Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47226 * 2 1 4 4 C 1.53004 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.53540 * 305.70121 * 4 3 2 6 6 N 1.47307 * 110.72945 * 68.62273 * 4 3 2 7 7 C 1.34528 * 106.62170 * 118.59219 * 6 4 3 8 8 O 1.21541 * 123.77138 * 179.97438 * 7 6 4 9 9 N 1.33787 * 112.45586 * 359.97438 * 7 6 4 10 10 C 1.40402 * 124.17834 * 180.02562 * 9 7 6 11 11 C 1.40371 * 125.97060 * 184.95971 * 10 9 7 12 12 C 1.35239 * 107.87577 * 180.02562 * 11 10 9 13 13 N 1.34970 * 107.85320 * 0.02562 * 12 11 10 14 14 C 1.46501 * 125.98187 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47178 * 125.00027 * 14 13 12 16 16 H 1.08005 * 120.00311 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00189 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99493 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00465 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46818 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47327 * 119.99696 * 19 17 15 22 22 H 1.48505 * 109.47253 * 240.00177 * 19 17 15 23 23 N 1.31197 * 125.96618 * 4.65525 * 10 9 7 24 24 C 1.34768 * 111.64707 * 0.02562 * 9 7 6 25 25 O 1.21240 * 127.15899 * 180.02562 * 24 9 7 26 26 H 1.09001 * 109.46774 * 59.99739 * 1 2 3 27 27 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46702 * 299.99831 * 1 2 3 29 29 H 1.09005 * 109.46989 * 240.00195 * 2 1 3 30 30 H 1.09001 * 109.47493 * 120.00063 * 2 1 3 31 31 H 1.09005 * 109.46977 * 60.00188 * 3 2 1 32 32 H 1.09001 * 109.47457 * 299.99843 * 3 2 1 33 33 H 0.97003 * 126.68741 * 298.56848 * 6 4 3 34 34 H 1.08002 * 126.06365 * 0.02562 * 11 10 9 35 35 H 1.08002 * 126.07652 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.46700 * 244.99636 * 14 13 12 37 37 H 1.08992 * 109.47089 * 4.99690 * 14 13 12 38 38 H 0.97003 * 119.99896 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9521 0.8469 0.8298 6 7 4.0920 0.9401 -1.2820 7 6 4.8055 1.9424 -1.8262 8 8 5.3778 1.8613 -2.8954 9 7 4.8145 3.0384 -1.0590 10 6 5.4827 4.2278 -1.3907 11 6 5.5993 5.3634 -0.5738 12 6 6.3126 6.2910 -1.2518 13 7 6.6367 5.7673 -2.4527 14 6 7.4091 6.4356 -3.5030 15 6 8.5877 5.5771 -3.8832 16 1 8.7460 4.6286 -3.3914 17 6 9.4642 6.0023 -4.8590 18 7 9.2711 7.1570 -5.4582 19 14 10.9256 4.9384 -5.3299 20 1 10.9180 3.6978 -4.5138 21 1 10.8373 4.5851 -6.7695 22 1 12.1837 5.6869 -5.0801 23 7 6.1120 4.4700 -2.5161 24 6 4.1031 2.8597 0.0716 25 8 3.9257 3.6652 0.9602 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6768 1.9563 -0.8900 33 1 3.9494 0.0583 -1.6602 34 1 5.1917 5.4763 0.4200 35 1 6.5753 7.2763 -0.8958 36 1 6.7759 6.5909 -4.3766 37 1 7.7643 7.3984 -3.1359 38 1 9.8875 7.4560 -6.1450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348583897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = 11.033140 kcal Electronic energy + Delta-G solvation = -23032.959142 eV Core-core repulsion = 19491.315360 eV Total energy + Delta-G solvation = -3541.643782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.79122 -41.90671 -39.81564 -37.75249 -36.78591 -35.60796 -34.61698 -32.86083 -31.13660 -30.19629 -28.91564 -26.33915 -25.51165 -24.03398 -23.29700 -22.15908 -21.49422 -20.71520 -19.16434 -18.71465 -18.23814 -18.02550 -17.43331 -16.84841 -16.67356 -16.26357 -16.04506 -15.79748 -15.37092 -15.13998 -14.72940 -14.63966 -14.30051 -14.09672 -13.75780 -13.70923 -12.99583 -12.85222 -12.77509 -12.59521 -12.38495 -12.25371 -12.19046 -11.97206 -11.68792 -11.52412 -11.48377 -11.13627 -10.75648 -10.58284 -10.02839 -9.43055 -8.37905 -6.50392 0.41413 0.69721 0.95489 1.32998 1.35267 1.44366 1.49332 1.87672 2.16130 2.26287 2.33387 2.80575 2.94663 3.50925 3.69276 3.90405 3.92278 4.16373 4.27209 4.33016 4.46519 4.63811 4.68429 4.77969 4.84423 4.92505 4.95298 4.98870 5.04123 5.29832 5.37184 5.50999 5.52896 5.54293 5.71537 5.78818 5.93919 6.17424 6.25024 6.59364 6.84278 7.04011 7.19301 8.70839 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.026447 B = 0.003631 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.449467 B = 7708.704890 C = 8382.156964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.115 4.115 4 C 0.117 3.883 5 H 0.176 0.824 6 N -0.694 5.694 7 C 0.686 3.314 8 O -0.561 6.561 9 N -0.498 5.498 10 C 0.243 3.757 11 C -0.280 4.280 12 C 0.069 3.931 13 N -0.341 5.341 14 C 0.271 3.729 15 C -0.549 4.549 16 H 0.045 0.955 17 C 0.021 3.979 18 N -0.918 5.918 19 Si 0.969 3.031 20 H -0.280 1.280 21 H -0.273 1.273 22 H -0.263 1.263 23 N -0.311 5.311 24 C 0.524 3.476 25 O -0.469 6.469 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.456 0.544 34 H 0.175 0.825 35 H 0.217 0.783 36 H 0.021 0.979 37 H 0.070 0.930 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.052 -12.918 15.511 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.154 4.154 4 C 0.010 3.990 5 H 0.192 0.808 6 N -0.362 5.362 7 C 0.386 3.614 8 O -0.433 6.433 9 N -0.241 5.241 10 C -0.010 4.010 11 C -0.311 4.311 12 C -0.079 4.079 13 N -0.124 5.124 14 C 0.153 3.847 15 C -0.587 4.587 16 H 0.063 0.937 17 C -0.179 4.179 18 N -0.556 5.556 19 Si 0.793 3.207 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.187 1.187 23 N -0.140 5.140 24 C 0.313 3.687 25 O -0.337 6.337 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.304 0.696 34 H 0.192 0.808 35 H 0.234 0.766 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.352 -12.735 14.039 24.392 hybrid contribution 0.646 -0.124 -0.248 0.702 sum -14.706 -12.859 13.791 23.913 Atomic orbital electron populations 1.21772 0.95314 1.02300 1.01906 1.21516 0.96385 0.93891 1.03751 1.21919 0.88356 1.00574 1.04552 1.22408 0.98298 0.89053 0.89288 0.80755 1.45377 1.53220 1.15353 1.22207 1.16153 0.80768 0.81214 0.83245 1.91100 1.48669 1.81658 1.21899 1.43320 1.47192 1.10900 1.22697 1.19290 0.99030 0.87827 0.94828 1.21324 1.13608 0.92356 1.03829 1.23280 0.97490 1.01609 0.85530 1.49165 1.39744 1.08846 1.14624 1.19424 0.88974 0.92315 0.83982 1.21386 1.09735 1.05263 1.22338 0.93659 1.25684 1.00724 0.96529 0.95006 1.69982 1.38803 1.20805 1.26034 0.85341 0.78752 0.78427 0.78143 1.20545 1.19842 1.18745 1.77711 1.17270 0.98360 1.20647 1.21759 0.76296 0.91452 0.79235 1.90751 1.56650 1.50544 1.35776 0.93490 0.91777 0.92159 0.91209 0.89255 0.87936 0.91876 0.69586 0.80801 0.76639 0.96085 0.91203 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.12 -0.69 5.86 30.59 0.18 -0.51 16 3 C -0.12 -1.17 4.97 30.59 0.15 -1.02 16 4 C 0.12 1.64 3.66 44.37 0.16 1.80 16 5 H 0.18 1.09 8.14 -2.39 -0.02 1.07 16 6 N -0.69 -12.91 6.02 -459.60 -2.77 -15.68 16 7 C 0.69 23.19 8.59 179.44 1.54 24.73 16 8 O -0.56 -25.53 16.83 -3.84 -0.06 -25.60 16 9 N -0.50 -17.30 2.83 -599.31 -1.70 -19.00 16 10 C 0.24 10.48 7.67 133.24 1.02 11.50 16 11 C -0.28 -10.47 9.98 22.10 0.22 -10.25 16 12 C 0.07 2.63 11.44 83.52 0.96 3.59 16 13 N -0.34 -16.63 3.67 -351.85 -1.29 -17.92 16 14 C 0.27 14.50 6.26 85.63 0.54 15.04 16 15 C -0.55 -32.55 9.23 25.60 0.24 -32.31 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.02 1.21 5.46 84.65 0.46 1.68 16 18 N -0.92 -53.13 13.29 21.45 0.28 -52.84 16 19 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 23 N -0.31 -16.11 11.33 -54.33 -0.62 -16.73 16 24 C 0.52 13.39 7.59 87.94 0.67 14.06 16 25 O -0.47 -13.22 15.90 -2.91 -0.05 -13.27 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.37 7.56 -2.38 -0.02 0.35 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.46 5.58 8.52 -92.71 -0.79 4.79 16 34 H 0.17 5.62 6.69 -2.91 -0.02 5.60 16 35 H 0.22 6.02 8.06 -2.91 -0.02 5.99 16 36 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 3.52 8.07 -2.39 -0.02 3.50 16 38 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -81.44 331.50 2.98 -78.46 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.30 Total: 6.90 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 6.85 Total: 27.91 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -6.09 Total: -122.17 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.11 Total: -38.87 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -81.44 2.98 -78.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348583897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.496 kcal (2) G-P(sol) polarization free energy of solvation -81.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds