Wall clock time and date at job start Tue Mar 31 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00573 * 2 1 4 4 H 1.48500 * 109.47142 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47131 * 300.00358 * 3 2 1 6 6 H 1.48506 * 109.46725 * 60.00005 * 3 2 1 7 7 C 1.38814 * 119.99585 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00010 * 197.37370 * 7 2 1 9 9 N 1.36941 * 119.99980 * 17.37702 * 7 2 1 10 10 C 1.46927 * 120.63026 * 207.68228 * 9 7 2 11 11 C 1.53191 * 108.77667 * 233.58619 * 10 9 7 12 12 C 1.53038 * 109.30920 * 305.36295 * 11 10 9 13 13 C 1.50700 * 109.45750 * 181.38229 * 12 11 10 14 14 N 1.28667 * 124.93186 * 299.69765 * 13 12 11 15 15 C 1.32524 * 117.87849 * 180.25893 * 14 13 12 16 16 C 1.34615 * 113.15631 * 0.02562 * 15 14 13 17 17 S 1.70914 * 124.92904 * 120.00085 * 13 12 11 18 18 C 1.51004 * 125.22395 * 179.97438 * 16 15 14 19 19 C 1.53282 * 108.58185 * 343.94206 * 18 16 15 20 20 C 1.53141 * 108.99488 * 49.26822 * 19 18 16 21 21 C 1.52134 * 124.20178 * 180.02562 * 15 14 13 22 22 C 1.53042 * 109.53769 * 61.36919 * 12 11 10 23 23 C 1.46922 * 120.63206 * 27.65320 * 9 7 2 24 24 H 0.97004 * 119.99708 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58779 * 113.79280 * 10 9 7 26 26 H 1.09008 * 109.58421 * 353.37349 * 10 9 7 27 27 H 1.08997 * 109.49865 * 185.41363 * 11 10 9 28 28 H 1.09001 * 109.52285 * 65.33237 * 11 10 9 29 29 H 1.08999 * 109.46547 * 301.35586 * 12 11 10 30 30 H 1.08996 * 109.61399 * 103.66648 * 18 16 15 31 31 H 1.08995 * 109.61741 * 224.21389 * 18 16 15 32 32 H 1.08998 * 109.55055 * 169.12766 * 19 18 16 33 33 H 1.09000 * 109.54867 * 289.31806 * 19 18 16 34 34 H 1.09003 * 109.47381 * 49.61499 * 20 19 18 35 35 H 1.09005 * 109.46956 * 169.62135 * 20 19 18 36 36 H 1.08994 * 109.59531 * 42.70131 * 21 15 14 37 37 H 1.08997 * 109.71875 * 282.31818 * 21 15 14 38 38 H 1.08989 * 109.50306 * 58.58318 * 22 12 11 39 39 H 1.09003 * 109.49487 * 178.68589 * 22 12 11 40 40 H 1.08998 * 109.59154 * 246.20260 * 23 9 7 41 41 H 1.09001 * 109.58658 * 6.63497 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0532 -1.2238 0.2787 9 7 1.3723 -2.3609 -0.3552 10 6 1.8190 -3.6549 0.1783 11 6 2.0740 -4.6094 -0.9925 12 6 0.8183 -4.6885 -1.8637 13 6 1.0540 -5.6528 -2.9976 14 7 1.9690 -5.5273 -3.8934 15 6 2.0479 -6.4582 -4.8333 16 6 1.1223 -7.4262 -4.6986 17 16 0.1398 -7.0681 -3.2845 18 6 0.9657 -8.6153 -5.6161 19 6 1.7343 -8.3364 -6.9126 20 6 3.1459 -7.8572 -6.5619 21 6 3.0719 -6.4527 -5.9584 22 6 0.5006 -3.3029 -2.4306 23 6 0.2277 -2.3336 -1.2760 24 1 -0.4850 0.8401 0.0004 25 1 1.0466 -4.0694 0.8262 26 1 2.7398 -3.5180 0.7454 27 1 2.3132 -5.6009 -0.6081 28 1 2.9081 -4.2396 -1.5889 29 1 -0.0209 -5.0351 -1.2607 30 1 1.3712 -9.5050 -5.1344 31 1 -0.0898 -8.7669 -5.8418 32 1 1.7956 -9.2499 -7.5040 33 1 1.2175 -7.5657 -7.4844 34 1 3.5926 -8.5404 -5.8395 35 1 3.7562 -7.8330 -7.4648 36 1 4.0483 -6.1736 -5.5627 37 1 2.7710 -5.7398 -6.7260 38 1 1.3492 -2.9449 -3.0134 39 1 -0.3802 -3.3646 -3.0697 40 1 -0.6745 -2.6404 -0.7469 41 1 0.0985 -1.3250 -1.6686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335110522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:05 Heat of formation + Delta-G solvation = 21.482846 kcal Electronic energy + Delta-G solvation = -21164.955090 eV Core-core repulsion = 18170.057656 eV Total energy + Delta-G solvation = -2994.897434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22556 -39.33390 -37.29024 -35.11965 -32.73843 -31.81087 -31.57896 -29.97065 -27.57138 -25.49991 -24.50272 -23.83821 -23.36871 -22.04942 -20.72994 -19.27122 -18.98853 -18.40412 -16.91202 -16.24138 -16.13017 -15.61920 -15.45274 -15.34961 -15.15824 -14.81083 -14.76690 -14.40093 -14.14637 -13.92594 -13.65218 -13.15385 -12.94992 -12.87042 -12.78290 -12.62129 -12.41488 -12.04322 -12.02282 -11.81942 -11.77914 -11.72168 -11.38128 -11.36398 -11.34136 -10.56604 -10.36328 -10.13019 -9.43704 -8.70119 -7.88314 -5.32689 -0.23416 0.40377 0.80828 1.45177 1.47392 1.58044 1.81724 2.50869 3.04014 3.26718 3.66017 3.76948 3.82718 3.94395 3.98233 4.04096 4.04757 4.23216 4.35364 4.48482 4.57350 4.58575 4.65839 4.66491 4.81859 4.85275 4.91839 4.98944 5.01754 5.08164 5.09931 5.14013 5.14810 5.22996 5.35527 5.40315 5.42639 5.51782 5.64258 5.72428 6.38635 6.89643 7.14038 7.84855 8.36611 9.18558 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029501 B = 0.003647 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.906976 B = 7675.074187 C = 8073.537278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.144 3.856 11 C -0.102 4.102 12 C 0.003 3.997 13 C 0.053 3.947 14 N -0.499 5.499 15 C 0.041 3.959 16 C -0.230 4.230 17 S 0.124 5.876 18 C -0.040 4.040 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.041 4.041 22 C -0.107 4.107 23 C 0.180 3.820 24 H 0.250 0.750 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.006 0.994 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 -20.573 -13.431 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.018 3.982 11 C -0.143 4.143 12 C -0.019 4.019 13 C -0.225 4.225 14 N -0.213 5.213 15 C -0.089 4.089 16 C -0.351 4.351 17 S 0.383 5.617 18 C -0.080 4.080 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.081 4.081 22 C -0.148 4.148 23 C 0.054 3.946 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.373 -20.481 -12.844 24.214 hybrid contribution 0.737 1.542 -0.195 1.721 sum 2.110 -18.938 -13.038 23.089 Atomic orbital electron populations 1.70180 1.06564 1.25789 1.55392 1.25764 0.96082 1.01391 1.01274 0.85237 0.78606 0.79944 0.76851 1.19283 1.21712 1.21608 1.19534 0.92962 0.86195 1.40598 0.91767 1.44322 1.35971 1.02305 1.50883 1.21051 0.97764 0.85676 0.93698 1.21823 0.96077 0.99461 0.96892 1.19715 0.99370 0.91917 0.90918 1.26831 0.95942 0.99661 1.00068 1.65772 1.22177 1.29221 1.04087 1.21379 0.99613 0.90547 0.97394 1.26464 1.01291 1.04888 1.02421 1.83595 1.34608 1.20481 1.22966 1.20350 1.02282 0.92018 0.93304 1.21630 0.94945 1.02807 0.95714 1.21571 0.97936 0.94000 1.01551 1.20463 0.95303 0.99683 0.92615 1.21939 1.00261 0.94235 0.98386 1.20574 0.88054 0.97392 0.88531 0.94054 0.95716 0.92423 0.90631 0.93151 0.89123 0.88850 0.89296 0.88249 0.91816 0.91489 0.88804 0.90765 0.90137 0.93584 0.92185 0.97587 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 11.19 21.65 0.24 -55.90 16 2 C -0.05 -2.85 4.91 84.86 0.42 -2.44 16 3 Si 0.97 46.07 29.59 68.60 2.03 48.10 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.26 -14.97 9.59 84.03 0.81 -14.17 16 8 H 0.06 3.59 7.89 -2.91 -0.02 3.57 16 9 N -0.61 -31.94 2.99 -699.07 -2.09 -34.04 16 10 C 0.14 6.16 6.52 86.36 0.56 6.72 16 11 C -0.10 -3.76 5.34 30.67 0.16 -3.59 16 12 C 0.00 0.11 2.58 -11.51 -0.03 0.08 16 13 C 0.05 1.74 5.90 88.57 0.52 2.26 16 14 N -0.50 -17.10 10.49 -177.08 -1.86 -18.96 16 15 C 0.04 1.14 6.78 42.08 0.29 1.43 16 16 C -0.23 -5.37 6.39 24.95 0.16 -5.21 16 17 S 0.12 3.15 23.16 -56.49 -1.31 1.84 16 18 C -0.04 -0.59 6.28 30.04 0.19 -0.40 16 19 C -0.11 -1.31 5.95 30.74 0.18 -1.13 16 20 C -0.11 -1.52 5.87 30.66 0.18 -1.34 16 21 C -0.04 -0.86 6.29 30.32 0.19 -0.67 16 22 C -0.11 -4.46 5.33 30.67 0.16 -4.30 16 23 C 0.18 9.06 5.31 86.37 0.46 9.51 16 24 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 2.42 7.93 -2.38 -0.02 2.40 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 3.02 8.12 -2.39 -0.02 3.00 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.83 8.11 -2.39 -0.02 0.81 16 34 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.06 3.17 6.04 -2.39 -0.01 3.16 16 Total: -1.00 -67.49 333.98 2.27 -65.22 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.00 Total: 6.97 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.25 Total: -13.23 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.71 Total: -108.90 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.31 Total: 1.84 kcal Total: -67.49 2.27 -65.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335110522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.703 kcal (2) G-P(sol) polarization free energy of solvation -67.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds