Wall clock time and date at job start Tue Mar 31 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50709 * 119.99963 * 2 1 4 4 N 1.46493 * 109.46974 * 125.00359 * 3 2 1 5 5 C 1.46507 * 120.00018 * 269.99915 * 4 3 2 6 6 C 1.50699 * 109.47057 * 270.00592 * 5 4 3 7 7 H 1.08004 * 119.99737 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00025 * 179.97438 * 6 5 4 9 9 N 1.31506 * 119.99835 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00048 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46925 * 119.99725 * 10 8 6 13 13 H 1.48493 * 109.47274 * 240.00185 * 10 8 6 14 14 C 1.34774 * 120.00117 * 90.00249 * 4 3 2 15 15 O 1.21576 * 120.00211 * 179.97438 * 14 4 3 16 16 N 1.34778 * 120.00359 * 359.97438 * 14 4 3 17 17 C 1.38987 * 120.00226 * 185.07904 * 16 14 4 18 18 C 1.39551 * 120.48749 * 174.87166 * 17 16 14 19 19 C 1.38163 * 118.45738 * 179.72914 * 18 17 16 20 20 N 1.32499 * 119.26021 * 0.24903 * 19 18 17 21 21 C 1.32302 * 120.93000 * 359.97438 * 20 19 18 22 22 O 1.35450 * 119.15820 * 179.97438 * 21 20 19 23 23 C 1.42901 * 116.99875 * 0.02562 * 22 21 20 24 24 N 1.32287 * 121.68241 * 359.97438 * 21 20 19 25 25 H 1.07992 * 120.00425 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99989 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00378 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46610 * 5.00390 * 3 2 1 29 29 H 1.08996 * 109.46748 * 245.00554 * 3 2 1 30 30 H 1.09000 * 109.46584 * 29.99938 * 5 4 3 31 31 H 1.08997 * 109.47235 * 150.00278 * 5 4 3 32 32 H 0.97007 * 119.99732 * 180.02562 * 9 8 6 33 33 H 0.97001 * 119.99179 * 5.07996 * 16 14 4 34 34 H 1.08001 * 120.77278 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.36890 * 180.23207 * 19 18 17 36 36 H 1.08998 * 109.46869 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.47322 * 299.99848 * 23 22 21 38 38 H 1.08998 * 109.47034 * 59.99934 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1313 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3436 2.4804 7 1 3.3039 3.8369 1.6367 8 6 2.5184 4.0667 3.6082 9 7 1.9591 3.4659 4.6357 10 14 2.8727 5.8995 3.6773 11 1 3.5014 6.3306 2.4028 12 1 1.6023 6.6420 3.8780 13 1 3.7954 6.1832 4.8057 14 6 4.2496 0.8662 0.9822 15 8 5.0218 0.8888 1.9210 16 7 4.6497 0.3755 -0.2076 17 6 5.9080 -0.2011 -0.3340 18 6 6.2920 -0.8074 -1.5308 19 6 7.5547 -1.3624 -1.6121 20 7 8.3554 -1.3073 -0.5579 21 6 7.9620 -0.7297 0.5654 22 8 8.8097 -0.6942 1.6213 23 6 10.0941 -1.2947 1.4425 24 7 6.7619 -0.1859 0.6838 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6211 1.4027 -0.9314 30 1 1.4888 1.6966 2.5459 31 1 3.0990 1.3603 3.2259 32 1 1.7296 3.9747 5.4290 33 1 4.0593 0.4247 -0.9756 34 1 5.6197 -0.8378 -2.3754 35 1 7.8851 -1.8360 -2.5247 36 1 10.6720 -1.1967 2.3615 37 1 9.9711 -2.3505 1.2011 38 1 10.6189 -0.7945 0.6286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296550444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:29 Heat of formation + Delta-G solvation = 13.218838 kcal Electronic energy + Delta-G solvation = -23093.065254 eV Core-core repulsion = 19551.516250 eV Total energy + Delta-G solvation = -3541.549003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.42018 -41.15119 -39.30949 -37.38275 -36.37979 -35.04599 -34.12333 -33.62346 -31.74207 -29.47281 -28.41661 -27.02801 -25.91010 -24.85826 -23.99112 -21.61321 -20.91650 -20.25067 -19.04069 -18.62176 -18.24242 -17.76033 -17.44296 -16.81804 -16.53094 -16.36486 -15.96150 -15.67547 -15.47518 -15.13512 -14.73135 -14.52365 -14.39783 -14.13059 -13.33491 -13.13291 -12.93194 -12.86268 -12.71989 -12.60345 -12.27592 -12.23988 -12.19717 -11.99584 -11.66072 -11.25976 -10.73595 -10.64220 -10.34253 -9.95879 -9.73200 -9.40242 -8.21703 -6.35933 0.00315 0.23498 1.15719 1.35516 1.39122 1.45876 1.50233 1.83474 2.17522 2.38984 2.89434 2.91041 3.08434 3.20395 3.67299 3.87744 4.03064 4.20679 4.32849 4.34770 4.40584 4.41627 4.48677 4.69408 4.77985 4.93400 5.01468 5.05500 5.19063 5.41440 5.49452 5.55375 5.71392 5.75702 5.91492 6.01983 6.06279 6.29029 6.72830 6.88718 7.25211 7.32107 7.63358 8.85553 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.004719 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.590496 B = 5931.847733 C = 7397.843371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.188 4.188 3 C 0.132 3.868 4 N -0.606 5.606 5 C 0.282 3.718 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.966 3.034 11 H -0.269 1.269 12 H -0.266 1.266 13 H -0.285 1.285 14 C 0.682 3.318 15 O -0.576 6.576 16 N -0.646 5.646 17 C 0.434 3.566 18 C -0.280 4.280 19 C 0.205 3.795 20 N -0.593 5.593 21 C 0.504 3.496 22 O -0.323 6.323 23 C 0.044 3.956 24 N -0.578 5.578 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.030 0.970 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.434 0.566 34 H 0.199 0.801 35 H 0.229 0.771 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 -11.339 -19.335 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.010 3.990 4 N -0.341 5.341 5 C 0.160 3.840 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.191 1.191 13 H -0.211 1.211 14 C 0.383 3.617 15 O -0.450 6.450 16 N -0.300 5.300 17 C 0.193 3.807 18 C -0.306 4.306 19 C 0.043 3.957 20 N -0.327 5.327 21 C 0.201 3.799 22 O -0.224 6.224 23 C -0.050 4.050 24 N -0.311 5.311 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.048 0.952 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.277 0.723 34 H 0.217 0.783 35 H 0.246 0.754 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.908 -11.094 -17.325 21.702 hybrid contribution -0.650 0.942 -0.112 1.150 sum 6.258 -10.153 -17.438 21.126 Atomic orbital electron populations 1.24063 0.95458 1.03001 0.97546 1.23300 0.96904 0.97983 1.02529 1.20850 0.92845 0.96927 0.88399 1.47494 1.09490 1.62937 1.14174 1.18639 0.93905 0.92416 0.79030 1.21738 1.40390 0.94430 1.01444 0.92936 1.25814 0.94689 1.03632 0.94819 1.70056 1.42893 1.37977 1.05774 0.85388 0.78230 0.79256 0.78018 1.19295 1.19072 1.21084 1.16310 0.83066 0.79197 0.83161 1.91031 1.53408 1.60107 1.40416 1.42785 1.14807 1.59885 1.12480 1.18571 0.84484 0.88207 0.89415 1.22502 1.02065 1.07663 0.98405 1.23622 0.87314 0.88959 0.95816 1.68186 1.38951 1.24479 1.01087 1.20605 0.85912 0.87700 0.85728 1.86094 1.27742 1.75126 1.33486 1.23221 0.78782 0.98388 1.04653 1.67245 1.03728 1.25753 1.34375 0.88022 0.86604 0.87138 0.89550 0.87914 0.95203 0.98776 0.92421 0.72282 0.78348 0.75436 0.86035 0.91238 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 14.32 67.79 0.97 -2.65 16 2 C -0.19 -4.72 9.85 25.66 0.25 -4.47 16 3 C 0.13 3.91 5.66 85.64 0.48 4.39 16 4 N -0.61 -26.24 2.44 -848.59 -2.07 -28.31 16 5 C 0.28 15.54 5.16 85.63 0.44 15.98 16 6 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.56 5.46 84.66 0.46 1.02 16 9 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 10 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 14 C 0.68 30.79 8.23 179.05 1.47 32.26 16 15 O -0.58 -33.40 14.23 -3.96 -0.06 -33.45 16 16 N -0.65 -20.52 5.26 -321.78 -1.69 -22.21 16 17 C 0.43 13.89 7.45 133.03 0.99 14.88 16 18 C -0.28 -5.20 10.03 22.57 0.23 -4.97 16 19 C 0.21 3.53 11.29 84.57 0.95 4.48 16 20 N -0.59 -15.54 9.22 -313.73 -2.89 -18.43 16 21 C 0.50 18.07 8.49 180.58 1.53 19.60 16 22 O -0.32 -11.50 10.55 -87.48 -0.92 -12.42 16 23 C 0.04 0.97 10.36 113.37 1.17 2.14 16 24 N -0.58 -24.18 8.07 -310.84 -2.51 -26.69 16 25 H 0.10 2.23 7.84 -2.91 -0.02 2.21 16 26 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 27 H 0.11 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.09 2.69 7.72 -2.39 -0.02 2.67 16 29 H 0.10 2.19 6.29 -2.39 -0.02 2.18 16 30 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 31 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 32 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 33 H 0.43 9.15 6.42 -92.71 -0.59 8.56 16 34 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 38 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 Total: -1.00 -90.16 336.03 1.86 -88.30 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.49 Total: 10.88 kcal Atomic # 6 Polarization: 41.87 SS G_CDS: 9.21 Total: 51.08 kcal Atomic # 7 Polarization: -143.56 SS G_CDS: -8.88 Total: -152.43 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.98 Total: -45.88 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -90.16 1.86 -88.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296550444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.517 kcal (2) G-P(sol) polarization free energy of solvation -90.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds