Wall clock time and date at job start Tue Mar 31 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00249 * 2 1 4 4 H 1.48503 * 109.47203 * 240.00101 * 3 2 1 5 5 H 1.48504 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47235 * 120.00076 * 3 2 1 7 7 C 1.37884 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99634 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00260 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00117 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00010 * 180.02562 * 11 10 9 14 14 C 1.47419 * 125.65077 * 359.95500 * 13 11 10 15 15 C 1.54912 * 104.83367 * 155.90703 * 14 13 11 16 16 C 1.55157 * 101.57846 * 37.01227 * 15 14 13 17 17 C 1.47028 * 125.64687 * 180.02562 * 13 11 10 18 18 H 1.09000 * 109.88221 * 300.59189 * 17 13 11 19 19 C 1.50698 * 109.88208 * 61.60596 * 17 13 11 20 20 C 1.38271 * 119.98983 * 38.80109 * 19 17 13 21 21 C 1.38219 * 120.05279 * 180.25774 * 20 19 17 22 22 C 1.38227 * 120.02402 * 359.48356 * 21 20 19 23 23 C 1.38435 * 119.97416 * 0.26250 * 22 21 20 24 24 F 1.35097 * 120.02437 * 179.97438 * 23 22 21 25 25 C 1.38179 * 119.98470 * 218.54607 * 19 17 13 26 26 H 0.97008 * 119.99844 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46998 * 59.99658 * 9 7 2 28 28 H 1.09000 * 109.47079 * 299.99792 * 9 7 2 29 29 H 0.97000 * 119.99724 * 359.97438 * 10 9 7 30 30 H 1.08999 * 110.37193 * 274.74940 * 14 13 11 31 31 H 1.09007 * 110.36465 * 36.96439 * 14 13 11 32 32 H 1.09004 * 111.00247 * 155.08467 * 15 14 13 33 33 H 1.08998 * 111.00254 * 278.93782 * 15 14 13 34 34 H 1.09002 * 110.71954 * 206.13386 * 16 15 14 35 35 H 1.09005 * 110.72038 * 82.86045 * 16 15 14 36 36 H 1.08000 * 119.97479 * 0.02562 * 20 19 17 37 37 H 1.08002 * 119.99072 * 179.76964 * 21 20 19 38 38 H 1.07999 * 120.01289 * 180.27778 * 22 21 20 39 39 H 1.07994 * 120.01414 * 0.02562 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0011 12 8 0.5582 -5.1055 0.0020 13 7 2.6295 -5.9078 0.0016 14 6 4.0983 -5.7824 0.0007 15 6 4.6100 -7.1102 0.6130 16 6 3.5994 -8.1324 0.0289 17 6 2.2781 -7.3355 0.0016 18 1 1.6826 -7.5706 0.8838 19 6 1.5018 -7.6723 -1.2453 20 6 1.8502 -7.0963 -2.4531 21 6 1.1357 -7.4001 -3.5966 22 6 0.0786 -8.2886 -3.5359 23 6 -0.2679 -8.8700 -2.3283 24 9 -1.3013 -9.7381 -2.2677 25 6 0.4453 -8.5607 -1.1822 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 3.1566 -3.4355 0.0002 30 1 4.4687 -5.6668 -1.0179 31 1 4.4072 -4.9360 0.6143 32 1 5.6243 -7.3292 0.2790 33 1 4.5555 -7.0851 1.7013 34 1 3.5117 -9.0027 0.6793 35 1 3.8906 -8.4301 -0.9784 36 1 2.6789 -6.4055 -2.5023 37 1 1.4064 -6.9468 -4.5387 38 1 -0.4768 -8.5294 -4.4304 39 1 0.1757 -9.0133 -0.2395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336312507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:57 Heat of formation + Delta-G solvation = -48.712148 kcal Electronic energy + Delta-G solvation = -23173.597356 eV Core-core repulsion = 19609.442862 eV Total energy + Delta-G solvation = -3564.154494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.83172 -40.35076 -38.53889 -37.05297 -34.15601 -32.55060 -31.79938 -31.20238 -30.38159 -28.00195 -27.02180 -23.91070 -22.71286 -22.60854 -21.91001 -20.77187 -19.23355 -18.16079 -17.16989 -16.57336 -16.11993 -15.98214 -15.71420 -15.52204 -15.11507 -14.62546 -14.28574 -14.03670 -13.70171 -13.50192 -13.22316 -12.97949 -12.83717 -12.47849 -12.23800 -11.93762 -11.88418 -11.66917 -11.46775 -11.34415 -11.04804 -10.96298 -10.87153 -10.79267 -10.28790 -9.40787 -9.37688 -8.90167 -8.71692 -8.62910 -8.39439 -7.72944 -6.14355 -4.21191 1.21809 1.27632 3.09157 3.25867 3.30975 3.32654 3.65778 3.89213 4.26332 4.32201 4.41376 4.53186 4.66733 4.83217 4.86412 4.99398 5.05531 5.20440 5.21557 5.30156 5.34789 5.46801 5.58475 5.62039 5.71674 5.80783 5.88174 6.02084 6.11852 6.13850 6.35178 6.43685 6.61073 6.95224 7.19497 7.52125 7.58098 7.58268 7.89260 8.03687 8.76626 8.91820 9.34126 9.49160 10.95811 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.004051 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.943790 B = 6910.696834 C = 7865.447851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.727 5.727 11 C 0.711 3.289 12 O -0.588 6.588 13 N -0.639 5.639 14 C 0.099 3.901 15 C -0.130 4.130 16 C -0.122 4.122 17 C 0.195 3.805 18 H 0.082 0.918 19 C -0.048 4.048 20 C -0.107 4.107 21 C -0.091 4.091 22 C -0.158 4.158 23 C 0.095 3.905 24 F -0.144 7.144 25 C -0.140 4.140 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.385 0.615 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -18.142 -3.232 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.379 5.379 11 C 0.412 3.588 12 O -0.466 6.466 13 N -0.380 5.380 14 C -0.025 4.025 15 C -0.168 4.168 16 C -0.160 4.160 17 C 0.090 3.910 18 H 0.100 0.900 19 C -0.050 4.050 20 C -0.126 4.126 21 C -0.109 4.109 22 C -0.177 4.177 23 C 0.076 3.924 24 F -0.123 7.123 25 C -0.160 4.160 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.465 -18.055 -3.215 20.198 hybrid contribution 0.561 1.003 -0.037 1.150 sum 9.026 -17.052 -3.252 19.566 Atomic orbital electron populations 1.69973 1.06095 1.27368 1.48800 1.24938 0.94894 0.99351 0.94759 0.86481 0.79411 0.82379 0.78643 1.20093 1.21069 1.20094 1.21172 0.93167 0.90430 1.53296 0.92072 1.18972 0.87750 0.80986 0.97573 1.45742 1.10803 1.04152 1.77209 1.15689 0.84284 0.80380 0.78414 1.90902 1.13630 1.83643 1.58399 1.47743 1.05507 1.04394 1.80350 1.22241 0.81063 0.98553 1.00618 1.22763 0.98874 0.94097 1.01074 1.22705 0.93111 0.97842 1.02362 1.20189 0.95191 0.80934 0.94682 0.89993 1.19936 0.94897 0.94771 0.95377 1.20966 1.00466 0.99268 0.91854 1.20963 0.94592 0.96464 0.98852 1.21075 0.99919 0.99941 0.96784 1.17613 0.87428 0.92428 0.94932 1.91475 1.56260 1.67306 1.97219 1.20882 0.96598 1.00827 0.97646 0.92404 0.95790 0.95796 0.78203 0.91826 0.90608 0.89841 0.90411 0.89782 0.90225 0.85782 0.85215 0.85102 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 10 N -0.73 -15.81 5.51 -66.42 -0.37 -16.18 16 11 C 0.71 14.94 8.13 -86.92 -0.71 14.23 16 12 O -0.59 -14.97 16.18 5.29 0.09 -14.89 16 13 N -0.64 -9.77 2.33 -170.00 -0.40 -10.17 16 14 C 0.10 1.08 6.58 -2.53 -0.02 1.06 16 15 C -0.13 -1.04 7.09 -24.58 -0.17 -1.21 16 16 C -0.12 -1.05 6.46 -24.90 -0.16 -1.21 16 17 C 0.20 2.54 3.05 -68.10 -0.21 2.33 16 18 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 19 C -0.05 -0.68 4.09 -104.63 -0.43 -1.11 16 20 C -0.11 -1.49 9.13 -39.58 -0.36 -1.85 16 21 C -0.09 -1.15 10.04 -39.59 -0.40 -1.55 16 22 C -0.16 -2.03 10.03 -39.51 -0.40 -2.43 16 23 C 0.10 1.34 7.30 -39.42 -0.29 1.05 16 24 F -0.14 -2.04 17.27 2.25 0.04 -2.00 16 25 C -0.14 -1.95 9.66 -39.51 -0.38 -2.34 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 7.23 6.80 -40.82 -0.28 6.95 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.83 7.29 -51.92 -0.38 0.45 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.64 7.80 -51.93 -0.40 0.24 16 36 H 0.12 1.66 7.69 -52.49 -0.40 1.26 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.13 1.62 8.05 -52.49 -0.42 1.20 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -33.68 333.67 -9.08 -42.76 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.22 Total: 4.38 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -3.96 Total: 0.79 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.03 Total: -51.90 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.09 Total: -14.89 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.68 -9.08 -42.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336312507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.957 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds