 C -0.121 4.121 25 C -0.155 4.155 26 H 0.284 0.716 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.409 0.591 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.657 -19.627 0.554 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.811 3.189 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.064 3.936 10 C -0.239 4.239 11 C -0.119 4.119 12 C -0.051 4.051 13 N -0.309 5.309 14 C 0.402 3.598 15 O -0.477 6.477 16 N -0.376 5.376 17 C -0.036 4.036 18 C -0.157 4.157 19 C -0.148 4.148 20 C 0.011 3.989 21 H 0.083 0.917 22 C -0.018 4.018 23 F -0.212 7.212 24 C -0.142 4.142 25 C -0.176 4.176 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.246 0.754 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.279 -19.167 1.215 21.783 hybrid contribution 0.424 1.004 -0.077 1.093 sum -9.855 -18.163 1.138 20.696 Atomic orbital electron populations 1.69838 1.08570 1.29829 1.38877 1.26740 0.95830 1.04292 0.91579 0.85042 0.79006 0.76072 0.78799 1.18473 1.18571 1.19488 1.19732 0.94783 0.91356 1.47134 0.91042 1.18016 0.93435 0.92634 0.89549 1.20917 1.01551 0.95503 1.05941 1.20500 0.93833 0.97451 1.00068 1.17114 0.92889 0.86442 1.08673 1.41922 1.51721 1.20871 1.16355 1.15821 0.81227 0.80267 0.82491 1.90965 1.43383 1.71778 1.41624 1.47724 1.45152 1.24077 1.20603 1.22659 0.93080 0.96128 0.91779 1.22760 1.04767 0.93000 0.95138 1.22660 0.99112 0.96133 0.96943 1.22305 1.01273 0.90483 0.84839 0.91677 1.22794 0.92062 0.87499 0.99417 1.92894 1.72031 1.61035 1.95202 1.20515 0.99299 0.91994 1.02358 1.21154 0.97415 0.96267 1.02720 0.90525 0.88800 0.87885 0.75370 0.90260 0.90290 0.86543 0.90390 0.87278 0.88170 0.90414 0.87161 0.85839 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.93 10.59 21.82 0.23 -45.70 16 2 C 0.03 1.43 5.42 85.24 0.46 1.90 16 3 Si 0.99 40.55 29.56 68.60 2.03 42.57 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.50 -28.57 9.02 23.39 0.21 -28.36 16 8 H 0.07 3.97 7.85 -2.92 -0.02 3.95 16 9 C 0.07 3.82 5.55 -21.27 -0.12 3.70 16 10 C -0.22 -12.18 9.74 22.48 0.22 -11.96 16 11 C -0.10 -5.14 8.61 22.13 0.19 -4.95 16 12 C 0.04 2.02 6.31 38.56 0.24 2.27 16 13 N -0.66 -24.61 5.26 -316.78 -1.67 -26.27 16 14 C 0.70 26.92 8.03 179.05 1.44 28.36 16 15 O -0.60 -29.22 11.17 -3.97 -0.04 -29.26 16 16 N -0.64 -16.73 3.07 -805.89 -2.47 -19.20 16 17 C 0.09 1.31 6.61 86.85 0.57 1.88 16 18 C -0.12 -0.99 7.08 31.98 0.23 -0.76 16 19 C -0.11 -0.99 6.48 31.78 0.21 -0.78 16 20 C 0.12 2.41 3.36 45.34 0.15 2.57 16 21 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 22 C 0.04 0.88 7.01 71.98 0.50 1.38 16 23 F -0.23 -8.92 14.07 44.97 0.63 -8.29 16 24 C -0.12 -5.74 9.90 22.14 0.22 -5.52 16 25 C -0.16 -8.46 8.62 22.48 0.19 -8.27 16 26 H 0.28 14.00 8.30 -92.70 -0.77 13.23 16 27 H 0.09 5.04 8.06 -2.91 -0.02 5.02 16 28 H 0.10 5.48 6.22 -2.91 -0.02 5.46 16 29 H 0.41 11.69 7.27 -92.71 -0.67 11.01 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.13 7.23 -2.38 -0.02 1.11 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.10 0.56 7.86 -2.39 -0.02 0.54 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.12 6.76 6.13 -2.91 -0.02 6.74 16 Total: -1.00 -78.37 320.74 3.83 -74.54 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.40 Total: 30.16 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 4.72 Total: -18.55 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -3.91 Total: -91.17 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.04 Total: -29.26 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 0.63 Total: -8.29 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -78.37 3.83 -74.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296346230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.332 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds