Wall clock time and date at job start Tue Mar 31 2020 06:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47194 * 2 1 4 4 C 1.53002 * 110.66135 * 66.45853 * 3 2 1 5 5 N 1.47314 * 110.60182 * 303.54606 * 3 2 1 6 6 C 1.34535 * 106.61668 * 241.47493 * 5 3 2 7 7 O 1.21533 * 123.76559 * 179.97438 * 6 5 3 8 8 N 1.33790 * 112.46028 * 359.97438 * 6 5 3 9 9 C 1.40401 * 124.17827 * 180.02562 * 8 6 5 10 10 C 1.40375 * 125.96785 * 4.97129 * 9 8 6 11 11 C 1.35237 * 107.87191 * 179.97438 * 10 9 8 12 12 N 1.34972 * 107.85438 * 0.02562 * 11 10 9 13 13 C 1.46496 * 125.97862 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46984 * 125.00099 * 13 12 11 15 15 H 1.08002 * 119.99855 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00506 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99584 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00477 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47221 * 90.00230 * 18 16 14 20 20 H 1.48501 * 109.47591 * 210.00318 * 18 16 14 21 21 H 1.48502 * 109.47169 * 330.00355 * 18 16 14 22 22 N 1.31192 * 125.96715 * 184.66604 * 9 8 6 23 23 C 1.34769 * 111.64073 * 359.97438 * 8 6 5 24 24 O 1.21247 * 127.15411 * 179.97438 * 23 8 6 25 25 H 1.09009 * 109.46602 * 60.00001 * 1 2 3 26 26 H 1.08999 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47058 * 300.00277 * 1 2 3 28 28 H 1.09001 * 109.47058 * 239.99723 * 2 1 3 29 29 H 1.08996 * 109.46919 * 119.99981 * 2 1 3 30 30 H 1.09002 * 109.46807 * 297.78942 * 4 3 2 31 31 H 1.09009 * 109.46672 * 57.78428 * 4 3 2 32 32 H 1.08999 * 109.47598 * 177.78503 * 4 3 2 33 33 H 0.96998 * 126.69173 * 61.73465 * 5 3 2 34 34 H 1.08004 * 126.06153 * 359.93105 * 10 9 8 35 35 H 1.07999 * 126.07216 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.47560 * 244.99997 * 13 12 11 37 37 H 1.08999 * 109.47739 * 5.00219 * 13 12 11 38 38 H 0.97006 * 120.00328 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6809 2.1420 1.3125 5 7 1.4944 2.1851 -1.1493 6 6 2.5469 2.5678 -1.8948 7 8 2.4489 3.2054 -2.9248 8 7 3.7134 2.1681 -1.3756 9 6 4.9657 2.4339 -1.9521 10 6 5.1996 3.2280 -3.0857 11 6 6.5316 3.2359 -3.3192 12 7 7.1223 2.4767 -2.3724 13 6 8.5585 2.2142 -2.2519 14 6 9.0258 2.6010 -0.8724 15 1 8.3231 3.0019 -0.1569 16 6 10.3501 2.4423 -0.5233 17 7 11.2057 1.9537 -1.3944 18 14 10.9295 2.9225 1.1864 19 1 10.8074 1.7553 2.0965 20 1 12.3485 3.3558 1.1248 21 1 10.0930 4.0381 1.6974 22 7 6.1221 1.9880 -1.5220 23 6 3.5378 1.4798 -0.2303 24 8 4.3987 0.9906 0.4694 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5967 2.1858 1.4159 31 1 2.1035 1.5848 2.1486 32 1 2.0866 3.1537 1.3079 33 1 0.5590 2.3665 -1.3309 34 1 4.4489 3.7410 -3.6685 35 1 7.0336 3.7571 -4.1209 36 1 8.7491 1.1536 -2.4159 37 1 9.0986 2.7997 -2.9959 38 1 12.1376 1.8423 -1.1490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348596874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:24 Heat of formation + Delta-G solvation = 17.524460 kcal Electronic energy + Delta-G solvation = -23525.346399 eV Core-core repulsion = 19983.984101 eV Total energy + Delta-G solvation = -3541.362297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.94799 -41.96301 -39.88915 -38.07659 -36.84006 -35.55210 -33.80166 -32.68102 -31.16948 -30.52863 -28.94446 -26.86571 -25.38924 -24.69877 -23.69258 -22.18977 -21.20027 -20.82719 -18.99975 -18.72248 -18.16694 -18.05738 -17.29785 -16.93523 -16.76448 -16.23909 -16.04181 -15.81371 -15.38987 -15.06717 -14.66938 -14.32271 -14.20921 -14.05483 -13.76740 -13.56555 -13.18097 -13.01926 -13.00172 -12.77504 -12.42344 -12.33622 -12.22924 -11.93601 -11.90634 -11.74320 -11.57852 -11.08953 -10.76312 -10.62535 -10.06317 -9.42508 -8.37806 -6.50827 0.40790 0.66214 0.88811 1.34164 1.36213 1.43456 1.47817 1.86767 2.03344 2.22906 2.32586 2.74184 2.94879 3.36666 3.62203 3.73845 3.89370 4.20029 4.30482 4.37351 4.40858 4.58038 4.69064 4.71067 4.80684 4.85114 4.93803 5.00674 5.03411 5.10605 5.19808 5.43822 5.49859 5.52816 5.70661 5.75245 5.91235 6.16192 6.28089 6.58216 6.79761 6.98937 7.18903 8.70728 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.004298 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.105947 B = 6512.822029 C = 7379.639732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.142 3.858 4 C -0.145 4.145 5 N -0.684 5.684 6 C 0.708 3.292 7 O -0.554 6.554 8 N -0.501 5.501 9 C 0.244 3.756 10 C -0.278 4.278 11 C 0.068 3.932 12 N -0.338 5.338 13 C 0.271 3.729 14 C -0.551 4.551 15 H 0.046 0.954 16 C 0.022 3.978 17 N -0.917 5.917 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.266 1.266 21 H -0.274 1.274 22 N -0.316 5.316 23 C 0.505 3.495 24 O -0.472 6.472 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.459 0.541 34 H 0.172 0.828 35 H 0.217 0.783 36 H 0.022 0.978 37 H 0.070 0.930 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.958 -0.442 2.068 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.051 3.949 4 C -0.203 4.203 5 N -0.352 5.352 6 C 0.409 3.591 7 O -0.428 6.428 8 N -0.243 5.243 9 C -0.008 4.008 10 C -0.309 4.309 11 C -0.080 4.080 12 N -0.121 5.121 13 C 0.153 3.847 14 C -0.589 4.589 15 H 0.065 0.935 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.793 3.207 19 H -0.201 1.201 20 H -0.190 1.190 21 H -0.199 1.199 22 N -0.145 5.145 23 C 0.292 3.708 24 O -0.338 6.338 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.142 0.858 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.309 0.691 34 H 0.190 0.810 35 H 0.233 0.767 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.552 -1.162 2.760 22.749 hybrid contribution 0.341 0.587 -0.101 0.687 sum -22.210 -0.575 2.658 22.376 Atomic orbital electron populations 1.21794 0.90997 1.03878 1.03617 1.21807 0.99787 0.89820 1.04060 1.21651 0.85553 0.97310 0.90347 1.22125 1.05921 1.00156 0.92114 1.45425 1.08151 1.57474 1.24149 1.15680 0.80399 0.79693 0.83373 1.90943 1.84868 1.43150 1.23805 1.43307 1.04722 1.51438 1.24877 1.19213 0.84722 1.00782 0.96118 1.21423 0.96345 1.10984 1.02110 1.23270 0.93082 0.96074 0.95586 1.49114 1.07501 1.36134 1.19314 1.19439 0.69346 0.97207 0.98700 1.21358 0.94588 1.44507 0.98465 0.93537 1.25680 0.96037 0.94335 1.01790 1.69975 1.04502 1.44688 1.36420 0.85395 0.77864 0.78582 0.78873 1.20095 1.19034 1.19883 1.77566 0.94874 1.24534 1.17567 1.22102 0.93465 0.76165 0.79045 1.90847 1.50973 1.43298 1.48720 0.91579 0.90793 0.89790 0.92282 0.88660 0.85821 0.89299 0.92380 0.69128 0.81038 0.76683 0.95985 0.91260 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.51 71.98 0.68 -0.23 16 2 C -0.12 -1.63 5.27 30.59 0.16 -1.47 16 3 C 0.14 2.65 1.00 2.98 0.00 2.65 16 4 C -0.15 -1.87 8.71 71.98 0.63 -1.25 16 5 N -0.68 -12.00 5.41 -439.82 -2.38 -14.38 16 6 C 0.71 20.83 8.58 179.44 1.54 22.37 16 7 O -0.55 -18.73 15.49 -3.82 -0.06 -18.79 16 8 N -0.50 -18.14 2.83 -599.31 -1.70 -19.83 16 9 C 0.24 10.75 7.68 133.24 1.02 11.77 16 10 C -0.28 -10.92 9.88 22.10 0.22 -10.70 16 11 C 0.07 2.66 11.44 83.52 0.96 3.61 16 12 N -0.34 -16.48 3.67 -351.86 -1.29 -17.77 16 13 C 0.27 14.43 6.26 85.63 0.54 14.96 16 14 C -0.55 -32.32 9.23 25.60 0.24 -32.09 16 15 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 16 C 0.02 1.27 5.46 84.65 0.46 1.73 16 17 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 18 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 22 N -0.32 -16.24 11.56 -54.33 -0.63 -16.87 16 23 C 0.50 16.79 6.94 87.94 0.61 17.40 16 24 O -0.47 -19.80 17.17 -2.93 -0.05 -19.85 16 25 H 0.07 0.33 7.05 -2.38 -0.02 0.31 16 26 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.23 6.76 -2.39 -0.02 0.21 16 28 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.12 0.58 6.83 -2.39 -0.02 0.57 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.46 4.41 8.13 -92.71 -0.75 3.65 16 34 H 0.17 6.14 6.52 -2.91 -0.02 6.12 16 35 H 0.22 6.23 8.06 -2.91 -0.02 6.21 16 36 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 3.49 8.07 -2.39 -0.02 3.47 16 38 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -79.19 326.62 3.61 -75.59 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.35 Total: 8.45 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 7.06 Total: 28.77 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.71 Total: -121.34 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.11 Total: -38.63 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -79.19 3.61 -75.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348596874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.111 kcal (2) G-P(sol) polarization free energy of solvation -79.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds