Wall clock time and date at job start Tue Mar 31 2020 07:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.46909 * 180.02562 * 10 9 7 12 12 C 1.47190 * 110.99960 * 292.88765 * 11 10 9 13 13 C 1.52998 * 108.71531 * 167.62207 * 12 11 10 14 14 N 1.46003 * 110.04218 * 50.30601 * 13 12 11 15 15 C 1.33720 * 122.92537 * 341.84303 * 14 13 12 16 16 O 1.21281 * 118.62149 * 181.68800 * 15 14 13 17 17 C 1.46901 * 110.99827 * 169.99835 * 11 10 9 18 18 H 1.08992 * 109.38709 * 53.60985 * 17 11 10 19 19 C 1.50705 * 109.38380 * 293.81499 * 17 11 10 20 20 C 1.38213 * 120.01581 * 340.00620 * 19 17 11 21 21 C 1.38223 * 120.02787 * 179.97438 * 20 19 17 22 22 C 1.38270 * 120.04803 * 0.02562 * 21 20 19 23 23 C 1.38174 * 120.02793 * 0.02562 * 22 21 20 24 24 C 1.38442 * 120.00837 * 159.72545 * 19 17 11 25 25 F 1.35104 * 120.02685 * 0.02562 * 24 19 17 26 26 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 28 28 H 1.08994 * 109.47301 * 59.99976 * 9 7 2 29 29 H 1.09000 * 109.46719 * 299.99848 * 10 9 7 30 30 H 1.08994 * 109.47402 * 59.99779 * 10 9 7 31 31 H 1.08994 * 109.59220 * 287.40773 * 12 11 10 32 32 H 1.09005 * 109.59060 * 47.86452 * 12 11 10 33 33 H 1.09000 * 109.37615 * 290.12419 * 13 12 11 34 34 H 1.09000 * 109.27847 * 170.42465 * 13 12 11 35 35 H 0.96997 * 118.53674 * 161.86330 * 14 13 12 36 36 H 1.08004 * 119.99005 * 359.94815 * 20 19 17 37 37 H 1.07998 * 119.97759 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.98568 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.01747 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 7 1.5109 -4.9342 0.0012 12 6 0.7829 -5.1236 1.2664 13 6 -0.1969 -6.2868 1.0996 14 7 0.4938 -7.4473 0.5448 15 6 1.6736 -7.3614 -0.0788 16 8 2.1632 -8.3717 -0.5374 17 6 2.4176 -6.0654 -0.2358 18 1 3.2357 -6.0303 0.4835 19 6 2.9756 -5.9750 -1.6328 20 6 2.3283 -5.2141 -2.5879 21 6 2.8401 -5.1306 -3.8692 22 6 3.9998 -5.8085 -4.1971 23 6 4.6480 -6.5708 -3.2442 24 6 4.1399 -6.6496 -1.9584 25 9 4.7762 -7.3896 -1.0241 26 1 -0.4850 -0.8401 0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8896 29 1 2.8726 -3.6046 -0.8877 30 1 2.8713 -3.6039 0.8922 31 1 1.4896 -5.3521 2.0640 32 1 0.2331 -4.2148 1.5112 33 1 -1.0010 -5.9887 0.4267 34 1 -0.6165 -6.5461 2.0716 35 1 0.0784 -8.3194 0.6324 36 1 1.4220 -4.6847 -2.3332 37 1 2.3335 -4.5360 -4.6150 38 1 4.3986 -5.7429 -5.1986 39 1 5.5535 -7.1005 -3.5006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374594948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:53 Heat of formation + Delta-G solvation = -48.677021 kcal Electronic energy + Delta-G solvation = -23928.829797 eV Core-core repulsion = 20364.676827 eV Total energy + Delta-G solvation = -3564.152971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.66921 -40.63997 -38.59828 -37.31371 -35.00338 -33.52767 -31.75768 -30.41774 -29.67951 -28.76820 -26.01915 -24.06873 -23.20410 -22.48860 -21.71445 -20.58034 -19.06369 -17.65560 -17.38002 -16.90516 -16.52388 -16.17130 -15.89977 -15.24049 -15.06667 -14.58114 -14.41266 -14.16986 -13.87747 -13.74952 -13.59908 -13.02523 -12.94209 -12.54913 -12.23327 -12.10719 -12.03995 -11.57193 -11.39922 -11.28740 -10.92100 -10.82300 -10.31394 -10.16466 -10.02512 -9.72473 -9.10372 -8.78065 -8.64201 -8.50345 -8.37538 -8.25066 -6.42506 -4.12172 1.24448 1.38405 2.61961 3.23546 3.40980 3.44093 3.57632 3.75974 3.85949 4.43972 4.50003 4.55073 4.67247 4.84000 4.94375 5.06651 5.17239 5.25316 5.32675 5.35582 5.39279 5.57715 5.74713 5.84550 5.96219 6.03612 6.14695 6.20054 6.25678 6.50222 6.55770 6.64577 6.70120 6.96186 7.02034 7.08193 7.24382 7.39408 7.49870 8.14131 8.20338 8.40289 8.82248 9.59528 10.98665 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.005374 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.868106 B = 5208.960386 C = 6434.272250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 1.072 2.928 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.049 0.951 9 C 0.019 3.981 10 C 0.062 3.938 11 N -0.525 5.525 12 C 0.031 3.969 13 C 0.114 3.886 14 N -0.717 5.717 15 C 0.534 3.466 16 O -0.544 6.544 17 C 0.110 3.890 18 H 0.081 0.919 19 C -0.109 4.109 20 C -0.054 4.054 21 C -0.138 4.138 22 C -0.088 4.088 23 C -0.166 4.166 24 C 0.123 3.877 25 F -0.135 7.135 26 H 0.270 0.730 27 H 0.009 0.991 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.042 0.958 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.398 0.602 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -12.848 -2.241 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.067 0.933 9 C -0.018 4.018 10 C -0.065 4.065 11 N -0.251 5.251 12 C -0.098 4.098 13 C -0.010 4.010 14 N -0.370 5.370 15 C 0.319 3.681 16 O -0.421 6.421 17 C -0.001 4.001 18 H 0.098 0.902 19 C -0.111 4.111 20 C -0.072 4.072 21 C -0.156 4.156 22 C -0.107 4.107 23 C -0.185 4.185 24 C 0.104 3.896 25 F -0.113 7.113 26 H 0.080 0.920 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.234 0.766 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.502 -11.531 -2.837 12.136 hybrid contribution 0.728 -2.068 0.989 2.405 sum 3.230 -13.599 -1.848 14.099 Atomic orbital electron populations 1.70733 1.06863 1.30688 1.46552 1.25786 0.96501 1.02603 0.93678 0.83500 0.74500 0.74923 0.77023 1.21545 1.21278 1.21354 1.22023 0.94356 0.91826 1.56003 0.93304 1.19219 0.94399 0.91674 0.96557 1.22407 0.96871 0.86870 1.00308 1.62649 1.27228 1.02017 1.33204 1.22581 0.96968 0.99521 0.90687 1.21579 0.95400 0.85151 0.98872 1.45517 1.21363 1.11454 1.58643 1.19880 0.81058 0.90263 0.76882 1.90750 1.66578 1.36333 1.48400 1.20368 0.94869 0.89701 0.95198 0.90169 1.19275 0.95236 1.01218 0.95345 1.21180 0.99680 0.94987 0.91339 1.21245 0.96866 1.00621 0.96883 1.21005 0.95081 0.95636 0.98932 1.21014 1.02310 1.03317 0.91881 1.17478 0.92000 0.93287 0.86862 1.91484 1.80872 1.74484 1.64506 0.91983 0.97322 0.96424 0.90821 0.95404 0.94008 0.87134 0.90528 0.90273 0.76612 0.83309 0.85222 0.85293 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 13.65 55.43 0.76 -25.99 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 24.65 29.90 -169.99 -5.08 19.57 16 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.60 -16.32 9.11 -34.44 -0.31 -16.64 16 8 H 0.05 1.32 7.74 -52.48 -0.41 0.92 16 9 C 0.02 0.44 4.26 -27.88 -0.12 0.32 16 10 C 0.06 1.20 4.23 -3.82 -0.02 1.19 16 11 N -0.53 -8.63 3.38 -229.46 -0.78 -9.41 16 12 C 0.03 0.43 5.46 -3.67 -0.02 0.41 16 13 C 0.11 1.27 7.39 -4.31 -0.03 1.23 16 14 N -0.72 -9.06 5.52 -61.06 -0.34 -9.40 16 15 C 0.53 8.62 7.37 -11.67 -0.09 8.54 16 16 O -0.54 -10.32 16.26 5.56 0.09 -10.23 16 17 C 0.11 1.81 1.84 -70.23 -0.13 1.68 16 18 H 0.08 1.35 7.91 -51.93 -0.41 0.94 16 19 C -0.11 -1.81 4.14 -104.55 -0.43 -2.24 16 20 C -0.05 -0.85 7.87 -39.60 -0.31 -1.16 16 21 C -0.14 -1.88 10.04 -39.58 -0.40 -2.27 16 22 C -0.09 -1.09 10.04 -39.59 -0.40 -1.49 16 23 C -0.17 -2.27 10.03 -39.51 -0.40 -2.66 16 24 C 0.12 2.01 6.71 -39.42 -0.26 1.75 16 25 F -0.14 -2.32 16.08 2.25 0.04 -2.29 16 26 H 0.27 7.80 7.22 -40.82 -0.29 7.51 16 27 H 0.01 0.21 6.24 -51.93 -0.32 -0.12 16 28 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 29 H 0.07 1.49 6.06 -51.93 -0.31 1.17 16 30 H 0.03 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.11 1.65 6.10 -51.93 -0.32 1.33 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.40 4.25 8.84 -40.82 -0.36 3.89 16 36 H 0.15 2.49 6.88 -52.48 -0.36 2.13 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -31.91 321.73 -8.43 -40.34 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.96 Total: 3.50 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -3.01 Total: -10.95 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.36 Total: -44.79 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.91 -8.43 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374594948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.336 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds