Wall clock time and date at job start Tue Mar 31 2020 07:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47033 * 299.99999 * 3 2 1 6 6 H 1.48499 * 109.47158 * 59.99658 * 3 2 1 7 7 C 1.38953 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99186 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99796 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00012 * 180.02562 * 10 9 7 13 13 N 1.46892 * 109.47294 * 173.86406 * 12 10 9 14 14 C 1.47904 * 111.00326 * 183.36205 * 13 12 10 15 15 C 1.53988 * 107.06043 * 145.84582 * 14 13 12 16 16 C 1.54603 * 105.13980 * 358.77640 * 15 14 13 17 17 H 1.09004 * 110.72052 * 96.57937 * 16 15 14 18 18 C 1.50693 * 110.72462 * 219.68344 * 16 15 14 19 19 C 1.38239 * 119.97793 * 238.54675 * 18 16 15 20 20 C 1.38200 * 120.02820 * 180.02562 * 19 18 16 21 21 C 1.38457 * 119.97400 * 0.02562 * 20 19 18 22 22 F 1.35097 * 120.02378 * 179.97438 * 21 20 19 23 23 C 1.38454 * 119.95086 * 0.24578 * 21 20 19 24 24 C 1.38204 * 119.96898 * 359.47846 * 23 21 20 25 25 C 1.48528 * 111.00268 * 300.76000 * 13 12 10 26 26 H 0.96997 * 120.00367 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99979 * 0.02562 * 9 7 2 28 28 H 1.09005 * 109.47070 * 53.86084 * 12 10 9 29 29 H 1.09005 * 109.47194 * 293.86826 * 12 10 9 30 30 H 1.08999 * 109.91216 * 26.49138 * 14 13 12 31 31 H 1.09000 * 110.08317 * 265.29236 * 14 13 12 32 32 H 1.09005 * 110.31012 * 239.86114 * 15 14 13 33 33 H 1.08996 * 110.31403 * 117.69150 * 15 14 13 34 34 H 1.08004 * 119.98783 * 0.02562 * 19 18 16 35 35 H 1.08003 * 120.01107 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.01783 * 179.72255 * 23 21 20 37 37 H 1.08000 * 119.98535 * 180.27128 * 24 23 21 38 38 H 1.09001 * 110.67015 * 81.84219 * 25 13 12 39 39 H 1.08997 * 110.66775 * 318.71563 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0022 13 7 2.1915 -5.9755 -0.1460 14 6 1.4806 -7.2698 -0.2302 15 6 2.2901 -8.1687 -1.1830 16 6 3.4764 -7.2951 -1.6519 17 1 4.3642 -7.4965 -1.0525 18 6 3.7600 -7.5217 -3.1144 19 6 5.0069 -7.9634 -3.5158 20 6 5.2684 -8.1710 -4.8569 21 6 4.2811 -7.9358 -5.7987 22 9 4.5357 -8.1379 -7.1100 23 6 3.0344 -7.4880 -5.3961 24 6 2.7734 -7.2866 -4.0539 25 6 2.9620 -5.8538 -1.4099 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0016 28 1 0.5370 -4.8748 -0.8275 29 1 0.7024 -4.9695 0.9422 30 1 0.4769 -7.1169 -0.6270 31 1 1.4235 -7.7304 0.7560 32 1 1.6782 -8.4647 -2.0351 33 1 2.6547 -9.0492 -0.6540 34 1 5.7771 -8.1464 -2.7811 35 1 6.2428 -8.5158 -5.1703 36 1 2.2648 -7.2999 -6.1301 37 1 1.7997 -6.9415 -3.7392 38 1 3.7963 -5.1632 -1.2869 39 1 2.3141 -5.5344 -2.2262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361467219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:43 Heat of formation + Delta-G solvation = -72.083576 kcal Electronic energy + Delta-G solvation = -22606.675670 eV Core-core repulsion = 19041.507715 eV Total energy + Delta-G solvation = -3565.167955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.90179 -41.07195 -40.05845 -38.63129 -35.95543 -34.08949 -33.23145 -32.11866 -31.13864 -29.11508 -28.02249 -26.02431 -24.27002 -23.51230 -22.10512 -21.09933 -20.95304 -19.87015 -18.70610 -17.90709 -17.39727 -17.07948 -16.60682 -16.58504 -16.39935 -15.91133 -15.83533 -15.46079 -14.82978 -14.68077 -14.45251 -14.36258 -14.05424 -13.81166 -13.64428 -13.54628 -13.12756 -12.92142 -12.78841 -12.40978 -12.35553 -12.17875 -12.11951 -11.98499 -11.87653 -11.46673 -11.43473 -10.25474 -10.07225 -10.00506 -9.51657 -9.26281 -8.47012 -5.95351 0.12800 0.26893 1.35963 1.41348 1.55392 2.04940 2.28505 2.56789 2.85417 3.20074 3.27029 3.33552 3.66398 3.79131 3.89074 3.94278 3.97633 4.25960 4.30460 4.34535 4.34737 4.37023 4.45895 4.58118 4.68465 4.80847 4.93268 4.99625 5.04294 5.12145 5.15482 5.19653 5.24716 5.32971 5.41331 5.61443 5.87788 5.91516 5.99759 6.14010 6.60675 7.13150 7.56245 8.12192 8.70755 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.003446 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.942965 B = 8122.839688 C = 9072.731733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.439 3.561 11 O -0.614 6.614 12 C 0.049 3.951 13 N -0.515 5.515 14 C 0.031 3.969 15 C -0.112 4.112 16 C -0.046 4.046 17 H 0.094 0.906 18 C -0.083 4.083 19 C -0.089 4.089 20 C -0.152 4.152 21 C 0.071 3.929 22 F -0.150 7.150 23 C -0.155 4.155 24 C -0.093 4.093 25 C 0.051 3.949 26 H 0.277 0.723 27 H 0.396 0.604 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -18.646 -7.125 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.500 6.500 12 C -0.083 4.083 13 N -0.239 5.239 14 C -0.096 4.096 15 C -0.150 4.150 16 C -0.065 4.065 17 H 0.112 0.888 18 C -0.083 4.083 19 C -0.107 4.107 20 C -0.170 4.170 21 C 0.052 3.948 22 F -0.129 7.129 23 C -0.174 4.174 24 C -0.111 4.111 25 C -0.076 4.076 26 H 0.087 0.913 27 H 0.229 0.771 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.081 0.919 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.106 -18.477 -6.704 19.899 hybrid contribution -0.729 1.220 -0.924 1.696 sum 2.377 -17.257 -7.628 19.016 Atomic orbital electron populations 1.69675 1.06805 1.29198 1.50520 1.26018 0.96526 1.02341 0.96346 0.84892 0.78044 0.77208 0.78333 1.19837 1.19630 1.19565 1.19683 0.92651 0.84000 1.49732 0.90379 1.41939 1.09281 1.04710 1.65262 1.20764 0.88324 0.85958 0.82267 1.90473 1.15636 1.87792 1.56124 1.21969 0.93842 0.88823 1.03644 1.64470 1.22670 1.01371 1.35426 1.23046 0.96488 0.88880 1.01172 1.22504 0.95280 0.98036 0.99158 1.21018 1.00061 0.93928 0.91524 0.88795 1.19933 0.94262 0.99034 0.95104 1.21199 0.96630 0.97366 0.95455 1.21366 0.99885 1.02962 0.92811 1.17959 0.95674 1.03294 0.77838 1.91468 1.94773 1.93012 1.33606 1.21303 0.96360 1.02205 0.97536 1.21003 1.00041 0.98359 0.91677 1.23236 0.97854 0.96937 0.89613 0.91325 0.77062 0.91495 0.87150 0.92565 0.89100 0.90004 0.88871 0.83011 0.82919 0.83583 0.84601 0.91878 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.80 13.05 21.66 0.28 -49.51 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.62 5.29 -306.98 -1.62 -31.24 16 10 C 0.44 21.00 7.41 87.66 0.65 21.65 16 11 O -0.61 -33.95 13.87 -3.07 -0.04 -33.99 16 12 C 0.05 1.69 5.30 85.56 0.45 2.14 16 13 N -0.51 -16.37 5.11 -887.60 -4.54 -20.90 16 14 C 0.03 0.68 6.70 86.44 0.58 1.26 16 15 C -0.11 -2.03 6.42 31.47 0.20 -1.82 16 16 C -0.05 -1.06 3.28 -10.33 -0.03 -1.10 16 17 H 0.09 2.13 7.95 -2.38 -0.02 2.11 16 18 C -0.08 -1.78 4.93 -19.86 -0.10 -1.87 16 19 C -0.09 -1.69 9.68 22.26 0.22 -1.48 16 20 C -0.15 -2.89 10.03 22.31 0.22 -2.67 16 21 C 0.07 1.55 7.30 22.37 0.16 1.72 16 22 F -0.15 -3.46 17.27 44.97 0.78 -2.68 16 23 C -0.16 -3.22 10.03 22.31 0.22 -3.00 16 24 C -0.09 -1.96 8.14 22.26 0.18 -1.78 16 25 C 0.05 1.65 4.97 86.65 0.43 2.08 16 26 H 0.28 14.00 8.31 -92.71 -0.77 13.22 16 27 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 28 H 0.07 2.06 7.98 -2.38 -0.02 2.04 16 29 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 30 H 0.06 1.09 7.68 -2.39 -0.02 1.07 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.29 7.06 -2.38 -0.02 1.28 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.15 2.26 7.98 -2.91 -0.02 2.23 16 35 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.14 2.65 7.27 -2.91 -0.02 2.63 16 38 H 0.06 2.60 6.43 -2.39 -0.02 2.58 16 39 H 0.04 1.14 6.69 -2.39 -0.02 1.12 16 Total: -1.00 -67.63 327.77 1.70 -65.93 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.34 Total: 30.37 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 4.47 Total: -3.16 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -5.88 Total: -101.66 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.04 Total: -33.99 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.63 1.70 -65.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361467219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.150 kcal (2) G-P(sol) polarization free energy of solvation -67.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds