Wall clock time and date at job start Tue Mar 31 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00573 * 2 1 4 4 H 1.48500 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47131 * 300.00358 * 3 2 1 6 6 H 1.48506 * 109.46725 * 60.00005 * 3 2 1 7 7 C 1.38814 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00010 * 197.37370 * 7 2 1 9 9 N 1.36941 * 119.99980 * 17.37702 * 7 2 1 10 10 C 1.46927 * 120.63026 * 207.68228 * 9 7 2 11 11 C 1.53191 * 108.77667 * 233.58619 * 10 9 7 12 12 C 1.53038 * 109.30920 * 305.36295 * 11 10 9 13 13 C 1.50700 * 109.45750 * 181.38229 * 12 11 10 14 14 N 1.28667 * 124.93186 * 299.69765 * 13 12 11 15 15 C 1.32524 * 117.87849 * 180.25893 * 14 13 12 16 16 C 1.34615 * 113.15631 * 0.02562 * 15 14 13 17 17 S 1.70914 * 124.92904 * 120.00085 * 13 12 11 18 18 C 1.51004 * 125.22395 * 179.97438 * 16 15 14 19 19 C 1.53282 * 108.58185 * 343.94206 * 18 16 15 20 20 C 1.53141 * 108.99488 * 49.26822 * 19 18 16 21 21 C 1.52134 * 124.20178 * 180.02562 * 15 14 13 22 22 C 1.53042 * 109.53769 * 61.36919 * 12 11 10 23 23 C 1.46922 * 120.63206 * 27.65320 * 9 7 2 24 24 H 0.97004 * 119.99708 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58779 * 113.79280 * 10 9 7 26 26 H 1.09008 * 109.58421 * 353.37349 * 10 9 7 27 27 H 1.08997 * 109.49865 * 185.41363 * 11 10 9 28 28 H 1.09001 * 109.52285 * 65.33237 * 11 10 9 29 29 H 1.08999 * 109.46547 * 301.35586 * 12 11 10 30 30 H 1.08996 * 109.61399 * 103.66648 * 18 16 15 31 31 H 1.08995 * 109.61741 * 224.21389 * 18 16 15 32 32 H 1.08998 * 109.55055 * 169.12766 * 19 18 16 33 33 H 1.09000 * 109.54867 * 289.31806 * 19 18 16 34 34 H 1.09003 * 109.47381 * 49.61499 * 20 19 18 35 35 H 1.09005 * 109.46956 * 169.62135 * 20 19 18 36 36 H 1.08994 * 109.59531 * 42.70131 * 21 15 14 37 37 H 1.08997 * 109.71875 * 282.31818 * 21 15 14 38 38 H 1.08989 * 109.50306 * 58.58318 * 22 12 11 39 39 H 1.09003 * 109.49487 * 178.68589 * 22 12 11 40 40 H 1.08998 * 109.59154 * 246.20260 * 23 9 7 41 41 H 1.09001 * 109.58658 * 6.63497 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0532 -1.2238 0.2787 9 7 1.3723 -2.3609 -0.3552 10 6 1.8190 -3.6549 0.1783 11 6 2.0740 -4.6094 -0.9925 12 6 0.8183 -4.6885 -1.8637 13 6 1.0540 -5.6528 -2.9976 14 7 1.9690 -5.5273 -3.8934 15 6 2.0479 -6.4582 -4.8333 16 6 1.1223 -7.4262 -4.6986 17 16 0.1398 -7.0681 -3.2845 18 6 0.9657 -8.6153 -5.6161 19 6 1.7343 -8.3364 -6.9126 20 6 3.1459 -7.8572 -6.5619 21 6 3.0719 -6.4527 -5.9584 22 6 0.5006 -3.3029 -2.4306 23 6 0.2277 -2.3336 -1.2760 24 1 -0.4850 0.8401 0.0004 25 1 1.0466 -4.0694 0.8262 26 1 2.7398 -3.5180 0.7454 27 1 2.3132 -5.6009 -0.6081 28 1 2.9081 -4.2396 -1.5889 29 1 -0.0209 -5.0351 -1.2607 30 1 1.3712 -9.5050 -5.1344 31 1 -0.0898 -8.7669 -5.8418 32 1 1.7956 -9.2499 -7.5040 33 1 1.2175 -7.5657 -7.4844 34 1 3.5926 -8.5404 -5.8395 35 1 3.7562 -7.8330 -7.4648 36 1 4.0483 -6.1736 -5.5627 37 1 2.7710 -5.7398 -6.7260 38 1 1.3492 -2.9449 -3.0134 39 1 -0.3802 -3.3646 -3.0697 40 1 -0.6745 -2.6404 -0.7469 41 1 0.0985 -1.3250 -1.6686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335110522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:05 Heat of formation + Delta-G solvation = 37.763511 kcal Electronic energy + Delta-G solvation = -21164.249108 eV Core-core repulsion = 18170.057656 eV Total energy + Delta-G solvation = -2994.191452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13443 -37.79867 -36.21484 -33.32983 -31.03068 -30.91934 -29.81808 -28.76560 -25.90899 -24.10803 -23.43253 -22.22055 -22.08755 -20.73553 -19.28716 -18.06352 -17.81785 -16.59836 -15.34395 -15.01744 -14.75713 -14.45589 -14.21930 -14.04231 -13.76890 -13.48245 -13.20500 -13.09890 -12.83175 -12.66041 -12.20421 -11.95132 -11.85003 -11.37897 -11.12530 -11.10227 -10.96919 -10.70619 -10.69274 -10.56521 -10.24267 -10.20800 -9.94002 -9.67476 -9.60636 -9.11133 -9.04492 -8.47371 -8.31682 -6.64238 -5.75363 -3.16766 0.88127 1.48734 1.91783 2.95148 3.40450 3.48353 3.51042 4.11451 4.53557 4.55124 4.62214 4.70500 4.98602 5.01314 5.28539 5.30462 5.36694 5.40686 5.48807 5.56800 5.58179 5.59268 5.65171 5.74597 5.76954 5.89244 6.04536 6.08479 6.16806 6.31678 6.37435 6.49773 6.62257 6.71283 6.76140 6.82686 7.04202 7.41621 7.68222 7.84010 8.01536 8.48677 9.24970 9.88539 10.45011 11.33375 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.003647 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.906976 B = 7675.074187 C = 8073.537278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.147 3.853 11 C -0.117 4.117 12 C -0.004 4.004 13 C 0.089 3.911 14 N -0.472 5.472 15 C 0.072 3.928 16 C -0.244 4.244 17 S 0.085 5.915 18 C -0.036 4.036 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.040 4.040 22 C -0.124 4.124 23 C 0.172 3.828 24 H 0.253 0.747 25 H 0.018 0.982 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 -18.051 -11.996 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.020 3.980 11 C -0.158 4.158 12 C -0.026 4.026 13 C -0.190 4.190 14 N -0.184 5.184 15 C -0.060 4.060 16 C -0.364 4.364 17 S 0.345 5.655 18 C -0.076 4.076 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.079 4.079 22 C -0.165 4.165 23 C 0.046 3.954 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.975 -17.938 -11.415 21.285 hybrid contribution 0.871 0.865 -0.608 1.370 sum 1.846 -17.074 -12.024 20.964 Atomic orbital electron populations 1.70042 1.05247 1.25333 1.54205 1.25023 0.95282 0.98383 1.01044 0.86238 0.79436 0.83999 0.77220 1.20241 1.21584 1.21784 1.19238 0.92747 0.84876 1.41009 0.91616 1.44068 1.35839 1.01417 1.50149 1.20908 0.97789 0.86808 0.92503 1.22037 0.96331 0.99160 0.98225 1.19951 0.99513 0.92911 0.90244 1.27314 0.94093 0.97878 0.99749 1.65786 1.21575 1.27694 1.03369 1.20894 0.97949 0.90368 0.96782 1.25847 1.02974 1.04603 1.03016 1.83829 1.35825 1.22910 1.22930 1.20092 1.00925 0.93249 0.93317 1.21604 0.95855 1.01626 0.96351 1.21569 0.97009 0.96165 1.00891 1.20335 0.96612 0.97502 0.93490 1.22237 1.00661 0.93426 1.00179 1.20804 0.88624 0.98286 0.87683 0.93731 0.96370 0.92455 0.93303 0.91191 0.90129 0.90520 0.90686 0.91060 0.91390 0.91533 0.90936 0.89924 0.90122 0.91505 0.93449 0.96311 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 11.19 55.49 0.62 -25.76 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 21.96 29.59 -169.99 -5.03 16.94 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -6.93 9.59 -15.06 -0.14 -7.08 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 9 N -0.59 -15.06 2.99 -172.31 -0.52 -15.58 16 10 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 11 C -0.12 -2.16 5.34 -26.61 -0.14 -2.30 16 12 C 0.00 -0.07 2.58 -91.73 -0.24 -0.30 16 13 C 0.09 1.49 5.90 -13.60 -0.08 1.40 16 14 N -0.47 -8.17 10.49 -7.32 -0.08 -8.24 16 15 C 0.07 1.04 6.78 -82.87 -0.56 0.47 16 16 C -0.24 -3.15 6.39 -35.44 -0.23 -3.37 16 17 S 0.09 1.17 23.16 -107.50 -2.49 -1.32 16 18 C -0.04 -0.33 6.28 -27.59 -0.17 -0.51 16 19 C -0.12 -0.90 5.95 -26.51 -0.16 -1.05 16 20 C -0.12 -0.98 5.87 -26.64 -0.16 -1.13 16 21 C -0.04 -0.44 6.29 -27.15 -0.17 -0.61 16 22 C -0.12 -2.51 5.33 -26.61 -0.14 -2.65 16 23 C 0.17 4.16 5.31 -3.71 -0.02 4.14 16 24 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 1.19 7.93 -51.92 -0.41 0.78 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.46 8.14 -51.94 -0.42 1.04 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -30.52 333.98 -11.39 -41.91 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -6.61 Total: -3.01 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.32 Total: -9.96 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.03 Total: -49.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.52 -11.39 -41.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335110522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.678 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds