Wall clock time and date at job start Tue Mar 31 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99963 * 2 1 4 4 N 1.46493 * 109.46974 * 125.00359 * 3 2 1 5 5 C 1.46507 * 120.00018 * 269.99915 * 4 3 2 6 6 C 1.50699 * 109.47057 * 270.00592 * 5 4 3 7 7 H 1.08004 * 119.99737 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00025 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00048 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46925 * 119.99725 * 10 8 6 13 13 H 1.48493 * 109.47274 * 240.00185 * 10 8 6 14 14 C 1.34774 * 120.00117 * 90.00249 * 4 3 2 15 15 O 1.21576 * 120.00211 * 179.97438 * 14 4 3 16 16 N 1.34778 * 120.00359 * 359.97438 * 14 4 3 17 17 C 1.38987 * 120.00226 * 185.07904 * 16 14 4 18 18 C 1.39551 * 120.48749 * 174.87166 * 17 16 14 19 19 C 1.38163 * 118.45738 * 179.72914 * 18 17 16 20 20 N 1.32499 * 119.26021 * 0.24903 * 19 18 17 21 21 C 1.32302 * 120.93000 * 359.97438 * 20 19 18 22 22 O 1.35450 * 119.15820 * 179.97438 * 21 20 19 23 23 C 1.42901 * 116.99875 * 0.02562 * 22 21 20 24 24 N 1.32287 * 121.68241 * 359.97438 * 21 20 19 25 25 H 1.07992 * 120.00425 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99989 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00378 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46610 * 5.00390 * 3 2 1 29 29 H 1.08996 * 109.46748 * 245.00554 * 3 2 1 30 30 H 1.09000 * 109.46584 * 29.99938 * 5 4 3 31 31 H 1.08997 * 109.47235 * 150.00278 * 5 4 3 32 32 H 0.97007 * 119.99732 * 180.02562 * 9 8 6 33 33 H 0.97001 * 119.99179 * 5.07996 * 16 14 4 34 34 H 1.08001 * 120.77278 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.36890 * 180.23207 * 19 18 17 36 36 H 1.08998 * 109.46869 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.47322 * 299.99848 * 23 22 21 38 38 H 1.08998 * 109.47034 * 59.99934 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3436 2.4804 7 1 3.3039 3.8369 1.6367 8 6 2.5184 4.0667 3.6082 9 7 1.9591 3.4659 4.6357 10 14 2.8727 5.8995 3.6773 11 1 3.5014 6.3306 2.4028 12 1 1.6023 6.6420 3.8780 13 1 3.7954 6.1832 4.8057 14 6 4.2496 0.8662 0.9822 15 8 5.0218 0.8888 1.9210 16 7 4.6497 0.3755 -0.2076 17 6 5.9080 -0.2011 -0.3340 18 6 6.2920 -0.8074 -1.5308 19 6 7.5547 -1.3624 -1.6121 20 7 8.3554 -1.3073 -0.5579 21 6 7.9620 -0.7297 0.5654 22 8 8.8097 -0.6942 1.6213 23 6 10.0941 -1.2947 1.4425 24 7 6.7619 -0.1859 0.6838 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6211 1.4027 -0.9314 30 1 1.4888 1.6966 2.5459 31 1 3.0990 1.3603 3.2259 32 1 1.7296 3.9747 5.4290 33 1 4.0593 0.4247 -0.9756 34 1 5.6197 -0.8378 -2.3754 35 1 7.8851 -1.8360 -2.5247 36 1 10.6720 -1.1967 2.3615 37 1 9.9711 -2.3505 1.2011 38 1 10.6189 -0.7945 0.6286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296550444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:30 Heat of formation + Delta-G solvation = 42.139021 kcal Electronic energy + Delta-G solvation = -23091.811180 eV Core-core repulsion = 19551.516250 eV Total energy + Delta-G solvation = -3540.294930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23991 -39.68605 -38.13884 -35.92862 -34.93220 -33.16399 -32.92000 -32.04309 -30.56932 -27.62100 -27.44576 -25.66441 -24.45599 -23.55435 -22.41612 -20.23417 -19.69755 -19.06254 -17.63825 -17.02930 -16.53945 -16.41720 -16.28567 -15.51957 -15.06282 -15.00899 -14.53658 -14.46435 -14.02864 -13.81821 -13.73762 -13.21492 -12.80564 -12.31060 -12.00008 -11.84973 -11.54098 -11.30852 -11.21293 -11.06539 -10.96064 -10.86325 -10.60575 -10.16965 -9.67521 -9.60524 -9.44170 -9.27066 -8.65207 -8.55003 -8.41385 -7.71307 -6.02303 -4.06792 1.11632 1.25771 2.31084 2.50355 3.08231 3.31775 3.39939 3.43823 3.69099 4.10024 4.11738 4.31765 4.49689 4.63480 4.95335 5.11418 5.12575 5.19307 5.24237 5.31160 5.32606 5.41006 5.49279 5.52934 5.86717 5.92167 6.08616 6.39128 6.66159 6.72818 6.84821 6.92780 7.23522 7.35625 7.48975 7.60100 7.94804 8.23872 8.26864 8.53953 8.93996 9.22156 9.58459 11.05765 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.004719 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.590496 B = 5931.847733 C = 7397.843371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.602 5.602 5 C 0.262 3.738 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.682 3.318 15 O -0.509 6.509 16 N -0.664 5.664 17 C 0.469 3.531 18 C -0.313 4.313 19 C 0.202 3.798 20 N -0.602 5.602 21 C 0.527 3.473 22 O -0.285 6.285 23 C 0.047 3.953 24 N -0.512 5.512 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.413 0.587 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 -10.858 -15.742 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.338 5.338 5 C 0.143 3.857 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.383 3.617 15 O -0.377 6.377 16 N -0.315 5.315 17 C 0.226 3.774 18 C -0.340 4.340 19 C 0.039 3.961 20 N -0.336 5.336 21 C 0.223 3.777 22 O -0.185 6.185 23 C -0.049 4.049 24 N -0.244 5.244 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.252 0.748 34 H 0.165 0.835 35 H 0.188 0.812 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.962 -10.581 -13.624 18.602 hybrid contribution -0.691 0.905 -1.137 1.609 sum 6.271 -9.677 -14.761 18.731 Atomic orbital electron populations 1.23832 0.95792 1.01876 0.99937 1.23445 0.96552 0.98880 1.00452 1.20551 0.93300 0.95841 0.89115 1.47675 1.08489 1.63312 1.14310 1.19265 0.95292 0.93634 0.77505 1.21481 1.40434 0.93319 1.01345 0.92413 1.24912 0.95046 0.98743 0.95285 1.69941 1.42100 1.36053 1.05168 0.86448 0.77847 0.84979 0.78159 1.19869 1.21013 1.20849 1.16124 0.83622 0.79660 0.82309 1.91079 1.51545 1.57464 1.37630 1.43287 1.14093 1.60267 1.13857 1.18055 0.84940 0.86400 0.88024 1.21999 1.01402 1.11124 0.99519 1.22545 0.88015 0.90238 0.95252 1.68063 1.38560 1.25551 1.01392 1.20496 0.86184 0.86433 0.84580 1.86160 1.25865 1.74196 1.32302 1.22945 0.80661 0.98165 1.03107 1.67534 1.01823 1.23771 1.31281 0.88152 0.88711 0.87822 0.88822 0.91719 0.94619 0.93632 0.92766 0.74828 0.83481 0.81184 0.88124 0.92082 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 14.32 29.02 0.42 -1.73 16 2 C -0.17 -2.32 9.85 -36.02 -0.35 -2.67 16 3 C 0.14 2.08 5.66 -5.19 -0.03 2.05 16 4 N -0.60 -12.65 2.44 -182.19 -0.44 -13.10 16 5 C 0.26 6.86 5.16 -5.19 -0.03 6.83 16 6 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 7 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 10 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.68 14.85 8.23 -86.92 -0.72 14.13 16 15 O -0.51 -13.78 14.23 5.30 0.08 -13.71 16 16 N -0.66 -10.75 5.26 -15.68 -0.08 -10.83 16 17 C 0.47 7.70 7.45 -154.48 -1.15 6.55 16 18 C -0.31 -3.53 10.03 -39.12 -0.39 -3.92 16 19 C 0.20 2.17 11.29 -17.29 -0.20 1.98 16 20 N -0.60 -8.44 9.22 -14.81 -0.14 -8.57 16 21 C 0.53 9.26 8.49 -91.29 -0.77 8.49 16 22 O -0.28 -4.84 10.55 -18.04 -0.19 -5.03 16 23 C 0.05 0.52 10.36 101.05 1.05 1.57 16 24 N -0.51 -10.35 8.07 -13.89 -0.11 -10.46 16 25 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 26 H 0.09 0.99 8.06 -52.48 -0.42 0.57 16 27 H 0.10 1.33 8.06 -52.48 -0.42 0.91 16 28 H 0.09 1.49 7.72 -51.93 -0.40 1.08 16 29 H 0.06 0.77 6.29 -51.93 -0.33 0.44 16 30 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.05 1.37 7.42 -51.93 -0.39 0.98 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.41 4.85 6.42 -40.82 -0.26 4.59 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 336.03 15.07 5.06 5.06 Total: -1.00 -37.43 336.03 -7.42 -44.85 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.71 Total: 1.00 kcal Atomic # 6 Polarization: 22.26 SS G_CDS: -2.60 Total: 19.66 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -0.04 Total: -68.93 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.12 Total: -18.74 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.43 -7.42 -44.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296550444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.986 kcal (2) G-P(sol) polarization free energy of solvation -37.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds