Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99843 * 2 1 4 4 H 1.48506 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47165 * 300.00053 * 3 2 1 6 6 H 1.48505 * 109.47061 * 59.99895 * 3 2 1 7 7 C 1.39926 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99977 * 197.90140 * 7 2 1 9 9 C 1.41415 * 119.99914 * 17.90044 * 7 2 1 10 10 C 1.40782 * 120.20592 * 204.44633 * 9 7 2 11 11 C 1.37645 * 119.89788 * 179.97438 * 10 9 7 12 12 C 1.38522 * 120.32070 * 0.27423 * 11 10 9 13 13 C 1.39299 * 120.42523 * 359.44856 * 12 11 10 14 14 N 1.39677 * 119.95268 * 180.27647 * 13 12 11 15 15 C 1.46499 * 120.00006 * 0.27241 * 14 13 12 16 16 C 1.50701 * 109.46876 * 179.97438 * 15 14 13 17 17 C 1.37790 * 120.11270 * 259.72202 * 16 15 14 18 18 C 1.38785 * 120.67049 * 179.76936 * 17 16 15 19 19 C 1.36664 * 120.52704 * 0.50834 * 18 17 16 20 20 C 1.39591 * 119.76058 * 359.75543 * 19 18 17 21 21 C 1.46500 * 134.03201 * 180.02562 * 20 19 18 22 22 C 1.34233 * 106.99815 * 179.97438 * 21 20 19 23 23 N 1.36837 * 109.93929 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.06572 * 179.97438 * 23 22 21 25 25 C 1.37697 * 109.87522 * 0.02562 * 23 22 21 26 26 C 1.38315 * 120.09165 * 0.55112 * 13 12 11 27 27 H 0.96996 * 120.00035 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.05278 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.84019 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.79007 * 179.72147 * 12 11 10 31 31 H 0.97001 * 119.99871 * 180.27613 * 14 13 12 32 32 H 1.08997 * 109.47437 * 299.99566 * 15 14 13 33 33 H 1.09000 * 109.47180 * 60.00181 * 15 14 13 34 34 H 1.08007 * 119.66244 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.73985 * 180.23730 * 18 17 16 36 36 H 1.07997 * 120.11899 * 179.76721 * 19 18 17 37 37 H 1.07998 * 126.49735 * 0.02562 * 21 20 19 38 38 H 1.07997 * 125.03204 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.16263 * 179.74752 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2345 0.2869 9 6 1.3522 -2.4067 -0.3775 10 6 1.8257 -3.6500 0.0827 11 6 1.1823 -4.8090 -0.2877 12 6 0.0735 -4.7591 -1.1164 13 6 -0.4099 -3.5358 -1.5750 14 7 -1.5322 -3.4965 -2.4056 15 6 -2.2036 -4.7409 -2.7890 16 6 -3.3765 -4.4246 -3.6809 17 6 -4.6530 -4.4029 -3.1626 18 6 -5.7410 -4.1083 -3.9723 19 6 -5.5656 -3.8445 -5.3018 20 6 -4.2816 -3.8664 -5.8490 21 6 -3.7432 -3.6383 -7.1923 22 6 -2.4127 -3.7979 -7.1140 23 7 -2.0547 -4.1090 -5.8305 24 1 -1.1471 -4.2709 -5.5288 25 6 -3.1747 -4.1590 -5.0311 26 6 0.2233 -2.3604 -1.2136 27 1 -0.4850 0.8400 -0.0004 28 1 2.6921 -3.6943 0.7262 29 1 1.5466 -5.7623 0.0656 30 1 -0.4221 -5.6742 -1.4054 31 1 -1.8670 -2.6454 -2.7286 32 1 -1.5028 -5.3821 -3.3236 33 1 -2.5560 -5.2542 -1.8944 34 1 -4.8080 -4.6132 -2.1146 35 1 -6.7346 -4.0917 -3.5495 36 1 -6.4173 -3.6198 -5.9266 37 1 -4.3093 -3.3883 -8.0773 38 1 -1.7264 -3.6958 -7.9416 39 1 -0.1481 -1.4116 -1.5718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313404919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = 59.536235 kcal Electronic energy + Delta-G solvation = -21686.611889 eV Core-core repulsion = 18557.920622 eV Total energy + Delta-G solvation = -3128.691267 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.17142 -39.66479 -38.10626 -36.58259 -35.20557 -33.18380 -31.36024 -30.84593 -29.83923 -29.23229 -27.16187 -26.22099 -23.26050 -22.76190 -22.59009 -21.74142 -21.15352 -19.10917 -18.80738 -17.72183 -17.00916 -16.61010 -16.51203 -16.15063 -15.93350 -15.53119 -15.25613 -14.72837 -14.52861 -14.44551 -14.16036 -13.87988 -13.81184 -13.42330 -13.33955 -12.92894 -12.75467 -12.55177 -12.52811 -12.39652 -12.11290 -11.78047 -11.54210 -11.34033 -11.10600 -10.61937 -10.52922 -9.27197 -9.15141 -8.64370 -8.62349 -7.94987 -6.33834 0.11934 0.70855 1.06034 1.31338 1.37088 1.51815 1.55708 1.81283 2.21527 2.29817 2.72100 2.80435 3.14365 3.67170 3.83544 3.92560 4.05198 4.19014 4.35287 4.40695 4.49696 4.57848 4.68892 4.77191 4.79605 4.96235 4.97781 5.12164 5.12940 5.18542 5.27693 5.42116 5.56131 5.60045 5.66461 5.82604 5.85591 5.92908 6.08844 6.19749 6.23012 6.25810 6.56212 6.64223 6.91772 6.98418 7.04447 7.20863 8.36568 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.003841 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.324972 B = 7287.266672 C = 7848.903506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.038 3.962 3 Si 0.978 3.022 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.072 0.928 9 C 0.110 3.890 10 C -0.284 4.284 11 C -0.061 4.061 12 C -0.302 4.302 13 C 0.221 3.779 14 N -0.748 5.748 15 C 0.184 3.816 16 C -0.122 4.122 17 C -0.093 4.093 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.223 4.223 22 C 0.054 3.946 23 N -0.595 5.595 24 H 0.419 0.581 25 C 0.090 3.910 26 C -0.259 4.259 27 H 0.284 0.716 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.388 0.612 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.167 0.833 38 H 0.204 0.796 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 -5.941 -13.122 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.107 3.893 10 C -0.304 4.304 11 C -0.080 4.080 12 C -0.325 4.325 13 C 0.120 3.880 14 N -0.379 5.379 15 C 0.060 3.940 16 C -0.125 4.125 17 C -0.113 4.113 18 C -0.170 4.170 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.247 4.247 22 C -0.072 4.072 23 N -0.197 5.197 24 H 0.257 0.743 25 C -0.019 4.019 26 C -0.283 4.283 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.221 0.779 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.220 0.780 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.764 -6.035 -13.120 17.432 hybrid contribution 0.749 0.998 0.407 1.313 sum -9.015 -5.037 -12.713 16.379 Atomic orbital electron populations 1.69934 1.08964 1.30045 1.35951 1.26711 0.95427 1.04319 0.91255 0.85227 0.79525 0.76463 0.78878 1.18170 1.19014 1.19036 1.19837 0.98273 0.92727 1.42516 0.90976 1.17702 0.90899 0.92860 0.87871 1.21028 1.05774 0.93329 1.10297 1.20649 0.94618 0.96933 0.95789 1.20204 1.04527 0.94949 1.12771 1.17754 0.86679 0.93789 0.89793 1.44575 1.30621 1.07425 1.55325 1.19892 0.90950 0.86807 0.96333 1.18954 0.95327 1.07594 0.90616 1.21031 0.91127 0.98795 1.00309 1.20908 0.99449 1.02941 0.93741 1.20616 0.95381 0.97933 0.95381 1.19668 0.93245 1.06417 0.94724 1.22000 0.93917 1.12601 0.96220 1.22473 0.97129 1.00884 0.86702 1.42037 1.08311 1.61229 1.08145 0.74322 1.18281 0.87655 1.03708 0.92233 1.20632 1.03634 0.95351 1.08706 0.90515 0.89146 0.86297 0.86993 0.77908 0.92860 0.92117 0.84966 0.83554 0.83831 0.81577 0.77970 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.65 10.96 21.82 0.24 -44.41 16 2 C 0.04 1.97 5.14 85.25 0.44 2.40 16 3 Si 0.98 39.56 29.59 68.60 2.03 41.59 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 6 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.50 -28.39 9.05 23.46 0.21 -28.18 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.92 16 9 C 0.11 6.19 5.57 -21.31 -0.12 6.08 16 10 C -0.28 -14.63 9.79 22.75 0.22 -14.41 16 11 C -0.06 -2.78 10.02 22.20 0.22 -2.55 16 12 C -0.30 -13.32 9.32 22.59 0.21 -13.11 16 13 C 0.22 10.32 6.64 38.16 0.25 10.57 16 14 N -0.75 -28.74 5.72 -343.31 -1.96 -30.70 16 15 C 0.18 5.74 5.05 85.63 0.43 6.18 16 16 C -0.12 -3.46 5.26 -19.77 -0.10 -3.57 16 17 C -0.09 -2.38 9.64 22.29 0.21 -2.16 16 18 C -0.15 -3.33 9.97 22.03 0.22 -3.11 16 19 C -0.07 -1.66 10.05 22.23 0.22 -1.43 16 20 C -0.14 -3.45 6.37 -20.20 -0.13 -3.58 16 21 C -0.22 -4.58 11.08 23.51 0.26 -4.32 16 22 C 0.05 1.03 11.81 83.00 0.98 2.01 16 23 N -0.59 -14.09 6.07 -187.61 -1.14 -15.23 16 24 H 0.42 9.43 8.96 -92.71 -0.83 8.60 16 25 C 0.09 2.47 6.98 39.03 0.27 2.74 16 26 C -0.26 -14.04 8.53 22.86 0.20 -13.85 16 27 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 28 H 0.09 4.46 8.06 -2.91 -0.02 4.43 16 29 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.11 4.29 6.70 -2.91 -0.02 4.27 16 31 H 0.39 15.29 8.47 -92.71 -0.79 14.50 16 32 H 0.05 1.61 7.93 -2.39 -0.02 1.60 16 33 H 0.06 1.89 7.80 -2.39 -0.02 1.87 16 34 H 0.13 3.09 8.02 -2.91 -0.02 3.07 16 35 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.10 5.51 6.16 -2.91 -0.02 5.50 16 Total: -1.00 -65.57 332.55 2.65 -62.92 By element: Atomic # 1 Polarization: 46.65 SS G_CDS: -0.53 Total: 46.12 kcal Atomic # 6 Polarization: -64.29 SS G_CDS: 4.01 Total: -60.29 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -2.86 Total: -90.34 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -65.57 2.65 -62.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313404919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.456 kcal (2) G-P(sol) polarization free energy of solvation -65.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds