Wall clock time and date at job start Tue Mar 31 2020 06:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00208 * 2 1 4 4 H 1.48497 * 109.47523 * 270.00059 * 3 2 1 5 5 H 1.48509 * 109.47123 * 30.00087 * 3 2 1 6 6 H 1.48506 * 109.47196 * 149.99842 * 3 2 1 7 7 C 1.37879 * 119.99445 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00448 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99271 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46859 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47434 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00594 * 179.97438 * 11 10 9 13 13 O 1.21594 * 119.99489 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00602 * 179.97438 * 12 11 10 15 15 C 1.46501 * 120.00078 * 185.05871 * 14 12 11 16 16 C 1.50705 * 115.54775 * 294.85276 * 15 14 12 17 17 C 1.38241 * 119.97402 * 307.83856 * 16 15 14 18 18 C 1.38197 * 120.02515 * 179.97438 * 17 16 15 19 19 C 1.38462 * 119.97221 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.02739 * 180.02562 * 19 18 17 21 21 C 1.38457 * 119.95121 * 359.97438 * 19 18 17 22 22 C 1.38206 * 119.97244 * 359.97438 * 21 19 18 23 23 C 1.52995 * 117.51990 * 80.55613 * 15 14 12 24 24 C 1.53002 * 60.00268 * 107.47831 * 23 15 14 25 25 H 0.97004 * 119.99530 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47583 * 60.00281 * 9 7 2 27 27 H 1.09006 * 109.47356 * 299.99351 * 9 7 2 28 28 H 1.08996 * 109.47372 * 59.99490 * 10 9 7 29 29 H 1.09000 * 109.46816 * 299.99458 * 10 9 7 30 30 H 0.97001 * 120.00050 * 359.97438 * 11 10 9 31 31 H 0.96998 * 119.99664 * 5.05472 * 14 12 11 32 32 H 1.07994 * 119.98885 * 359.70372 * 17 16 15 33 33 H 1.07994 * 120.01605 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.01674 * 179.97438 * 21 19 18 35 35 H 1.07995 * 119.98289 * 180.02562 * 22 21 19 36 36 H 1.09002 * 117.49954 * 214.97077 * 23 15 14 37 37 H 1.09005 * 117.49924 * 359.97438 * 23 15 14 38 38 H 1.08990 * 117.50298 * 252.51224 * 24 23 15 39 39 H 1.09002 * 117.49841 * 107.48213 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0014 11 7 5.4864 -2.6367 -0.0002 12 6 6.1603 -3.8039 -0.0006 13 8 5.5523 -4.8569 -0.0015 14 7 7.5081 -3.8040 0.0000 15 6 8.2405 -5.0677 -0.1123 16 6 8.0701 -6.0225 1.0412 17 6 8.2881 -5.5881 2.3353 18 6 8.1316 -6.4626 3.3939 19 6 7.7567 -7.7744 3.1578 20 9 7.6028 -8.6301 4.1919 21 6 7.5386 -8.2084 1.8612 22 6 7.6947 -7.3317 0.8043 23 6 8.4018 -5.6696 -1.5097 24 6 9.6035 -5.0350 -0.8068 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.6809 0.8905 27 1 3.8752 -0.6797 -0.8895 28 1 3.6584 -3.1495 -0.8920 29 1 3.6578 -3.1514 0.8880 30 1 5.9715 -1.7967 0.0009 31 1 7.9930 -2.9673 0.0747 32 1 8.5852 -4.5662 2.5188 33 1 8.3024 -6.1232 4.4048 34 1 7.2465 -9.2315 1.6759 35 1 7.5242 -7.6699 -0.2071 36 1 8.3845 -6.7562 -1.5947 37 1 7.9624 -5.1255 -2.3458 38 1 9.9550 -4.0733 -1.1804 39 1 10.3768 -5.7040 -0.4293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345591225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:14 Heat of formation + Delta-G solvation = -24.521901 kcal Electronic energy + Delta-G solvation = -22422.271333 eV Core-core repulsion = 18859.165807 eV Total energy + Delta-G solvation = -3563.105526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.00172 -40.42578 -38.95546 -37.10215 -34.84503 -33.10979 -32.44692 -31.24907 -30.32428 -29.80841 -25.03631 -23.68001 -23.45042 -22.34783 -21.41639 -20.73177 -19.89748 -18.04954 -17.95035 -17.07087 -16.75301 -16.31553 -15.71809 -15.60818 -15.02805 -14.83605 -14.55080 -14.15132 -13.83917 -13.72518 -13.53286 -13.35885 -13.30742 -12.60488 -12.51637 -12.24012 -11.78225 -11.48449 -11.29352 -11.23703 -11.04891 -10.62025 -10.37819 -10.25571 -9.97973 -9.76902 -9.32690 -9.23603 -9.15658 -8.65306 -8.61378 -8.39465 -6.10918 -4.10887 0.95960 1.11337 2.76405 3.24591 3.25556 3.32111 3.33440 3.46743 3.75228 4.09854 4.19062 4.37433 4.46968 4.55647 4.63216 4.72699 4.81302 5.07888 5.21962 5.25033 5.28845 5.31406 5.61082 5.74236 5.80672 5.87859 5.97628 6.05831 6.10318 6.24749 6.30916 6.55948 6.60369 6.73397 6.81046 7.01461 7.24296 7.27753 7.67562 8.28589 8.46036 8.91312 8.94549 9.49137 11.02202 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.003248 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.292920 B = 8618.009550 C = 9363.214898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.150 3.850 11 N -0.742 5.742 12 C 0.700 3.300 13 O -0.579 6.579 14 N -0.721 5.721 15 C 0.161 3.839 16 C -0.053 4.053 17 C -0.072 4.072 18 C -0.155 4.155 19 C 0.095 3.905 20 F -0.143 7.143 21 C -0.153 4.153 22 C -0.066 4.066 23 C -0.170 4.170 24 C -0.161 4.161 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.396 0.604 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.867 -11.015 1.231 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.027 3.973 11 N -0.396 5.396 12 C 0.400 3.600 13 O -0.456 6.456 14 N -0.377 5.377 15 C 0.072 3.928 16 C -0.055 4.055 17 C -0.091 4.091 18 C -0.174 4.174 19 C 0.076 3.924 20 F -0.121 7.121 21 C -0.172 4.172 22 C -0.084 4.084 23 C -0.208 4.208 24 C -0.199 4.199 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.223 0.777 31 H 0.231 0.769 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 23.054 -11.885 1.257 25.967 hybrid contribution 0.593 1.686 0.259 1.806 sum 23.647 -10.198 1.516 25.797 Atomic orbital electron populations 1.69909 1.06287 1.27028 1.50456 1.25003 0.94765 0.99133 0.94408 0.86744 0.80240 0.83562 0.78455 1.20257 1.21282 1.19129 1.20920 0.88644 0.94909 1.51574 0.90595 1.19792 0.97930 0.91428 0.96737 1.21367 0.74663 0.99813 1.01471 1.45524 1.08897 1.06162 1.79021 1.16016 0.81005 0.84933 0.78005 1.90923 1.67321 1.30369 1.56955 1.44468 1.04775 1.07351 1.81134 1.18576 0.96190 0.86257 0.91761 1.19077 1.00003 0.93340 0.93075 1.20725 0.97845 0.99317 0.91186 1.21077 1.03579 0.92177 1.00568 1.17729 1.02287 0.88124 0.84256 1.91490 1.93359 1.69819 1.57460 1.21098 1.03746 1.01361 0.91006 1.20847 0.96040 0.92407 0.99147 1.23417 1.00622 1.01264 0.95485 1.23383 0.90695 1.03435 1.02396 0.92558 0.96070 0.96507 0.92177 0.92198 0.77675 0.76916 0.85344 0.84812 0.84707 0.84853 0.87811 0.87945 0.87872 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.08 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -12.12 5.56 -65.23 -0.36 -12.48 16 12 C 0.70 11.44 8.45 -86.92 -0.73 10.70 16 13 O -0.58 -11.86 15.81 5.28 0.08 -11.77 16 14 N -0.72 -8.29 5.36 -53.50 -0.29 -8.58 16 15 C 0.16 1.68 2.00 -132.97 -0.27 1.42 16 16 C -0.05 -0.62 4.64 -104.62 -0.49 -1.10 16 17 C -0.07 -0.80 9.64 -39.60 -0.38 -1.18 16 18 C -0.16 -1.72 10.03 -39.51 -0.40 -2.12 16 19 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 20 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 21 C -0.15 -1.71 10.03 -39.51 -0.40 -2.11 16 22 C -0.07 -0.75 9.31 -39.59 -0.37 -1.12 16 23 C -0.17 -1.56 9.72 -26.73 -0.26 -1.82 16 24 C -0.16 -1.15 10.16 -26.73 -0.27 -1.42 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.39 5.20 8.49 -40.82 -0.35 4.86 16 31 H 0.40 3.32 8.85 -40.82 -0.36 2.96 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.33 6.33 -52.49 -0.33 1.00 16 36 H 0.10 0.84 6.47 -51.93 -0.34 0.51 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -33.89 338.45 -8.85 -42.74 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.11 Total: 5.58 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -4.42 Total: -8.56 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.12 Total: -47.67 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.89 -8.85 -42.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345591225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.215 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds