Wall clock time and date at job start Tue Mar 31 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86800 * 120.00048 * 2 1 4 4 H 1.48492 * 109.47287 * 274.99119 * 3 2 1 5 5 H 1.48504 * 109.47077 * 34.99347 * 3 2 1 6 6 H 1.48497 * 109.46819 * 154.99261 * 3 2 1 7 7 C 1.39890 * 119.99485 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99924 * 147.62634 * 7 2 1 9 9 C 1.41153 * 120.00222 * 327.63010 * 7 2 1 10 10 C 1.40866 * 120.16468 * 157.92066 * 9 7 2 11 11 C 1.36376 * 119.82981 * 180.02562 * 10 9 7 12 12 C 1.39480 * 120.16755 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83388 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00283 * 37.79562 * 13 12 11 15 15 O 1.21580 * 119.99811 * 356.69481 * 14 13 12 16 16 N 1.34771 * 120.00241 * 176.41810 * 14 13 12 17 17 C 1.46500 * 120.00262 * 180.27433 * 16 14 13 18 18 H 1.08999 * 110.01321 * 325.70414 * 17 16 14 19 19 C 1.54266 * 110.02813 * 87.09420 * 17 16 14 20 20 C 1.55015 * 104.13874 * 95.69179 * 19 17 16 21 21 C 1.54888 * 102.75293 * 37.94517 * 20 19 17 22 22 C 1.53877 * 110.03660 * 204.31428 * 17 16 14 23 23 H 1.08998 * 110.03639 * 121.43026 * 22 17 16 24 24 F 1.39907 * 110.02845 * 359.97438 * 22 17 16 25 25 C 1.39481 * 120.33031 * 0.24553 * 12 11 10 26 26 C 1.36371 * 120.16982 * 359.48779 * 25 12 11 27 27 H 0.97009 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.08848 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.91486 * 180.02562 * 11 10 9 30 30 H 0.97002 * 120.00140 * 217.79839 * 13 12 11 31 31 H 0.97005 * 119.99831 * 0.28037 * 16 14 13 32 32 H 1.09006 * 110.48392 * 214.35211 * 19 17 16 33 33 H 1.08997 * 110.48809 * 336.99678 * 19 17 16 34 34 H 1.08998 * 110.76037 * 279.63316 * 20 19 17 35 35 H 1.08996 * 110.90546 * 156.33376 * 20 19 17 36 36 H 1.09000 * 110.48849 * 203.37253 * 21 20 19 37 37 H 1.09006 * 110.59956 * 80.78478 * 21 20 19 38 38 H 1.08004 * 119.91013 * 179.74486 * 25 12 11 39 39 H 1.07997 * 120.08618 * 180.27356 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4970 2.6199 0.8029 6 1 3.5891 1.4119 0.5919 7 6 2.0081 -1.2115 -0.0005 8 1 2.9623 -1.2841 -0.5014 9 6 1.4668 -2.3393 0.6534 10 6 1.8845 -3.6352 0.2922 11 6 1.3566 -4.7200 0.9282 12 6 0.4051 -4.5487 1.9335 13 7 -0.1297 -5.6612 2.5779 14 6 0.6554 -6.7207 2.8565 15 8 1.8152 -6.7304 2.4921 16 7 0.1562 -7.7670 3.5438 17 6 1.0112 -8.9161 3.8519 18 1 1.7181 -9.0836 3.0393 19 6 1.7715 -8.6702 5.1715 20 6 0.9024 -9.3727 6.2458 21 6 0.4142 -10.6461 5.5115 22 6 0.1488 -10.1721 4.0676 23 1 0.4378 -10.9494 3.3603 24 9 -1.2049 -9.8570 3.9083 25 6 -0.0176 -3.2689 2.2927 26 6 0.5053 -2.1744 1.6695 27 1 -0.4850 0.8401 0.0004 28 1 2.6203 -3.7694 -0.4869 29 1 1.6762 -5.7141 0.6526 30 1 -1.0673 -5.6737 2.8262 31 1 -0.7692 -7.7593 3.8345 32 1 2.7637 -9.1195 5.1295 33 1 1.8437 -7.6022 5.3769 34 1 0.0588 -8.7445 6.5317 35 1 1.4999 -9.6353 7.1187 36 1 -0.5038 -11.0198 5.9650 37 1 1.1858 -11.4159 5.5245 38 1 -0.7578 -3.1444 3.0693 39 1 0.1803 -1.1839 1.9518 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334680124.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:49 Heat of formation + Delta-G solvation = -82.233099 kcal Electronic energy + Delta-G solvation = -22681.292930 eV Core-core repulsion = 19115.684859 eV Total energy + Delta-G solvation = -3565.608071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.73144 -41.41756 -39.45095 -38.26771 -36.14213 -34.98727 -34.31287 -31.46353 -30.85171 -29.15622 -28.69591 -26.57511 -23.65948 -22.83644 -22.08846 -21.53198 -21.07333 -19.62581 -19.17262 -18.45434 -17.69643 -17.12909 -16.81881 -16.40660 -16.05632 -15.77824 -15.72833 -15.12182 -14.89812 -14.71572 -14.53754 -14.45893 -13.96053 -13.81945 -13.42454 -13.05206 -12.82843 -12.67207 -12.48327 -12.31778 -12.16632 -12.01818 -11.92354 -11.64522 -11.57760 -11.54118 -11.27282 -10.94185 -10.50887 -10.09633 -9.46785 -8.97561 -8.70104 -6.21465 0.87510 1.14670 1.38491 1.45497 1.56683 1.74704 2.17656 2.21765 2.67039 3.25328 3.35415 3.42074 3.71144 3.73330 3.97303 4.32199 4.37625 4.40377 4.41765 4.50515 4.54168 4.63063 4.87899 4.91460 5.03660 5.10170 5.14276 5.16246 5.20114 5.28587 5.35724 5.45912 5.57778 5.63038 5.77248 6.03766 6.12178 6.21374 6.37967 6.63464 6.90622 7.01272 7.14106 7.66853 8.22156 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.042864 B = 0.002889 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.071698 B = 9690.260012 C = 9789.088985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.052 3.948 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.506 4.506 8 H 0.074 0.926 9 C 0.083 3.917 10 C -0.243 4.243 11 C -0.076 4.076 12 C 0.011 3.989 13 N -0.659 5.659 14 C 0.695 3.305 15 O -0.622 6.622 16 N -0.724 5.724 17 C 0.127 3.873 18 H 0.085 0.915 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.140 4.140 22 C 0.082 3.918 23 H 0.115 0.885 24 F -0.216 7.216 25 C -0.101 4.101 26 C -0.188 4.188 27 H 0.294 0.706 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.410 0.590 31 H 0.409 0.591 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -16.677 11.899 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.080 3.920 10 C -0.263 4.263 11 C -0.097 4.097 12 C -0.082 4.082 13 N -0.307 5.307 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.382 5.382 17 C 0.021 3.979 18 H 0.103 0.897 19 C -0.173 4.173 20 C -0.157 4.157 21 C -0.177 4.177 22 C 0.046 3.954 23 H 0.133 0.867 24 F -0.197 7.197 25 C -0.122 4.122 26 C -0.208 4.208 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.247 0.753 31 H 0.247 0.753 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.435 -16.592 11.563 20.370 hybrid contribution -0.528 0.944 -0.222 1.104 sum -2.963 -15.647 11.342 19.551 Atomic orbital electron populations 1.69953 1.09366 1.31416 1.31554 1.26723 0.95086 1.04425 0.90518 0.85369 0.79623 0.76160 0.79660 1.18403 1.18469 1.18586 1.19686 1.05789 0.95321 1.32582 0.90760 1.17893 0.90816 0.92361 0.90901 1.20716 1.07827 0.92734 1.05057 1.20414 0.97255 0.97455 0.94543 1.16897 1.05563 0.85472 1.00300 1.41842 1.12511 1.14912 1.61406 1.16122 0.84456 0.80782 0.79036 1.90875 1.18134 1.81280 1.59969 1.44849 1.15972 1.17804 1.59577 1.22158 0.92520 0.84398 0.98843 0.89710 1.22809 0.99736 1.00765 0.93947 1.22529 0.99272 0.96020 0.97864 1.23002 1.04074 0.98703 0.91958 1.22743 0.75468 0.96099 1.01133 0.86732 1.92733 1.35667 1.94242 1.97099 1.20407 1.01006 0.90846 0.99917 1.20627 1.03210 0.97075 0.99857 0.89510 0.89023 0.88167 0.75334 0.75346 0.89376 0.93181 0.91819 0.89202 0.89042 0.87330 0.86033 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.20 11.78 21.82 0.26 -40.95 16 2 C 0.05 2.62 4.77 85.23 0.41 3.03 16 3 Si 0.97 37.94 29.66 68.60 2.03 39.97 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 5 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 7 C -0.51 -28.13 8.94 23.39 0.21 -27.93 16 8 H 0.07 4.06 8.02 -2.91 -0.02 4.03 16 9 C 0.08 4.68 5.57 -21.28 -0.12 4.56 16 10 C -0.24 -13.24 9.74 22.48 0.22 -13.03 16 11 C -0.08 -3.90 8.59 22.13 0.19 -3.71 16 12 C 0.01 0.53 6.25 38.57 0.24 0.77 16 13 N -0.66 -23.85 5.30 -316.79 -1.68 -25.53 16 14 C 0.70 25.21 8.37 179.06 1.50 26.71 16 15 O -0.62 -28.09 13.62 -3.97 -0.05 -28.14 16 16 N -0.72 -18.76 4.87 -454.36 -2.21 -20.97 16 17 C 0.13 2.74 3.23 45.72 0.15 2.88 16 18 H 0.08 2.13 7.58 -2.39 -0.02 2.12 16 19 C -0.13 -2.58 6.54 31.71 0.21 -2.38 16 20 C -0.12 -1.55 6.91 31.93 0.22 -1.33 16 21 C -0.14 -1.39 6.62 31.67 0.21 -1.18 16 22 C 0.08 1.21 4.68 31.32 0.15 1.36 16 23 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 24 F -0.22 -4.05 15.40 44.97 0.69 -3.35 16 25 C -0.10 -4.71 9.90 22.13 0.22 -4.49 16 26 C -0.19 -9.95 8.74 22.48 0.20 -9.75 16 27 H 0.29 13.43 8.30 -92.70 -0.77 12.66 16 28 H 0.09 4.83 8.06 -2.91 -0.02 4.81 16 29 H 0.10 5.11 6.45 -2.91 -0.02 5.09 16 30 H 0.41 11.55 8.84 -92.71 -0.82 10.73 16 31 H 0.41 8.75 7.38 -92.70 -0.68 8.06 16 32 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.27 8.04 -2.39 -0.02 1.25 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.81 8.11 -2.39 -0.02 0.79 16 37 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.10 5.31 6.52 -2.91 -0.02 5.29 16 Total: -1.00 -68.76 326.87 2.62 -66.14 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.41 Total: 37.31 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.99 Total: -24.48 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -3.64 Total: -87.45 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.69 Total: -3.35 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -68.76 2.62 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334680124.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.094 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds