Wall clock time and date at job start Tue Mar 31 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99899 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99726 * 3 2 1 5 5 C 1.46499 * 119.99934 * 269.99675 * 4 3 2 6 6 C 1.50700 * 109.46912 * 270.00300 * 5 4 3 7 7 H 1.08000 * 120.00441 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31508 * 120.00311 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99828 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46835 * 89.99949 * 10 8 6 12 12 H 1.48496 * 109.47315 * 210.00305 * 10 8 6 13 13 H 1.48505 * 109.46996 * 330.00604 * 10 8 6 14 14 C 1.34777 * 120.00001 * 90.00069 * 4 3 2 15 15 O 1.21583 * 119.99929 * 179.97438 * 14 4 3 16 16 N 1.34777 * 120.00128 * 359.97438 * 14 4 3 17 17 C 1.39201 * 119.99705 * 180.27974 * 16 14 4 18 18 N 1.32808 * 120.54992 * 359.71776 * 17 16 14 19 19 C 1.31805 * 120.75952 * 179.97438 * 18 17 16 20 20 N 1.31732 * 121.94072 * 0.02562 * 19 18 17 21 21 C 1.32529 * 121.03315 * 359.97438 * 20 19 18 22 22 C 1.38618 * 119.11994 * 359.73745 * 21 20 19 23 23 O 1.35995 * 120.88170 * 180.25167 * 22 21 20 24 24 C 1.42908 * 116.99876 * 0.27848 * 23 22 21 25 25 H 1.08005 * 119.99659 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00388 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99710 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46723 * 4.99296 * 3 2 1 29 29 H 1.09005 * 109.46546 * 244.99420 * 3 2 1 30 30 H 1.08996 * 109.47092 * 30.00115 * 5 4 3 31 31 H 1.08998 * 109.47416 * 150.00325 * 5 4 3 32 32 H 0.97001 * 120.00438 * 179.97438 * 9 8 6 33 33 H 0.97001 * 119.99727 * 359.97438 * 16 14 4 34 34 H 1.07994 * 119.02639 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.43687 * 180.02562 * 21 20 19 36 36 H 1.08998 * 109.46751 * 299.99853 * 24 23 22 37 37 H 1.08993 * 109.46960 * 59.99423 * 24 23 22 38 38 H 1.09000 * 109.46841 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3039 3.8370 1.6366 8 6 2.5192 4.0668 3.6083 9 7 2.7677 5.3573 3.6565 10 14 1.7245 3.2136 5.0679 11 1 2.7805 2.7225 5.9892 12 1 0.8485 4.1738 5.7859 13 1 0.9129 2.0659 4.5886 14 6 4.2496 0.8662 0.9825 15 8 5.0218 0.8889 1.9214 16 7 4.6497 0.3754 -0.2073 17 6 5.9451 -0.1110 -0.3594 18 7 6.7974 -0.0914 0.6588 19 6 8.0248 -0.5512 0.5195 20 7 8.4585 -1.0453 -0.6221 21 6 7.6703 -1.1005 -1.6860 22 6 6.3687 -0.6341 -1.5863 23 8 5.5276 -0.6784 -2.6540 24 6 6.0466 -1.2292 -3.8663 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1316 0.0894 29 1 2.6214 1.4025 -0.9314 30 1 1.4886 1.6968 2.5458 31 1 3.0988 1.3606 3.2260 32 1 2.5388 5.8661 4.4501 33 1 4.0335 0.3569 -0.9562 34 1 8.6945 -0.5222 1.3662 35 1 8.0357 -1.5079 -2.6171 36 1 6.9049 -0.6425 -4.1937 37 1 6.3557 -2.2601 -3.6939 38 1 5.2752 -1.2046 -4.6360 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297324493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:58 Heat of formation + Delta-G solvation = 39.088171 kcal Electronic energy + Delta-G solvation = -23361.161947 eV Core-core repulsion = 19820.734722 eV Total energy + Delta-G solvation = -3540.427225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42911 -39.61128 -38.56369 -36.08759 -35.05238 -33.15631 -32.71249 -32.04364 -30.51401 -28.15932 -27.91954 -25.73868 -24.27911 -23.75656 -22.21790 -20.22475 -19.73665 -18.74467 -18.09005 -17.51196 -16.95071 -16.83702 -16.32448 -15.74006 -15.14507 -14.96434 -14.53321 -14.26393 -14.16025 -13.91326 -13.70058 -13.32640 -13.04787 -12.37029 -12.31863 -11.95751 -11.85528 -11.65464 -11.47401 -11.14299 -11.12393 -10.93023 -10.51560 -10.14783 -9.75460 -9.73230 -9.52979 -9.32354 -8.76713 -8.56486 -8.22288 -7.74118 -6.06431 -4.05220 0.97837 1.11749 2.27310 2.77849 2.83952 3.31907 3.37720 3.40178 3.62281 4.04040 4.08469 4.19678 4.23899 4.41912 4.56928 4.77461 4.82635 4.92765 5.08939 5.16664 5.25817 5.27252 5.40239 5.43448 5.87468 6.03924 6.11794 6.28134 6.46496 6.66455 6.78243 6.81194 6.91110 7.01008 7.24743 7.42613 7.62820 8.16259 8.43069 8.49533 8.96633 9.13415 9.53670 11.06981 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.004748 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.133687 B = 5895.477899 C = 6948.082460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 C 0.135 3.865 4 N -0.598 5.598 5 C 0.233 3.767 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.690 3.310 15 O -0.517 6.517 16 N -0.660 5.660 17 C 0.421 3.579 18 N -0.474 5.474 19 C 0.293 3.707 20 N -0.523 5.523 21 C 0.084 3.916 22 C -0.025 4.025 23 O -0.312 6.312 24 C 0.027 3.973 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.416 0.584 34 H 0.201 0.799 35 H 0.168 0.832 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.383 -14.957 -15.746 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C 0.011 3.989 4 N -0.333 5.333 5 C 0.113 3.887 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.391 3.609 15 O -0.387 6.387 16 N -0.311 5.311 17 C 0.176 3.824 18 N -0.195 5.195 19 C 0.004 3.996 20 N -0.241 5.241 21 C -0.080 4.080 22 C -0.079 4.079 23 O -0.223 6.223 24 C -0.068 4.068 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.255 0.745 34 H 0.217 0.783 35 H 0.185 0.815 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.203 -14.590 -14.087 20.532 hybrid contribution -1.117 -0.408 -0.513 1.295 sum 2.086 -14.998 -14.600 21.034 Atomic orbital electron populations 1.23849 0.95759 1.01928 1.00018 1.23463 0.96570 0.98916 1.00374 1.20590 0.93319 0.95831 0.89183 1.47263 1.08885 1.63416 1.13718 1.19616 0.94791 0.94990 0.79337 1.21344 1.41157 0.91151 1.03151 0.90744 1.24827 0.95273 0.94700 0.98061 1.69893 1.47792 1.06620 1.29268 0.86872 0.79879 0.79644 0.83430 1.19822 1.21106 1.19021 1.15979 0.83350 0.79352 0.82265 1.91031 1.51634 1.58252 1.37737 1.43068 1.10587 1.62614 1.14877 1.17979 0.86689 0.90944 0.86758 1.68651 1.03783 1.18350 1.28739 1.24875 0.89806 0.90185 0.94695 1.68257 1.37442 1.18294 1.00101 1.23032 0.88351 0.97847 0.98728 1.20140 0.93092 1.05803 0.88821 1.86034 1.38319 1.79318 1.18657 1.23099 1.01242 0.98087 0.84419 0.88661 0.88078 0.87760 0.88582 0.91228 0.94911 0.94332 0.92569 0.74533 0.78276 0.81507 0.92432 0.92496 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 14.32 29.01 0.42 -1.68 16 2 C -0.17 -2.30 9.85 -36.02 -0.35 -2.65 16 3 C 0.13 2.10 5.61 -5.19 -0.03 2.07 16 4 N -0.60 -12.40 2.44 -182.19 -0.44 -12.85 16 5 C 0.23 5.72 4.23 -5.19 -0.02 5.69 16 6 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 7 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 8 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 9 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 10 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 11 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.69 14.84 8.24 -86.92 -0.72 14.12 16 15 O -0.52 -13.34 14.22 5.29 0.08 -13.27 16 16 N -0.66 -11.24 5.25 -15.54 -0.08 -11.32 16 17 C 0.42 7.05 7.48 -154.17 -1.15 5.90 16 18 N -0.47 -8.74 8.03 -13.61 -0.11 -8.85 16 19 C 0.29 4.36 12.28 -92.20 -1.13 3.22 16 20 N -0.52 -7.06 10.43 -14.55 -0.15 -7.21 16 21 C 0.08 0.97 10.30 -17.11 -0.18 0.79 16 22 C -0.02 -0.32 6.75 -38.80 -0.26 -0.58 16 23 O -0.31 -3.27 9.86 -19.72 -0.19 -3.46 16 24 C 0.03 0.16 9.84 101.05 0.99 1.15 16 25 H 0.10 0.96 8.06 -52.48 -0.42 0.53 16 26 H 0.10 1.16 7.84 -52.49 -0.41 0.75 16 27 H 0.10 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.10 1.54 7.72 -51.93 -0.40 1.14 16 29 H 0.07 0.92 6.36 -51.93 -0.33 0.58 16 30 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 31 H 0.04 1.02 6.85 -51.93 -0.36 0.66 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.42 5.78 5.88 -40.82 -0.24 5.54 16 34 H 0.20 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.17 1.28 6.46 -52.49 -0.34 0.94 16 36 H 0.06 0.28 7.70 -51.93 -0.40 -0.12 16 37 H 0.06 0.26 7.72 -51.93 -0.40 -0.14 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -36.60 329.07 -7.25 -43.85 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.53 Total: 3.65 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -2.87 Total: 14.54 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.01 Total: -67.24 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.12 Total: -16.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.60 -7.25 -43.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297324493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.937 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds