Wall clock time and date at job start Tue Mar 31 2020 07:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86805 * 119.99780 * 2 1 4 4 H 1.48501 * 109.46727 * 240.00144 * 3 2 1 5 5 H 1.48497 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46906 * 120.00346 * 3 2 1 7 7 C 1.39891 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00008 * 175.56330 * 7 2 1 9 9 C 1.41161 * 119.99907 * 355.55420 * 7 2 1 10 10 C 1.40866 * 120.16299 * 214.78257 * 9 7 2 11 11 C 1.36369 * 119.82741 * 179.97438 * 10 9 7 12 12 C 1.39488 * 120.16943 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83404 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00512 * 35.28835 * 13 12 11 15 15 O 1.21590 * 119.99849 * 355.71360 * 14 13 12 16 16 N 1.34779 * 120.00539 * 175.43856 * 14 13 12 17 17 C 1.46494 * 120.00237 * 180.27668 * 16 14 13 18 18 H 1.09001 * 110.01923 * 34.29815 * 17 16 14 19 19 C 1.54273 * 110.03244 * 272.90978 * 17 16 14 20 20 C 1.54972 * 104.15879 * 217.13949 * 19 17 16 21 21 C 1.54893 * 102.77782 * 37.88365 * 20 19 17 22 22 C 1.53879 * 110.03308 * 155.69358 * 17 16 14 23 23 H 1.09002 * 110.02903 * 238.56884 * 22 17 16 24 24 F 1.39896 * 110.03048 * 359.97438 * 22 17 16 25 25 C 1.39477 * 120.33145 * 0.28985 * 12 11 10 26 26 C 1.36372 * 120.16786 * 359.45231 * 25 12 11 27 27 H 0.97001 * 119.99624 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.08859 * 359.96833 * 10 9 7 29 29 H 1.08000 * 119.92002 * 180.02562 * 11 10 9 30 30 H 0.96998 * 119.99885 * 215.29377 * 13 12 11 31 31 H 0.96998 * 119.99202 * 0.27518 * 16 14 13 32 32 H 1.08998 * 110.48622 * 335.77961 * 19 17 16 33 33 H 1.08991 * 110.48937 * 98.42900 * 19 17 16 34 34 H 1.09001 * 110.71822 * 279.57224 * 20 19 17 35 35 H 1.08995 * 110.76214 * 156.22326 * 20 19 17 36 36 H 1.08998 * 110.48574 * 203.40504 * 21 20 19 37 37 H 1.08996 * 110.59855 * 80.82104 * 21 20 19 38 38 H 1.08001 * 119.91418 * 179.73060 * 25 12 11 39 39 H 1.08000 * 120.08743 * 180.24989 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0729 9 6 1.3056 -2.4322 0.0937 10 6 1.8649 -3.5185 0.7946 11 6 1.1799 -4.6945 0.8818 12 6 -0.0717 -4.8230 0.2796 13 7 -0.7652 -6.0267 0.3734 14 6 -0.6826 -6.7663 1.4970 15 8 0.0580 -6.4225 2.3980 16 7 -1.4250 -7.8840 1.6243 17 6 -1.3397 -8.6846 2.8482 18 1 -1.1786 -8.0350 3.7085 19 6 -0.1879 -9.7045 2.7332 20 6 -0.7294 -10.9696 3.4459 21 6 -2.2211 -10.9855 3.0293 22 6 -2.6318 -9.4986 3.0367 23 1 -3.0975 -9.2446 3.9890 24 9 -3.5184 -9.2405 1.9857 25 6 -0.6294 -3.7535 -0.4208 26 6 0.0413 -2.5697 -0.5121 27 1 -0.4850 0.8401 -0.0004 28 1 2.8338 -3.4205 1.2617 29 1 1.6072 -5.5282 1.4192 30 1 -1.3078 -6.3330 -0.3700 31 1 -2.0158 -8.1581 0.9055 32 1 0.0282 -9.9195 1.6868 33 1 0.7029 -9.3326 3.2392 34 1 -0.6313 -10.8748 4.5273 35 1 -0.2187 -11.8634 3.0875 36 1 -2.8128 -11.5483 3.7512 37 1 -2.3361 -11.4080 2.0312 38 1 -1.5970 -3.8618 -0.8882 39 1 -0.3936 -1.7412 -1.0514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334680127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:52 Heat of formation + Delta-G solvation = -80.611722 kcal Electronic energy + Delta-G solvation = -22652.991498 eV Core-core repulsion = 19087.453735 eV Total energy + Delta-G solvation = -3565.537763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.74310 -41.46581 -39.46977 -38.31904 -36.11964 -35.01628 -34.33701 -31.47664 -30.74441 -29.14433 -28.57980 -26.56162 -23.58701 -22.81952 -21.96647 -21.72452 -21.25233 -19.67772 -19.16723 -18.41813 -17.56573 -17.14930 -16.82926 -16.44817 -16.02456 -15.78819 -15.57578 -15.37951 -14.93982 -14.56203 -14.51120 -14.38181 -13.99282 -13.58813 -13.35193 -13.19679 -12.90596 -12.77521 -12.54631 -12.46736 -12.08523 -11.99791 -11.83914 -11.60261 -11.58436 -11.39355 -11.24310 -11.02096 -10.66216 -10.11625 -9.45524 -8.68583 -8.48413 -6.31096 0.85624 1.15552 1.40102 1.49629 1.52557 1.69628 2.17373 2.25809 2.82566 3.24616 3.32203 3.43450 3.64260 3.69817 3.95704 4.30039 4.34613 4.36227 4.40541 4.54511 4.55926 4.63665 4.92825 4.95156 5.01615 5.13282 5.14117 5.16360 5.17032 5.33363 5.36817 5.44794 5.53582 5.69963 5.81504 6.03894 6.11722 6.24772 6.40903 6.69579 6.98384 7.02297 7.10986 7.62336 8.44208 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.041927 B = 0.002913 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.673113 B = 9608.718864 C = 9948.481152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.073 0.927 9 C 0.066 3.934 10 C -0.219 4.219 11 C -0.097 4.097 12 C 0.040 3.960 13 N -0.660 5.660 14 C 0.695 3.305 15 O -0.620 6.620 16 N -0.725 5.725 17 C 0.126 3.874 18 H 0.083 0.917 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.140 4.140 22 C 0.082 3.918 23 H 0.113 0.887 24 F -0.217 7.217 25 C -0.121 4.121 26 C -0.157 4.157 27 H 0.284 0.716 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.413 0.587 31 H 0.410 0.590 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 -19.713 3.461 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.530 4.530 8 H 0.091 0.909 9 C 0.064 3.936 10 C -0.239 4.239 11 C -0.117 4.117 12 C -0.054 4.054 13 N -0.307 5.307 14 C 0.396 3.604 15 O -0.500 6.500 16 N -0.383 5.383 17 C 0.020 3.980 18 H 0.101 0.899 19 C -0.174 4.174 20 C -0.151 4.151 21 C -0.177 4.177 22 C 0.045 3.955 23 H 0.131 0.869 24 F -0.197 7.197 25 C -0.141 4.141 26 C -0.178 4.178 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.250 0.750 31 H 0.248 0.752 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.565 -19.274 4.251 20.801 hybrid contribution -0.101 0.836 -0.632 1.053 sum -6.666 -18.438 3.619 19.937 Atomic orbital electron populations 1.69832 1.08573 1.29956 1.38730 1.26742 0.95820 1.04299 0.91603 0.85153 0.78482 0.75575 0.79824 1.18198 1.19264 1.19032 1.19690 0.94836 0.91329 1.47139 0.90913 1.18021 0.93377 0.92699 0.89522 1.20924 1.01585 0.95445 1.05920 1.20517 0.93663 0.97502 1.00052 1.17107 0.93032 0.86357 1.08936 1.41895 1.51406 1.20860 1.16577 1.16139 0.81204 0.80598 0.82445 1.90877 1.44086 1.72866 1.42218 1.44889 1.46931 1.25159 1.21272 1.22187 0.96007 0.92328 0.87477 0.89900 1.22807 0.97356 0.95533 1.01716 1.22424 0.94453 0.97060 1.01134 1.22973 0.97406 0.92993 1.04377 1.22764 0.86522 0.97107 0.89111 0.86925 1.92729 1.70673 1.95459 1.60880 1.20526 0.99315 0.92042 1.02249 1.21160 0.97494 0.96312 1.02796 0.90521 0.88586 0.87434 0.75031 0.75192 0.91237 0.92077 0.89668 0.89177 0.87844 0.89799 0.85903 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.40 10.59 21.82 0.23 -45.17 16 2 C 0.03 1.41 5.42 85.23 0.46 1.87 16 3 Si 0.99 39.88 29.56 68.60 2.03 41.91 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.50 -28.01 9.03 23.39 0.21 -27.79 16 8 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 9 C 0.07 3.74 5.55 -21.27 -0.12 3.63 16 10 C -0.22 -11.73 9.74 22.48 0.22 -11.51 16 11 C -0.10 -4.86 8.61 22.14 0.19 -4.67 16 12 C 0.04 1.81 6.31 38.57 0.24 2.05 16 13 N -0.66 -23.37 5.31 -316.78 -1.68 -25.05 16 14 C 0.70 24.96 8.39 179.05 1.50 26.46 16 15 O -0.62 -27.87 13.43 -4.00 -0.05 -27.92 16 16 N -0.73 -18.56 4.88 -454.34 -2.21 -20.78 16 17 C 0.13 2.73 3.23 45.72 0.15 2.88 16 18 H 0.08 2.15 7.59 -2.39 -0.02 2.13 16 19 C -0.14 -2.54 6.54 31.70 0.21 -2.33 16 20 C -0.11 -1.24 6.91 31.92 0.22 -1.02 16 21 C -0.14 -1.39 6.62 31.67 0.21 -1.18 16 22 C 0.08 1.23 4.68 31.32 0.15 1.38 16 23 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 24 F -0.22 -4.09 15.41 44.97 0.69 -3.40 16 25 C -0.12 -5.60 9.90 22.13 0.22 -5.38 16 26 C -0.16 -8.43 8.61 22.48 0.19 -8.24 16 27 H 0.28 13.94 8.30 -92.71 -0.77 13.17 16 28 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 29 H 0.11 5.38 6.22 -2.91 -0.02 5.36 16 30 H 0.41 11.12 8.83 -92.71 -0.82 10.30 16 31 H 0.41 8.52 7.38 -92.71 -0.68 7.84 16 32 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 38 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.12 6.62 6.13 -2.91 -0.02 6.60 16 Total: -1.00 -69.57 325.30 2.64 -66.92 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -0.41 Total: 37.35 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 4.05 Total: -23.86 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.67 Total: -91.00 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.69 Total: -3.40 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -69.57 2.64 -66.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334680127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.691 kcal (2) G-P(sol) polarization free energy of solvation -69.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds