Wall clock time and date at job start Tue Mar 31 2020 07:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48492 * 109.47287 * 274.99119 * 3 2 1 5 5 H 1.48504 * 109.47077 * 34.99347 * 3 2 1 6 6 H 1.48497 * 109.46819 * 154.99261 * 3 2 1 7 7 C 1.39890 * 119.99485 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99924 * 147.62634 * 7 2 1 9 9 C 1.41153 * 120.00222 * 327.63010 * 7 2 1 10 10 C 1.40866 * 120.16468 * 157.92066 * 9 7 2 11 11 C 1.36376 * 119.82981 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16755 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83388 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00283 * 37.79562 * 13 12 11 15 15 O 1.21580 * 119.99811 * 356.69481 * 14 13 12 16 16 N 1.34771 * 120.00241 * 176.41810 * 14 13 12 17 17 C 1.46500 * 120.00262 * 180.27433 * 16 14 13 18 18 H 1.08999 * 110.01321 * 325.70414 * 17 16 14 19 19 C 1.54266 * 110.02813 * 87.09420 * 17 16 14 20 20 C 1.55015 * 104.13874 * 95.69179 * 19 17 16 21 21 C 1.54888 * 102.75293 * 37.94517 * 20 19 17 22 22 C 1.53877 * 110.03660 * 204.31428 * 17 16 14 23 23 H 1.08998 * 110.03639 * 121.43026 * 22 17 16 24 24 F 1.39907 * 110.02845 * 359.97438 * 22 17 16 25 25 C 1.39481 * 120.33031 * 0.24553 * 12 11 10 26 26 C 1.36371 * 120.16982 * 359.48779 * 25 12 11 27 27 H 0.97009 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.08848 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.91486 * 180.02562 * 11 10 9 30 30 H 0.97002 * 120.00140 * 217.79839 * 13 12 11 31 31 H 0.97005 * 119.99831 * 0.28037 * 16 14 13 32 32 H 1.09006 * 110.48392 * 214.35211 * 19 17 16 33 33 H 1.08997 * 110.48809 * 336.99678 * 19 17 16 34 34 H 1.08998 * 110.76037 * 279.63316 * 20 19 17 35 35 H 1.08996 * 110.90546 * 156.33376 * 20 19 17 36 36 H 1.09000 * 110.48849 * 203.37253 * 21 20 19 37 37 H 1.09006 * 110.59956 * 80.78478 * 21 20 19 38 38 H 1.08004 * 119.91013 * 179.74486 * 25 12 11 39 39 H 1.07997 * 120.08618 * 180.27356 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4970 2.6199 0.8029 6 1 3.5891 1.4119 0.5919 7 6 2.0081 -1.2115 -0.0005 8 1 2.9623 -1.2841 -0.5014 9 6 1.4668 -2.3393 0.6534 10 6 1.8845 -3.6352 0.2922 11 6 1.3566 -4.7200 0.9282 12 6 0.4051 -4.5487 1.9335 13 7 -0.1297 -5.6612 2.5779 14 6 0.6554 -6.7207 2.8565 15 8 1.8152 -6.7304 2.4921 16 7 0.1562 -7.7670 3.5438 17 6 1.0112 -8.9161 3.8519 18 1 1.7181 -9.0836 3.0393 19 6 1.7715 -8.6702 5.1715 20 6 0.9024 -9.3727 6.2458 21 6 0.4142 -10.6461 5.5115 22 6 0.1488 -10.1721 4.0676 23 1 0.4378 -10.9494 3.3603 24 9 -1.2049 -9.8570 3.9083 25 6 -0.0176 -3.2689 2.2927 26 6 0.5053 -2.1744 1.6695 27 1 -0.4850 0.8401 0.0004 28 1 2.6203 -3.7694 -0.4869 29 1 1.6762 -5.7141 0.6526 30 1 -1.0673 -5.6737 2.8262 31 1 -0.7692 -7.7593 3.8345 32 1 2.7637 -9.1195 5.1295 33 1 1.8437 -7.6022 5.3769 34 1 0.0588 -8.7445 6.5317 35 1 1.4999 -9.6353 7.1187 36 1 -0.5038 -11.0198 5.9650 37 1 1.1858 -11.4159 5.5245 38 1 -0.7578 -3.1444 3.0693 39 1 0.1803 -1.1839 1.9518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334680124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:50 Heat of formation + Delta-G solvation = -63.874876 kcal Electronic energy + Delta-G solvation = -22680.496858 eV Core-core repulsion = 19115.684859 eV Total energy + Delta-G solvation = -3564.811999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.96097 -39.93059 -37.98971 -36.94833 -34.37318 -33.52239 -32.78216 -29.53226 -29.05316 -28.44941 -27.64185 -24.76313 -22.03097 -21.25785 -20.90698 -20.25850 -19.90627 -18.18342 -17.32838 -17.21341 -16.62506 -15.80094 -15.33662 -15.15349 -14.79263 -14.53335 -14.12034 -13.97879 -13.82846 -13.59952 -13.05777 -12.64699 -12.38382 -12.03695 -11.96288 -11.71274 -11.49109 -11.33656 -11.23604 -11.10901 -10.99846 -10.91042 -10.84967 -10.48632 -10.15531 -9.68576 -9.56024 -9.10843 -8.89272 -8.63990 -7.49027 -7.07972 -6.82587 -4.21734 2.70279 3.01517 3.07303 3.09573 3.15640 3.23350 3.70758 3.92865 4.01418 4.12255 4.39163 4.55056 4.56133 4.74376 5.02822 5.11536 5.14311 5.27274 5.38083 5.48629 5.67804 5.72246 5.86970 5.97445 6.01804 6.24089 6.47609 6.67321 6.83093 6.91030 7.05437 7.15823 7.32879 7.37570 7.64581 7.93012 8.01344 8.08446 8.31833 8.55678 8.60993 8.89428 8.96577 9.18242 10.07142 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.042864 B = 0.002889 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.071698 B = 9690.260012 C = 9789.088985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.223 4.223 11 C -0.066 4.066 12 C -0.001 4.001 13 N -0.664 5.664 14 C 0.696 3.304 15 O -0.581 6.581 16 N -0.744 5.744 17 C 0.138 3.862 18 H 0.102 0.898 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.150 4.150 22 C 0.080 3.920 23 H 0.094 0.906 24 F -0.206 7.206 25 C -0.104 4.104 26 C -0.170 4.170 27 H 0.282 0.718 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.390 0.610 31 H 0.397 0.603 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -15.735 10.283 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.109 3.891 10 C -0.243 4.243 11 C -0.086 4.086 12 C -0.093 4.093 13 N -0.310 5.310 14 C 0.397 3.603 15 O -0.458 6.458 16 N -0.402 5.402 17 C 0.031 3.969 18 H 0.120 0.880 19 C -0.174 4.174 20 C -0.163 4.163 21 C -0.188 4.188 22 C 0.043 3.957 23 H 0.112 0.888 24 F -0.187 7.187 25 C -0.125 4.125 26 C -0.190 4.190 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.223 0.777 31 H 0.232 0.768 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.547 -15.594 9.915 18.544 hybrid contribution -0.747 0.796 0.251 1.120 sum -2.294 -14.798 10.166 18.100 Atomic orbital electron populations 1.69960 1.08050 1.29740 1.31698 1.25922 0.94345 1.01441 0.91587 0.86529 0.81544 0.80948 0.79148 1.19516 1.19947 1.18129 1.19480 1.05421 0.93788 1.30843 0.90093 1.17581 0.89792 0.91840 0.89918 1.20596 1.07039 0.92320 1.04332 1.20326 0.96489 0.98026 0.93799 1.16861 1.06957 0.84099 1.01428 1.42042 1.11436 1.15878 1.61662 1.15983 0.85055 0.80224 0.79030 1.90899 1.16220 1.80390 1.58311 1.45000 1.15201 1.18670 1.61321 1.21872 0.92190 0.84063 0.98781 0.88034 1.22851 0.98647 1.02205 0.93647 1.22551 0.99814 0.95856 0.98032 1.23003 1.02886 0.98927 0.93962 1.22598 0.76722 0.97397 0.98943 0.88815 1.92751 1.34852 1.94182 1.96912 1.20151 1.00947 0.91533 0.99833 1.20596 1.02543 0.96554 0.99332 0.90695 0.88815 0.87897 0.77664 0.76776 0.90390 0.90250 0.91181 0.90905 0.90067 0.89631 0.89371 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.74 11.78 55.54 0.65 -19.08 16 2 C 0.09 2.21 4.77 -17.34 -0.08 2.13 16 3 Si 0.89 18.46 29.66 -169.99 -5.04 13.41 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.47 -12.55 8.94 -37.86 -0.34 -12.89 16 8 H 0.08 2.11 8.02 -52.48 -0.42 1.69 16 9 C 0.11 3.04 5.57 -106.80 -0.60 2.44 16 10 C -0.22 -5.81 9.74 -39.26 -0.38 -6.19 16 11 C -0.07 -1.65 8.59 -39.79 -0.34 -1.99 16 12 C 0.00 -0.02 6.25 -83.57 -0.52 -0.55 16 13 N -0.66 -12.34 5.30 -14.10 -0.07 -12.42 16 14 C 0.70 12.76 8.37 -86.92 -0.73 12.03 16 15 O -0.58 -12.92 13.62 5.30 0.07 -12.85 16 16 N -0.74 -10.04 4.87 -57.58 -0.28 -10.32 16 17 C 0.14 1.57 3.23 -66.81 -0.22 1.35 16 18 H 0.10 1.29 7.58 -51.93 -0.39 0.90 16 19 C -0.13 -1.38 6.54 -25.00 -0.16 -1.54 16 20 C -0.13 -0.98 6.91 -24.67 -0.17 -1.15 16 21 C -0.15 -1.01 6.62 -25.07 -0.17 -1.18 16 22 C 0.08 0.70 4.68 -25.61 -0.12 0.58 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 F -0.21 -2.18 15.40 2.25 0.03 -2.15 16 25 C -0.10 -2.44 9.90 -39.79 -0.39 -2.83 16 26 C -0.17 -4.43 8.74 -39.26 -0.34 -4.78 16 27 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 28 H 0.09 2.33 8.06 -52.48 -0.42 1.90 16 29 H 0.10 2.54 6.45 -52.49 -0.34 2.20 16 30 H 0.39 5.88 8.84 -40.82 -0.36 5.51 16 31 H 0.40 4.61 7.38 -40.82 -0.30 4.31 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.11 2.81 6.52 -52.49 -0.34 2.46 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -30.81 326.87 -9.36 -40.18 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.09 Total: 12.87 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -4.56 Total: -14.57 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.30 Total: -41.82 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.03 Total: -2.15 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.04 Total: 13.41 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.81 -9.36 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334680124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.698 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds