Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35233 * 126.07191 * 2 1 4 4 C 1.40377 * 107.87192 * 179.97438 * 3 2 1 5 5 N 1.40394 * 125.96992 * 179.97438 * 4 3 2 6 6 C 1.34767 * 124.18194 * 184.98445 * 5 4 3 7 7 O 1.21243 * 127.15062 * 0.08847 * 6 5 4 8 8 C 1.51574 * 105.69029 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.73203 * 118.59404 * 8 6 5 10 10 C 1.53006 * 110.60179 * 241.47707 * 8 6 5 11 11 N 1.47310 * 103.59228 * 0.02562 * 8 6 5 12 12 C 1.46506 * 126.69128 * 180.02562 * 11 8 6 13 13 C 1.33796 * 124.17921 * 5.03252 * 5 4 3 14 14 O 1.21538 * 123.76926 * 359.95701 * 13 5 4 15 15 N 1.31192 * 108.05919 * 0.26480 * 4 3 2 16 16 N 1.34964 * 126.07128 * 179.97438 * 2 1 3 17 17 C 1.46502 * 125.98349 * 0.03986 * 16 2 1 18 18 C 1.50698 * 109.47453 * 89.99410 * 17 16 2 19 19 H 1.08001 * 119.99717 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00194 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00224 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99959 * 359.97438 * 20 18 17 23 23 H 1.48508 * 109.46918 * 90.00273 * 22 20 18 24 24 H 1.48503 * 109.47289 * 210.00289 * 22 20 18 25 25 H 1.48496 * 109.47372 * 330.00792 * 22 20 18 26 26 H 1.08998 * 109.47220 * 89.97342 * 1 2 3 27 27 H 1.09004 * 109.47403 * 209.97582 * 1 2 3 28 28 H 1.09002 * 109.46975 * 329.97264 * 1 2 3 29 29 H 1.07999 * 126.06554 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.46801 * 174.17279 * 10 8 6 31 31 H 1.09001 * 109.46998 * 294.16875 * 10 8 6 32 32 H 1.09000 * 109.47050 * 54.17167 * 10 8 6 33 33 H 1.09000 * 109.47062 * 89.99676 * 12 11 8 34 34 H 1.09001 * 109.47065 * 210.00162 * 12 11 8 35 35 H 1.09002 * 109.46976 * 329.99579 * 12 11 8 36 36 H 1.08994 * 109.47512 * 210.00171 * 17 16 2 37 37 H 1.09004 * 109.46565 * 329.99708 * 17 16 2 38 38 H 0.96999 * 120.00242 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6369 0.6546 0.0006 5 7 4.7751 1.4765 0.0003 6 6 6.0392 1.0191 -0.0960 7 8 6.3943 -0.1357 -0.1964 8 6 6.9243 2.2489 -0.0542 9 1 7.5901 2.2160 0.8081 10 6 7.7292 2.3771 -1.3491 11 7 5.9664 3.3607 0.0733 12 6 6.2876 4.7877 0.1573 13 6 4.7390 2.8105 0.0965 14 8 3.7122 3.4532 0.1938 15 7 3.6336 -0.6573 -0.0048 16 7 2.3017 -1.0909 0.0005 17 6 1.8503 -2.4846 0.0003 18 6 1.6962 -2.9626 -1.4205 19 1 1.9132 -2.2951 -2.2414 20 6 1.2781 -4.2521 -1.6726 21 7 1.1441 -4.6693 -2.9126 22 14 0.9035 -5.4068 -0.2530 23 1 -0.5277 -5.2810 0.1230 24 1 1.1861 -6.8054 -0.6646 25 1 1.7540 -5.0521 0.9114 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5143 29 1 1.9720 2.1210 -0.0004 30 1 8.2792 3.3182 -1.3433 31 1 8.4312 1.5466 -1.4243 32 1 7.0508 2.3579 -2.2020 33 1 6.3147 5.2136 -0.8457 34 1 5.5264 5.2973 0.7481 35 1 7.2607 4.9137 0.6320 36 1 2.5847 -3.1045 0.5145 37 1 0.8914 -2.5560 0.5137 38 1 0.8504 -5.5766 -3.0900 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348661493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = 27.771821 kcal Electronic energy + Delta-G solvation = -23517.378977 eV Core-core repulsion = 19976.461039 eV Total energy + Delta-G solvation = -3540.917938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.81546 -42.09643 -39.87934 -37.60585 -36.86989 -35.44333 -33.61270 -32.95101 -32.15645 -29.76745 -28.26600 -27.90958 -26.05617 -24.77653 -23.21482 -22.95385 -21.05856 -20.41462 -19.29149 -18.66056 -18.24157 -17.72378 -17.30287 -16.90594 -16.43361 -16.18525 -15.89382 -15.67775 -15.50473 -15.03989 -14.64838 -14.54224 -14.08905 -13.90184 -13.74124 -13.67786 -13.36930 -13.31460 -13.17849 -12.96722 -12.79718 -12.56978 -12.39076 -11.92788 -11.90404 -11.83143 -11.69284 -11.16243 -10.91889 -10.14552 -9.87794 -9.41577 -8.43696 -6.55683 0.41069 0.57261 0.80056 1.32410 1.35678 1.36292 1.45943 1.68887 1.96483 2.19752 2.24408 2.79304 2.88505 3.43989 3.72694 3.80734 3.88135 4.07660 4.20122 4.37178 4.45873 4.61541 4.64195 4.70457 4.73396 4.74874 4.77879 4.88368 4.96130 5.04957 5.14794 5.17468 5.23173 5.34707 5.47822 5.88525 5.92480 6.22793 6.26229 6.46714 6.70627 6.87725 7.08011 8.73195 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.004275 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.888177 B = 6548.600632 C = 7261.017238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.099 3.901 3 C -0.283 4.283 4 C 0.256 3.744 5 N -0.503 5.503 6 C 0.500 3.500 7 O -0.477 6.477 8 C 0.114 3.886 9 H 0.173 0.827 10 C -0.145 4.145 11 N -0.606 5.606 12 C 0.113 3.887 13 C 0.698 3.302 14 O -0.556 6.556 15 N -0.326 5.326 16 N -0.336 5.336 17 C 0.240 3.760 18 C -0.554 4.554 19 H 0.022 0.978 20 C 0.023 3.977 21 N -0.936 5.936 22 Si 0.951 3.049 23 H -0.244 1.244 24 H -0.277 1.277 25 H -0.248 1.248 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.170 0.830 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 19.325 9.443 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.314 4.314 4 C 0.004 3.996 5 N -0.245 5.245 6 C 0.289 3.711 7 O -0.345 6.345 8 C 0.008 3.992 9 H 0.190 0.810 10 C -0.203 4.203 11 N -0.345 5.345 12 C -0.025 4.025 13 C 0.400 3.600 14 O -0.430 6.430 15 N -0.155 5.155 16 N -0.119 5.119 17 C 0.120 3.880 18 C -0.592 4.592 19 H 0.041 0.959 20 C -0.177 4.177 21 N -0.574 5.574 22 Si 0.772 3.228 23 H -0.168 1.168 24 H -0.203 1.203 25 H -0.172 1.172 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.133 0.867 29 H 0.188 0.812 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.643 17.849 9.327 22.778 hybrid contribution -0.704 -0.454 -0.274 0.882 sum 9.939 17.395 9.052 21.984 Atomic orbital electron populations 1.20581 0.84053 1.05282 1.04279 1.21824 0.97103 0.85720 0.98397 1.21130 0.88712 1.00423 1.21136 1.19063 0.87257 0.89382 1.03892 1.43391 1.06471 1.08065 1.66582 1.22228 0.82825 0.91848 0.74239 1.90846 1.78174 1.20896 1.44576 1.22383 0.91094 0.79840 1.05886 0.81022 1.22015 0.99625 1.06521 0.92096 1.47824 1.02750 1.08794 1.75153 1.21952 1.04019 0.72662 1.03892 1.15823 0.86224 0.79553 0.78393 1.90898 1.32936 1.63812 1.55377 1.77480 0.99825 1.09740 1.28436 1.48705 1.01569 1.07668 1.53982 1.19874 0.96632 0.74110 0.97352 1.21204 1.48076 0.98984 0.90928 0.95932 1.25833 0.93585 0.99081 0.99171 1.70028 1.46693 1.19075 1.21618 0.85677 0.80713 0.77678 0.78768 1.16762 1.20256 1.17167 0.89925 0.89948 0.86721 0.81244 0.85977 0.89147 0.93443 0.90506 0.90438 0.85911 0.93599 0.90015 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.60 10.11 71.24 0.72 -1.88 16 2 C 0.10 4.14 6.92 41.39 0.29 4.43 16 3 C -0.28 -11.77 9.79 22.10 0.22 -11.55 16 4 C 0.26 11.54 7.68 133.24 1.02 12.56 16 5 N -0.50 -18.48 2.83 -599.33 -1.70 -20.18 16 6 C 0.50 16.28 7.61 87.94 0.67 16.95 16 7 O -0.48 -19.62 17.17 -2.92 -0.05 -19.67 16 8 C 0.11 1.94 4.05 44.37 0.18 2.12 16 9 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 10 C -0.14 -1.75 9.46 71.98 0.68 -1.07 16 11 N -0.61 -11.18 3.14 -842.69 -2.65 -13.83 16 12 C 0.11 0.95 10.99 127.77 1.40 2.35 16 13 C 0.70 21.32 8.27 179.44 1.48 22.81 16 14 O -0.56 -19.55 15.16 -3.83 -0.06 -19.61 16 15 N -0.33 -16.77 11.74 -54.33 -0.64 -17.41 16 16 N -0.34 -16.48 3.59 -338.45 -1.22 -17.70 16 17 C 0.24 11.88 5.06 85.63 0.43 12.31 16 18 C -0.55 -32.79 9.94 25.60 0.25 -32.53 16 19 H 0.02 1.55 8.06 -2.91 -0.02 1.52 16 20 C 0.02 1.34 5.47 84.65 0.46 1.80 16 21 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 22 Si 0.95 41.62 27.47 68.60 1.88 43.51 16 23 H -0.24 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.25 -10.20 6.54 99.48 0.65 -9.55 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.08 2.40 7.07 -2.38 -0.02 2.38 16 28 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.17 6.49 6.52 -2.91 -0.02 6.47 16 30 H 0.12 0.49 8.13 -2.39 -0.02 0.47 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.82 8.03 -2.39 -0.02 0.80 16 35 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.05 2.31 7.20 -2.39 -0.02 2.29 16 37 H 0.08 3.47 6.47 -2.38 -0.02 3.46 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -87.44 327.95 4.72 -82.72 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.03 Total: 11.55 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 7.82 Total: 28.28 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -5.90 Total: -126.78 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.11 Total: -39.27 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.51 kcal Total: -87.44 4.72 -82.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348661493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.494 kcal (2) G-P(sol) polarization free energy of solvation -87.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds