Wall clock time and date at job start Tue Mar 31 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48496 * 109.47109 * 240.00014 * 3 2 1 5 5 H 1.48496 * 109.47268 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47190 * 120.00236 * 3 2 1 7 7 C 1.37872 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00007 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47467 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00431 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00097 * 179.72742 * 11 10 9 14 14 C 1.47022 * 125.64657 * 0.29061 * 13 11 10 15 15 C 1.54325 * 107.26819 * 181.02607 * 14 13 11 16 16 C 1.55156 * 102.94164 * 22.19455 * 15 14 13 17 17 H 1.09005 * 111.00359 * 82.57319 * 16 15 14 18 18 C 1.50706 * 111.00422 * 206.42056 * 16 15 14 19 19 C 1.38263 * 119.98676 * 240.00421 * 18 16 15 20 20 C 1.38229 * 120.05154 * 180.02562 * 19 18 16 21 21 C 1.38222 * 120.02234 * 359.97438 * 20 19 18 22 22 C 1.38435 * 119.97337 * 0.02562 * 21 20 19 23 23 F 1.35102 * 120.02249 * 180.02562 * 22 21 20 24 24 C 1.38174 * 119.98254 * 59.72975 * 18 16 15 25 25 C 1.47427 * 125.64684 * 179.97438 * 13 11 10 26 26 H 0.96995 * 120.00094 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.47290 * 59.99999 * 9 7 2 28 28 H 1.08998 * 109.47607 * 300.00424 * 9 7 2 29 29 H 0.97000 * 119.99456 * 359.97438 * 10 9 7 30 30 H 1.08992 * 109.88825 * 300.44379 * 14 13 11 31 31 H 1.09001 * 109.87665 * 61.45908 * 14 13 11 32 32 H 1.09004 * 110.71878 * 140.56082 * 15 14 13 33 33 H 1.08996 * 110.71966 * 263.65538 * 15 14 13 34 34 H 1.08002 * 119.97882 * 0.02562 * 19 18 16 35 35 H 1.07994 * 119.98886 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.01219 * 180.02562 * 21 20 19 37 37 H 1.07994 * 120.01604 * 0.02562 * 24 18 16 38 38 H 1.09001 * 110.36238 * 274.73951 * 25 13 11 39 39 H 1.08998 * 110.36877 * 37.06534 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 1.7540 -4.8833 0.0019 12 8 0.5585 -5.1055 0.0029 13 7 2.6298 -5.9077 -0.0039 14 6 4.0947 -5.7825 -0.0049 15 6 4.6765 -7.2115 -0.0386 16 6 3.5093 -8.0482 -0.6259 17 1 3.4924 -7.9854 -1.7140 18 6 3.5906 -9.4826 -0.1710 19 6 3.7141 -10.4970 -1.1024 20 6 3.7883 -11.8132 -0.6867 21 6 3.7396 -12.1166 0.6610 22 6 3.6160 -11.1018 1.5944 23 9 3.5688 -11.3972 2.9119 24 6 3.5475 -9.7831 1.1770 25 6 2.2776 -7.3393 -0.0037 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6248 -2.5563 0.8919 29 1 3.1568 -3.4353 0.0003 30 1 4.4190 -5.2294 -0.8862 31 1 4.4232 -5.2672 0.8977 32 1 5.5496 -7.2571 -0.6898 33 1 4.9289 -7.5489 0.9666 34 1 3.7526 -10.2609 -2.1556 35 1 3.8851 -12.6047 -1.4150 36 1 3.7980 -13.1450 0.9856 37 1 3.4551 -8.9903 1.9045 38 1 2.1103 -7.6885 1.0152 39 1 1.3920 -7.5122 -0.6151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335330922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:32 Heat of formation + Delta-G solvation = -75.372860 kcal Electronic energy + Delta-G solvation = -22301.722415 eV Core-core repulsion = 18736.411826 eV Total energy + Delta-G solvation = -3565.310589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.88775 -41.41194 -40.20017 -38.29244 -36.16180 -34.52627 -33.69036 -31.50008 -31.06865 -29.78944 -28.67429 -25.50338 -24.22195 -23.71324 -23.25019 -21.30074 -21.00165 -19.58607 -18.53865 -18.05383 -17.37204 -17.11866 -16.98986 -16.86127 -16.58587 -16.43427 -15.73770 -15.18745 -14.85023 -14.56483 -14.49791 -14.25954 -14.11284 -13.96217 -13.77949 -13.59416 -13.36835 -12.91801 -12.72627 -12.67088 -12.60043 -12.25045 -12.20136 -11.83821 -11.63846 -11.50766 -11.27009 -10.79792 -10.07867 -9.87935 -9.61937 -9.40698 -8.28477 -6.45605 0.19373 0.26006 1.43186 1.48235 1.56010 1.70929 2.17081 2.38844 2.60505 3.06190 3.21363 3.26492 3.53917 3.67383 3.75024 3.88700 4.08922 4.23684 4.24985 4.30043 4.41481 4.50586 4.64909 4.79256 4.84396 4.94482 4.99503 5.07271 5.10855 5.17437 5.22542 5.24889 5.34351 5.42033 5.48219 5.57930 5.70473 5.83724 5.96538 6.19190 6.65506 7.15462 7.24482 7.66449 8.83841 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.036299 B = 0.002657 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.185520 B =10534.034798 C =10599.569654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.719 5.719 11 C 0.705 3.295 12 O -0.650 6.650 13 N -0.639 5.639 14 C 0.090 3.910 15 C -0.107 4.107 16 C -0.050 4.050 17 H 0.114 0.886 18 C -0.045 4.045 19 C -0.120 4.120 20 C -0.085 4.085 21 C -0.159 4.159 22 C 0.075 3.925 23 F -0.154 7.154 24 C -0.159 4.159 25 C 0.127 3.873 26 H 0.269 0.731 27 H -0.014 1.014 28 H -0.016 1.016 29 H 0.403 0.597 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.909 -23.676 -2.494 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.163 3.837 10 N -0.373 5.373 11 C 0.407 3.593 12 O -0.533 6.533 13 N -0.378 5.378 14 C -0.032 4.032 15 C -0.145 4.145 16 C -0.069 4.069 17 H 0.132 0.868 18 C -0.046 4.046 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.178 4.178 22 C 0.056 3.944 23 F -0.133 7.133 24 C -0.178 4.178 25 C 0.004 3.996 26 H 0.078 0.922 27 H 0.004 0.996 28 H 0.002 0.998 29 H 0.239 0.761 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.835 -23.628 -2.433 28.005 hybrid contribution -0.134 1.022 0.671 1.230 sum 14.701 -22.606 -1.763 27.023 Atomic orbital electron populations 1.70144 1.08328 1.28697 1.49806 1.26092 0.95797 1.03934 0.93777 0.85169 0.77877 0.76376 0.79548 1.18484 1.21059 1.18652 1.21542 0.94265 0.90361 1.53160 0.89838 1.18423 0.88086 0.83313 0.93898 1.45300 1.10879 1.03587 1.77529 1.15861 0.84214 0.81114 0.78123 1.90834 1.16489 1.84712 1.61270 1.47555 1.06951 1.05028 1.78217 1.22308 0.78150 0.99970 1.02739 1.22734 0.97693 0.90790 1.03243 1.21332 0.93979 0.89877 1.01681 0.86803 1.19406 0.98384 0.94733 0.92079 1.21473 0.99449 0.92052 1.00769 1.21372 0.96639 0.97413 0.94836 1.21447 1.03314 0.99485 0.93562 1.17980 1.04317 0.94494 0.77655 1.91472 1.94145 1.94203 1.33486 1.21080 1.04274 0.95045 0.97371 1.22280 0.98367 0.78370 1.00593 0.92186 0.99645 0.99825 0.76121 0.90312 0.90977 0.86597 0.89712 0.82803 0.81901 0.83315 0.85258 0.92008 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 42.53 29.54 68.60 2.03 44.55 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.56 -30.81 9.28 25.60 0.24 -30.57 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.37 5.43 85.63 0.46 16.84 16 10 N -0.72 -32.76 5.51 -482.29 -2.66 -35.41 16 11 C 0.71 31.63 8.49 179.06 1.52 33.15 16 12 O -0.65 -35.79 16.60 -4.01 -0.07 -35.86 16 13 N -0.64 -20.29 3.32 -829.29 -2.76 -23.04 16 14 C 0.09 1.90 6.15 86.73 0.53 2.43 16 15 C -0.11 -1.48 6.36 31.78 0.20 -1.28 16 16 C -0.05 -0.81 3.28 -10.07 -0.03 -0.84 16 17 H 0.11 1.56 7.97 -2.38 -0.02 1.54 16 18 C -0.05 -0.69 5.00 -19.87 -0.10 -0.79 16 19 C -0.12 -1.35 9.68 22.27 0.22 -1.13 16 20 C -0.08 -0.85 10.04 22.26 0.22 -0.63 16 21 C -0.16 -2.16 10.03 22.31 0.22 -1.93 16 22 C 0.07 1.38 7.30 22.38 0.16 1.55 16 23 F -0.15 -3.37 17.27 44.97 0.78 -2.59 16 24 C -0.16 -2.87 8.28 22.31 0.18 -2.68 16 25 C 0.13 3.34 6.31 86.93 0.55 3.89 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 28 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H 0.40 15.30 7.31 -92.71 -0.68 14.62 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 1.13 7.20 -2.39 -0.02 1.11 16 34 H 0.15 1.02 7.99 -2.91 -0.02 1.00 16 35 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 36 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.13 2.43 6.99 -2.91 -0.02 2.41 16 38 H 0.06 1.65 6.66 -2.39 -0.02 1.63 16 39 H 0.06 1.80 8.03 -2.39 -0.02 1.79 16 Total: -1.00 -77.73 332.79 2.85 -74.88 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.39 Total: 15.53 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 4.85 Total: 18.67 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -5.13 Total: -115.18 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.07 Total: -35.86 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -77.73 2.85 -74.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335330922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.493 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds