Wall clock time and date at job start Tue Mar 31 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48496 * 109.47109 * 240.00014 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47190 * 120.00236 * 3 2 1 7 7 C 1.37872 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00007 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47467 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00431 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00097 * 179.72742 * 11 10 9 14 14 C 1.47022 * 125.64657 * 0.29061 * 13 11 10 15 15 C 1.54325 * 107.26819 * 181.02607 * 14 13 11 16 16 C 1.55156 * 102.94164 * 22.19455 * 15 14 13 17 17 H 1.09005 * 111.00359 * 82.57319 * 16 15 14 18 18 C 1.50706 * 111.00422 * 206.42056 * 16 15 14 19 19 C 1.38263 * 119.98676 * 240.00421 * 18 16 15 20 20 C 1.38229 * 120.05154 * 180.02562 * 19 18 16 21 21 C 1.38222 * 120.02234 * 359.97438 * 20 19 18 22 22 C 1.38435 * 119.97337 * 0.02562 * 21 20 19 23 23 F 1.35102 * 120.02249 * 180.02562 * 22 21 20 24 24 C 1.38174 * 119.98254 * 59.72975 * 18 16 15 25 25 C 1.47427 * 125.64684 * 179.97438 * 13 11 10 26 26 H 0.96995 * 120.00094 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.47290 * 59.99999 * 9 7 2 28 28 H 1.08998 * 109.47607 * 300.00424 * 9 7 2 29 29 H 0.97000 * 119.99456 * 359.97438 * 10 9 7 30 30 H 1.08992 * 109.88825 * 300.44379 * 14 13 11 31 31 H 1.09001 * 109.87665 * 61.45908 * 14 13 11 32 32 H 1.09004 * 110.71878 * 140.56082 * 15 14 13 33 33 H 1.08996 * 110.71966 * 263.65538 * 15 14 13 34 34 H 1.08002 * 119.97882 * 0.02562 * 19 18 16 35 35 H 1.07994 * 119.98886 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.01219 * 180.02562 * 21 20 19 37 37 H 1.07994 * 120.01604 * 0.02562 * 24 18 16 38 38 H 1.09001 * 110.36238 * 274.73951 * 25 13 11 39 39 H 1.08998 * 110.36877 * 37.06534 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5585 -5.1055 0.0029 13 7 2.6298 -5.9077 -0.0039 14 6 4.0947 -5.7825 -0.0049 15 6 4.6765 -7.2115 -0.0386 16 6 3.5093 -8.0482 -0.6259 17 1 3.4924 -7.9854 -1.7140 18 6 3.5906 -9.4826 -0.1710 19 6 3.7141 -10.4970 -1.1024 20 6 3.7883 -11.8132 -0.6867 21 6 3.7396 -12.1166 0.6610 22 6 3.6160 -11.1018 1.5944 23 9 3.5688 -11.3972 2.9119 24 6 3.5475 -9.7831 1.1770 25 6 2.2776 -7.3393 -0.0037 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6248 -2.5563 0.8919 29 1 3.1568 -3.4353 0.0003 30 1 4.4190 -5.2294 -0.8862 31 1 4.4232 -5.2672 0.8977 32 1 5.5496 -7.2571 -0.6898 33 1 4.9289 -7.5489 0.9666 34 1 3.7526 -10.2609 -2.1556 35 1 3.8851 -12.6047 -1.4150 36 1 3.7980 -13.1450 0.9856 37 1 3.4551 -8.9903 1.9045 38 1 2.1103 -7.6885 1.0152 39 1 1.3920 -7.5122 -0.6151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335330922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:33 Heat of formation + Delta-G solvation = -53.782386 kcal Electronic energy + Delta-G solvation = -22300.786182 eV Core-core repulsion = 18736.411826 eV Total energy + Delta-G solvation = -3564.374356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.13938 -40.28101 -39.08507 -37.09996 -34.14362 -33.04114 -32.13617 -30.87383 -30.11151 -28.56824 -26.94616 -24.19204 -23.18216 -22.52725 -22.11079 -20.51316 -19.33115 -18.12906 -17.71297 -16.62501 -16.43624 -16.00404 -15.84396 -15.83279 -15.23266 -14.59879 -14.41143 -14.25455 -13.80673 -13.66022 -13.29636 -13.06048 -12.82757 -12.74218 -12.64766 -12.09792 -11.97050 -11.81074 -11.66818 -11.42478 -11.14485 -10.96096 -10.88439 -10.85775 -10.28959 -9.42598 -9.37576 -9.24130 -8.97309 -8.71635 -8.38964 -7.72207 -6.14027 -4.20785 0.82066 0.87257 3.12386 3.22876 3.26486 3.31474 3.33424 3.88958 3.92277 4.26378 4.32020 4.38147 4.46158 4.59669 4.70633 4.82702 4.93006 4.98747 5.03870 5.19627 5.21818 5.25632 5.51698 5.56729 5.66341 5.72072 5.78265 5.83955 5.87263 5.92460 6.00975 6.22911 6.48283 6.57104 7.19699 7.52032 7.58314 7.58695 7.89441 8.03964 8.76803 8.91434 9.33202 9.48868 10.96221 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.036299 B = 0.002657 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.185520 B =10534.034798 C =10599.569654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.726 5.726 11 C 0.711 3.289 12 O -0.597 6.597 13 N -0.646 5.646 14 C 0.101 3.899 15 C -0.119 4.119 16 C -0.067 4.067 17 H 0.099 0.901 18 C -0.037 4.037 19 C -0.124 4.124 20 C -0.089 4.089 21 C -0.160 4.160 22 C 0.101 3.899 23 F -0.140 7.140 24 C -0.148 4.148 25 C 0.136 3.864 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.386 0.614 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.633 -22.908 -1.306 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.378 5.378 11 C 0.413 3.587 12 O -0.476 6.476 13 N -0.387 5.387 14 C -0.023 4.023 15 C -0.157 4.157 16 C -0.086 4.086 17 H 0.117 0.883 18 C -0.038 4.038 19 C -0.142 4.142 20 C -0.107 4.107 21 C -0.179 4.179 22 C 0.081 3.919 23 F -0.119 7.119 24 C -0.167 4.167 25 C 0.012 3.988 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.219 0.781 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.082 0.918 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.469 -22.797 -1.247 25.549 hybrid contribution 0.911 0.928 0.304 1.335 sum 12.380 -21.869 -0.943 25.148 Atomic orbital electron populations 1.69971 1.06086 1.27386 1.48847 1.24944 0.94916 0.99377 0.94768 0.86468 0.79398 0.82330 0.78651 1.20087 1.21069 1.20092 1.21175 0.93197 0.90425 1.53244 0.92043 1.18994 0.87782 0.81006 0.97639 1.45729 1.10862 1.04174 1.77010 1.15687 0.84206 0.80424 0.78409 1.90882 1.13746 1.83817 1.59113 1.47604 1.05390 1.05279 1.80425 1.21938 0.81241 0.97270 1.01867 1.22721 0.97359 0.93592 1.02062 1.21447 0.96157 0.89789 1.01200 0.88293 1.19466 0.97273 0.94853 0.92218 1.21156 1.00964 0.92212 0.99885 1.20999 0.98101 0.96760 0.94850 1.21155 1.04355 0.99100 0.93256 1.17694 1.02606 0.93755 0.77797 1.91512 1.93826 1.94105 1.32444 1.21060 1.03614 0.95115 0.96904 1.22051 0.96716 0.79587 1.00449 0.92394 0.95715 0.95715 0.78128 0.91518 0.91529 0.89745 0.90298 0.85135 0.84963 0.84894 0.84461 0.91843 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 10 N -0.73 -16.10 5.51 -66.41 -0.37 -16.46 16 11 C 0.71 15.38 8.49 -86.92 -0.74 14.65 16 12 O -0.60 -15.49 16.60 5.28 0.09 -15.41 16 13 N -0.65 -10.26 3.32 -176.09 -0.59 -10.85 16 14 C 0.10 1.16 6.15 -3.06 -0.02 1.14 16 15 C -0.12 -1.01 6.36 -24.90 -0.16 -1.17 16 16 C -0.07 -0.62 3.28 -89.50 -0.29 -0.91 16 17 H 0.10 0.84 7.97 -51.93 -0.41 0.43 16 18 C -0.04 -0.32 5.00 -104.63 -0.52 -0.85 16 19 C -0.12 -0.91 9.68 -39.58 -0.38 -1.29 16 20 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 21 C -0.16 -1.25 10.03 -39.51 -0.40 -1.64 16 22 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 23 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 24 C -0.15 -1.39 8.28 -39.51 -0.33 -1.72 16 25 C 0.14 1.79 6.31 -2.40 -0.02 1.77 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.39 7.41 7.31 -40.82 -0.30 7.11 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.63 7.20 -51.93 -0.37 0.26 16 34 H 0.13 0.72 7.99 -52.49 -0.42 0.30 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.14 1.27 6.99 -52.49 -0.37 0.91 16 38 H 0.06 0.82 6.66 -51.93 -0.35 0.48 16 39 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -33.71 332.79 -9.21 -42.91 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.13 Total: 2.59 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.98 Total: 3.37 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.21 Total: -52.94 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.71 -9.21 -42.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335330922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.871 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds