Wall clock time and date at job start Tue Mar 31 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47033 * 299.99999 * 3 2 1 6 6 H 1.48499 * 109.47158 * 59.99658 * 3 2 1 7 7 C 1.38953 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99186 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99796 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00012 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47294 * 173.86406 * 12 10 9 14 14 C 1.47904 * 111.00326 * 183.36205 * 13 12 10 15 15 C 1.53988 * 107.06043 * 145.84582 * 14 13 12 16 16 C 1.54603 * 105.13980 * 358.77640 * 15 14 13 17 17 H 1.09004 * 110.72052 * 96.57937 * 16 15 14 18 18 C 1.50693 * 110.72462 * 219.68344 * 16 15 14 19 19 C 1.38239 * 119.97793 * 238.54675 * 18 16 15 20 20 C 1.38200 * 120.02820 * 180.02562 * 19 18 16 21 21 C 1.38457 * 119.97400 * 0.02562 * 20 19 18 22 22 F 1.35097 * 120.02378 * 179.97438 * 21 20 19 23 23 C 1.38454 * 119.95086 * 0.24578 * 21 20 19 24 24 C 1.38204 * 119.96898 * 359.47846 * 23 21 20 25 25 C 1.48528 * 111.00268 * 300.76000 * 13 12 10 26 26 H 0.96997 * 120.00367 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99979 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.47070 * 53.86084 * 12 10 9 29 29 H 1.09005 * 109.47194 * 293.86826 * 12 10 9 30 30 H 1.08999 * 109.91216 * 26.49138 * 14 13 12 31 31 H 1.09000 * 110.08317 * 265.29236 * 14 13 12 32 32 H 1.09005 * 110.31012 * 239.86114 * 15 14 13 33 33 H 1.08996 * 110.31403 * 117.69150 * 15 14 13 34 34 H 1.08004 * 119.98783 * 0.02562 * 19 18 16 35 35 H 1.08003 * 120.01107 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.01783 * 179.72255 * 23 21 20 37 37 H 1.08000 * 119.98535 * 180.27128 * 24 23 21 38 38 H 1.09001 * 110.67015 * 81.84219 * 25 13 12 39 39 H 1.08997 * 110.66775 * 318.71563 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0022 13 7 2.1915 -5.9755 -0.1460 14 6 1.4806 -7.2698 -0.2302 15 6 2.2901 -8.1687 -1.1830 16 6 3.4764 -7.2951 -1.6519 17 1 4.3642 -7.4965 -1.0525 18 6 3.7600 -7.5217 -3.1144 19 6 5.0069 -7.9634 -3.5158 20 6 5.2684 -8.1710 -4.8569 21 6 4.2811 -7.9358 -5.7987 22 9 4.5357 -8.1379 -7.1100 23 6 3.0344 -7.4880 -5.3961 24 6 2.7734 -7.2866 -4.0539 25 6 2.9620 -5.8538 -1.4099 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0016 28 1 0.5370 -4.8748 -0.8275 29 1 0.7024 -4.9695 0.9422 30 1 0.4769 -7.1169 -0.6270 31 1 1.4235 -7.7304 0.7560 32 1 1.6782 -8.4647 -2.0351 33 1 2.6547 -9.0492 -0.6540 34 1 5.7771 -8.1464 -2.7811 35 1 6.2428 -8.5158 -5.1703 36 1 2.2648 -7.2999 -6.1301 37 1 1.7997 -6.9415 -3.7392 38 1 3.7963 -5.1632 -1.2869 39 1 2.3141 -5.5344 -2.2262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361467219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:44 Heat of formation + Delta-G solvation = -52.332925 kcal Electronic energy + Delta-G solvation = -22605.819217 eV Core-core repulsion = 19041.507715 eV Total energy + Delta-G solvation = -3564.311503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.01238 -40.00316 -38.60396 -37.28192 -33.97516 -32.92312 -31.30709 -31.22818 -30.09492 -28.00307 -26.51478 -24.27267 -23.39783 -22.57322 -20.94150 -20.13080 -19.18001 -17.92752 -17.78925 -16.72289 -16.05147 -15.96872 -15.70913 -15.23040 -14.84257 -14.50626 -14.40701 -13.96747 -13.71580 -13.62790 -13.42120 -13.20313 -12.81948 -12.70256 -12.34285 -11.94073 -11.73860 -11.50461 -11.32475 -11.25099 -11.12784 -10.92066 -10.81984 -10.50200 -10.34125 -10.22888 -9.49918 -9.25999 -8.62754 -8.42037 -8.01985 -7.91836 -6.42346 -3.83008 0.99070 1.08091 3.16011 3.26759 3.33949 3.41393 3.89919 4.02944 4.12486 4.23828 4.53140 4.59034 4.73359 4.81808 4.90996 5.09280 5.13365 5.16415 5.20961 5.25134 5.43748 5.57868 5.70999 5.75045 5.80401 5.84494 5.89383 5.94282 5.96499 6.07276 6.12174 6.17268 6.27359 6.47196 6.56369 6.74339 7.18552 7.26534 7.55046 8.05987 8.61138 9.17753 9.53792 10.05448 10.75512 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.003446 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.942965 B = 8122.839688 C = 9072.731733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.578 6.578 12 C 0.037 3.963 13 N -0.494 5.494 14 C 0.032 3.968 15 C -0.121 4.121 16 C -0.057 4.057 17 H 0.093 0.907 18 C -0.073 4.073 19 C -0.086 4.086 20 C -0.152 4.152 21 C 0.087 3.913 22 F -0.144 7.144 23 C -0.150 4.150 24 C -0.086 4.086 25 C 0.050 3.950 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 -17.469 -7.020 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.095 4.095 13 N -0.218 5.218 14 C -0.096 4.096 15 C -0.159 4.159 16 C -0.076 4.076 17 H 0.111 0.889 18 C -0.074 4.074 19 C -0.104 4.104 20 C -0.171 4.171 21 C 0.068 3.932 22 F -0.123 7.123 23 C -0.169 4.169 24 C -0.104 4.104 25 C -0.078 4.078 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.126 0.874 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.614 -17.277 -6.599 18.845 hybrid contribution -0.906 0.894 -0.956 1.592 sum 2.708 -16.383 -7.555 18.244 Atomic orbital electron populations 1.69619 1.05946 1.28052 1.50726 1.25261 0.95626 0.99719 0.97346 0.85809 0.79735 0.81160 0.77706 1.19200 1.20777 1.20738 1.19750 0.93390 0.82188 1.47420 0.87847 1.41872 1.09182 1.04606 1.64406 1.19717 0.88405 0.84564 0.84535 1.90489 1.13648 1.86922 1.55164 1.22085 0.94088 0.91482 1.01813 1.64516 1.22033 1.00202 1.35044 1.22933 0.95987 0.90924 0.99773 1.22511 0.96239 0.98206 0.98935 1.21150 0.99373 0.96278 0.90807 0.88856 1.19901 0.93603 0.98347 0.95549 1.20963 0.96596 0.97931 0.94956 1.21122 0.99246 1.03653 0.93046 1.17717 0.95032 1.02603 0.77838 1.91484 1.94709 1.92886 1.33180 1.21126 0.96039 1.02481 0.97262 1.20902 0.99711 0.98210 0.91562 1.23427 0.99304 0.95271 0.89763 0.91931 0.77509 0.93510 0.89127 0.93935 0.90361 0.91350 0.90879 0.84853 0.84857 0.84847 0.85127 0.87355 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 10 C 0.44 10.36 7.41 -10.98 -0.08 10.28 16 11 O -0.58 -15.37 13.87 5.54 0.08 -15.30 16 12 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 13 N -0.49 -8.10 5.11 -231.90 -1.18 -9.29 16 14 C 0.03 0.39 6.70 -2.76 -0.02 0.37 16 15 C -0.12 -1.27 6.42 -25.37 -0.16 -1.43 16 16 C -0.06 -0.69 3.28 -89.91 -0.30 -0.99 16 17 H 0.09 1.12 7.95 -51.93 -0.41 0.70 16 18 C -0.07 -0.84 4.93 -104.62 -0.52 -1.35 16 19 C -0.09 -0.89 9.68 -39.59 -0.38 -1.28 16 20 C -0.15 -1.57 10.03 -39.51 -0.40 -1.96 16 21 C 0.09 1.00 7.30 -39.42 -0.29 0.71 16 22 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 23 C -0.15 -1.64 10.03 -39.51 -0.40 -2.03 16 24 C -0.09 -0.96 8.14 -39.59 -0.32 -1.28 16 25 C 0.05 0.80 4.97 -1.90 -0.01 0.79 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 28 H 0.05 0.76 7.98 -51.93 -0.41 0.34 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.04 0.48 7.68 -51.93 -0.40 0.09 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.65 7.06 -51.93 -0.37 0.29 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.13 1.12 7.98 -52.48 -0.42 0.71 16 35 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.36 7.27 -52.49 -0.38 0.98 16 38 H 0.11 2.12 6.43 -51.93 -0.33 1.79 16 39 H 0.04 0.64 6.69 -51.93 -0.35 0.29 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -30.78 327.77 -8.64 -39.42 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.02 Total: 9.42 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.14 Total: -5.47 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.52 Total: -47.33 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.78 -8.64 -39.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361467219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.910 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds